Plxnc1 (plexin C1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Plxnc1 (plexin C1) Rattus norvegicus
Analyze
Symbol: Plxnc1
Name: plexin C1
RGD ID: 1307420
Description: Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including positive regulation of axonogenesis; regulation of synapse pruning; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be part of semaphorin receptor complex. Predicted to be active in cerebellar climbing fiber to Purkinje cell synapse and plasma membrane. Orthologous to human PLXNC1 (plexin C1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362873; plexin-C1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8731,276,978 - 31,430,823 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl731,276,978 - 31,431,092 (-)EnsemblGRCr8
mRatBN7.2729,390,038 - 29,543,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)EnsemblmRatBN7.2
Rnor_6.0735,848,083 - 36,000,969 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl735,850,398 - 36,000,906 (-)Ensemblrn6Rnor6.0
Rnor_5.0735,912,101 - 36,063,768 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4731,984,866 - 32,137,758 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera726,469,439 - 26,621,620 (-)NCBICelera
RGSC_v3.1732,007,444 - 32,157,845 (-)NCBI
Cytogenetic Map7q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5-triiodo-L-thyronine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
clobetasol  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diethyl malate  (ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dimethylarsinic acid  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
leflunomide  (ISO)
maneb  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17727705   PMID:19946888   PMID:28765893  


Genomics

Comparative Map Data
Plxnc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8731,276,978 - 31,430,823 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl731,276,978 - 31,431,092 (-)EnsemblGRCr8
mRatBN7.2729,390,038 - 29,543,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)EnsemblmRatBN7.2
Rnor_6.0735,848,083 - 36,000,969 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl735,850,398 - 36,000,906 (-)Ensemblrn6Rnor6.0
Rnor_5.0735,912,101 - 36,063,768 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4731,984,866 - 32,137,758 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera726,469,439 - 26,621,620 (-)NCBICelera
RGSC_v3.1732,007,444 - 32,157,845 (-)NCBI
Cytogenetic Map7q13NCBI
PLXNC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381294,148,577 - 94,307,675 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1294,148,577 - 94,307,675 (+)Ensemblhg38GRCh38
GRCh371294,542,353 - 94,701,451 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361293,066,630 - 93,223,356 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341293,044,966 - 93,201,693NCBI
Celera1294,213,729 - 94,370,485 (+)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1291,610,270 - 91,768,612 (+)NCBIHuRef
CHM1_11294,507,552 - 94,666,454 (+)NCBICHM1_1
T2T-CHM13v2.01294,129,732 - 94,288,500 (+)NCBIT2T-CHM13v2.0
Plxnc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391094,626,728 - 94,780,875 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1094,626,728 - 94,780,697 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381094,790,866 - 94,945,015 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1094,790,866 - 94,944,835 (-)Ensemblmm10GRCm38
MGSCv371094,253,611 - 94,407,212 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361094,222,985 - 94,374,266 (-)NCBIMGSCv36mm8
Celera1096,763,537 - 96,917,770 (-)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.09NCBI
Plxnc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540530,885,278 - 31,021,544 (+)Ensembl
ChiLan1.0NW_00495540530,885,277 - 31,023,947 (+)NCBIChiLan1.0ChiLan1.0
PLXNC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210102,194,435 - 102,352,972 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112102,190,829 - 102,349,366 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01291,694,449 - 91,852,950 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11295,092,467 - 95,251,251 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1295,093,332 - 95,251,249 (+)EnsemblpanPan2panpan1.1
