Snrpa (small nuclear ribonucleoprotein polypeptide A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Snrpa (small nuclear ribonucleoprotein polypeptide A) Rattus norvegicus
Analyze
Symbol: Snrpa
Name: small nuclear ribonucleoprotein polypeptide A
RGD ID: 1307416
Description: Enables U1 snRNP binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPA (small nuclear ribonucleoprotein polypeptide A); PARTICIPATES IN spliceosome pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292729; MGC105915; U1 small nuclear ribonucleoprotein A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,609,419 - 91,618,119 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl191,609,420 - 91,618,042 (-)EnsemblGRCr8
mRatBN7.2182,481,770 - 82,490,540 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,481,770 - 82,490,538 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx187,885,139 - 87,893,763 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,371,737 - 96,380,368 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,641,005 - 89,649,629 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,999,670 - 84,008,429 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,999,671 - 84,008,293 (-)Ensemblrn6Rnor6.0
Rnor_5.0185,210,609 - 85,219,354 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4182,265,660 - 82,274,283 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera176,894,674 - 76,903,305 (-)NCBICelera
RGSC_v3.1182,343,770 - 82,352,394 (-)NCBI
Cytogenetic Map1q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2,4,6-trinitrotoluene  (EXP)
2,4-dinitrotoluene  (EXP)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-amino-2,6-dinitrotoluene  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrolein  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antimony(0)  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzatropine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (ISO)
chromium atom  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
fenthion  (ISO)
fipronil  (EXP)
FR900359  (ISO)
furan  (EXP)
furfural  (ISO)
genistein  (ISO)
hypochlorous acid  (ISO)
ivermectin  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methidathion  (ISO)
methimazole  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
nitrates  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
piroxicam  (ISO)
potassium dichromate  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. U1 small nuclear ribonucleoprotein complex and RNA splicing alterations in Alzheimer's disease. Bai B, etal., Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16562-7. doi: 10.1073/pnas.1310249110. Epub 2013 Sep 10.
2. The U2 small nuclear ribonucleoprotein particle as an autoantigen. Analysis with sera from patients with overlap syndromes. Craft J, etal., J Clin Invest. 1988 Jun;81(6):1716-24.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Separation of nuclear protein complexes by blue native polyacrylamide gel electrophoresis. Novakova Z, etal., Electrophoresis. 2006 Apr;27(7):1277-87.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Post-transcriptional adenylation of signal recognition particle RNA is carried out by an enzyme different from mRNA Poly(A) polymerase. Sinha K, etal., J Biol Chem. 1999 Oct 22;274(43):30826-31.
11. Structural analyses of the pre-mRNA splicing machinery. Zhang L, etal., Protein Sci. 2013 Jun;22(6):677-92. doi: 10.1002/pro.2266. Epub 2013 May 8.
Additional References at PubMed
PMID:2147232   PMID:9731529   PMID:12477932   PMID:16189514   PMID:19561594   PMID:21113136   PMID:22681889   PMID:23793891   PMID:25002582   PMID:25416956   PMID:25555158   PMID:31505169  
PMID:31515488  


Genomics

Comparative Map Data
Snrpa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8191,609,419 - 91,618,119 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl191,609,420 - 91,618,042 (-)EnsemblGRCr8
mRatBN7.2182,481,770 - 82,490,540 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl182,481,770 - 82,490,538 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx187,885,139 - 87,893,763 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0196,371,737 - 96,380,368 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0189,641,005 - 89,649,629 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0183,999,670 - 84,008,429 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,999,671 - 84,008,293 (-)Ensemblrn6Rnor6.0
Rnor_5.0185,210,609 - 85,219,354 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4182,265,660 - 82,274,283 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera176,894,674 - 76,903,305 (-)NCBICelera
RGSC_v3.1182,343,770 - 82,352,394 (-)NCBI
Cytogenetic Map1q21NCBI
SNRPA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381940,751,203 - 40,765,389 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1940,750,585 - 40,765,393 (+)Ensemblhg38GRCh38
GRCh371941,257,108 - 41,271,294 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361945,948,619 - 45,963,134 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341945,948,618 - 45,963,132NCBI
Celera1938,057,181 - 38,071,716 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1937,690,119 - 37,704,571 (+)NCBIHuRef
CHM1_11941,256,437 - 41,270,984 (+)NCBICHM1_1
T2T-CHM13v2.01943,571,894 - 43,586,079 (+)NCBIT2T-CHM13v2.0
Snrpa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39726,886,431 - 26,895,696 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl726,886,430 - 26,895,696 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38727,187,006 - 27,196,271 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl727,187,005 - 27,196,271 (-)Ensemblmm10GRCm38
MGSCv37727,972,025 - 27,981,290 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36726,895,767 - 26,905,005 (-)NCBIMGSCv36mm8
Celera721,763,790 - 21,773,055 (-)NCBICelera
Cytogenetic Map7A3NCBI
cM Map715.84NCBI
Snrpa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955578579,087 - 590,010 (-)Ensembl
ChiLan1.0NW_004955578579,087 - 590,010 (-)NCBIChiLan1.0ChiLan1.0
SNRPA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,009,843 - 47,023,509 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11948,880,119 - 48,894,457 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01937,795,139 - 37,809,265 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11946,302,198 - 46,316,593 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1946,302,198 - 46,316,593 (+)EnsemblpanPan2panpan1.1
SNRPA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11113,018,268 - 113,030,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1113,018,304 - 113,030,734 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1112,420,689 - 112,433,272 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01113,616,707 - 113,629,493 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,616,107 - 113,629,089 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11113,176,101 - 113,189,057 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,808,102 - 112,820,664 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,802,215 - 113,814,984 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snrpa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934914,602,023 - 14,617,142 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366613,029,802 - 3,041,877 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366613,030,104 - 3,041,877 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl648,971,339 - 48,982,443 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1648,971,868 - 48,982,369 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2644,655,890 - 44,667,219 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1635,204,017 - 35,219,810 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl635,203,929 - 35,220,689 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607313,341,130 - 13,356,991 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624925671,038 - 696,695 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Snrpa
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12168,741,615 - 168,755,256 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Snrpa
41 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:42
Interacting mature miRNAs:44
Transcripts:ENSRNOT00000002053
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)18126986099645535Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat

Markers