PLXNC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11534,279,880 - 34,417,134 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1534,279,932 - 34,417,720 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1534,730,384 - 34,867,603 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01534,943,288 - 35,080,504 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1534,942,721 - 35,079,123 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11534,216,942 - 34,354,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01534,306,467 - 34,443,602 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01534,575,260 - 34,712,431 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plxnc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494525,564,925 - 25,709,461 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650710,525,975 - 10,670,514 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493650710,525,975 - 10,670,511 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl588,900,234 - 89,055,924 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1588,900,238 - 89,055,837 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2593,325,725 - 93,459,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLXNC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11189,549,312 - 89,701,890 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037155,455,641 - 155,614,944 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxnc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475012,641,674 - 12,777,702 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475012,639,292 - 12,777,237 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Plxnc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11173,969,016 - 174,121,448 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plxnc1
1601 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:37
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000011178
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
724560Plsm3Polydactyly-luxate syndrome (PLS) morphotypes QTL 30.0003tibia length (VT:0004357)tibia length (CMO:0000450)7134650782Rat
1354639Spl5Serum phospholipid level QTL 53.9blood LDL phospholipid amount (VT:0010505)blood low density lipoprotein phospholipid level (CMO:0001568)72154197735707405Rat
7411566Bw136Body weight QTL 13610.40.001body mass (VT:0001259)body weight gain (CMO:0000420)7132612984Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
2290372Gluco33Glucose level QTL 332.71blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)7131777942Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
9590142Scort5Serum corticosterone level QTL 524.40.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)7132612984Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
D7Rat27  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,409,683 - 29,409,863 (+)MAPPERmRatBN7.2
Rnor_6.0735,867,729 - 35,867,908NCBIRnor6.0
Rnor_5.0735,931,747 - 35,931,926UniSTSRnor5.0
RGSC_v3.4732,004,505 - 32,004,684UniSTSRGSC3.4
RGSC_v3.4732,004,504 - 32,004,684RGDRGSC3.4
Celera726,489,080 - 26,489,243UniSTS
RGSC_v3.1732,024,776 - 32,024,955RGD
RH 3.4 Map7230.5RGD
RH 3.4 Map7230.5UniSTS
RH 2.0 Map7203.7RGD
SHRSP x BN Map722.05RGD
FHH x ACI Map712.22RGD
Cytogenetic Map7q13UniSTS
WI-14237  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,390,069 - 29,390,198 (+)MAPPERmRatBN7.2
Rnor_6.0735,848,114 - 35,848,242NCBIRnor6.0
Rnor_5.0735,912,132 - 35,912,260UniSTSRnor5.0
RGSC_v3.4731,984,890 - 31,985,018UniSTSRGSC3.4
Celera726,469,470 - 26,469,598UniSTS
Cytogenetic Map7q13UniSTS
RH132911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,391,694 - 29,391,887 (+)MAPPERmRatBN7.2
Rnor_6.0735,849,739 - 35,849,931NCBIRnor6.0
Rnor_5.0735,913,757 - 35,913,949UniSTSRnor5.0
RGSC_v3.4731,986,515 - 31,986,707UniSTSRGSC3.4
Celera726,471,095 - 26,471,287UniSTS
RH 3.4 Map7232.5UniSTS
Cytogenetic Map7q13UniSTS
BE102511  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,532,910 - 29,533,060 (+)MAPPERmRatBN7.2
Rnor_6.0735,990,413 - 35,990,562NCBIRnor6.0
Rnor_5.0736,053,234 - 36,053,383UniSTSRnor5.0
RGSC_v3.4732,127,081 - 32,127,230UniSTSRGSC3.4
Celera726,611,104 - 26,611,253UniSTS
RH 3.4 Map7232.5UniSTS
Cytogenetic Map7q13UniSTS
BE117374  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2729,390,089 - 29,390,302 (+)MAPPERmRatBN7.2
Rnor_6.0735,848,134 - 35,848,346NCBIRnor6.0
Rnor_5.0735,912,152 - 35,912,364UniSTSRnor5.0
RGSC_v3.4731,984,910 - 31,985,122UniSTSRGSC3.4
Celera726,469,490 - 26,469,702UniSTS
RH 3.4 Map7232.2UniSTS
Cytogenetic Map7q13UniSTS
BF390429  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8731,407,796 - 31,407,947 (+)Marker Load Pipeline
mRatBN7.2729,520,860 - 29,521,012 (+)MAPPERmRatBN7.2
Rnor_6.0735,978,348 - 35,978,499NCBIRnor6.0
Rnor_5.0736,041,582 - 36,041,733UniSTSRnor5.0
RGSC_v3.4732,115,748 - 32,115,899UniSTSRGSC3.4
Celera726,599,244 - 26,599,395UniSTS
RH 3.4 Map7232.5UniSTS
Cytogenetic Map7q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 352 192 11 144 77 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011178   ⟹   ENSRNOP00000011178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl731,276,978 - 31,430,605 (-)Ensembl
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)Ensembl
Rnor_6.0 Ensembl735,850,398 - 36,000,906 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102613   ⟹   ENSRNOP00000081399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl731,279,929 - 31,431,092 (-)Ensembl
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106534   ⟹   ENSRNOP00000078419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl731,276,978 - 31,431,092 (-)Ensembl
mRatBN7.2 Ensembl729,390,048 - 29,543,779 (-)Ensembl
RefSeq Acc Id: NM_001426988   ⟹   NP_001413917
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,978 - 31,430,605 (-)NCBI
RefSeq Acc Id: XM_039080100   ⟹   XP_038936028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,981 - 31,430,761 (-)NCBI
mRatBN7.2729,390,039 - 29,543,985 (-)NCBI
RefSeq Acc Id: XM_039080101   ⟹   XP_038936029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,279,859 - 31,430,761 (-)NCBI
mRatBN7.2729,392,489 - 29,543,985 (-)NCBI
RefSeq Acc Id: XM_039080102   ⟹   XP_038936030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,981 - 31,391,871 (-)NCBI
mRatBN7.2729,390,038 - 29,504,946 (-)NCBI
RefSeq Acc Id: XM_039080103   ⟹   XP_038936031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,276,981 - 31,390,137 (-)NCBI
mRatBN7.2729,390,038 - 29,503,186 (-)NCBI
RefSeq Acc Id: XM_063263772   ⟹   XP_063119842
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,296,224 - 31,430,823 (-)NCBI
RefSeq Acc Id: XR_005486861
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8731,285,556 - 31,430,820 (-)NCBI
mRatBN7.2729,398,472 - 29,543,985 (-)NCBI
Ensembl Acc Id: ENSRNOP00000011178   ⟸   ENSRNOT00000011178
RefSeq Acc Id: XP_038936030   ⟸   XM_039080102
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038936031   ⟸   XM_039080103
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038936028   ⟸   XM_039080100
- Peptide Label: isoform X1
- UniProtKB: D4A7M0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038936029   ⟸   XM_039080101
- Peptide Label: isoform X2
- UniProtKB: D4A7M0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081399   ⟸   ENSRNOT00000102613
Ensembl Acc Id: ENSRNOP00000078419   ⟸   ENSRNOT00000106534
RefSeq Acc Id: NP_001413917   ⟸   NM_001426988
- Peptide Label: precursor
- UniProtKB: A0A8I5ZKT8 (UniProtKB/TrEMBL),   D4A7M0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119842   ⟸   XM_063263772
- Peptide Label: isoform X3
- UniProtKB: D4A7M0 (UniProtKB/TrEMBL)
Protein Domains
Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7M0-F1-model_v2 AlphaFold D4A7M0 1-1574 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307420 AgrOrtholog
BioCyc Gene G2FUF-34354 BioCyc
Ensembl Genes ENSRNOG00000007970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011178.8 UniProtKB/TrEMBL
  ENSRNOT00000102613 ENTREZGENE
  ENSRNOT00000102613.2 UniProtKB/TrEMBL
  ENSRNOT00000106534 ENTREZGENE
  ENSRNOT00000106534.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
  GTPase Activation - p120gap, domain 1 UniProtKB/TrEMBL
  ligand-binding face of the semaphorins, domain 2 UniProtKB/TrEMBL
  Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin-C1_Sema UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
NCBI Gene 362873 ENTREZGENE
PANTHER PLEXIN-C1 UniProtKB/TrEMBL
  PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  Plexin_RBD UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
PhenoGen Plxnc1 PhenoGen
PROSITE SEMA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007970 RatGTEx
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Plexin repeat UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
UniProt A0A8I5ZKT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZS48_RAT UniProtKB/TrEMBL
  D4A7M0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Plxnc1  plexin C1   Plxnc1_predicted  plexin C1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Plxnc1_predicted  plexin C1 (predicted)      Symbol and Name status set to approved 70820 APPROVED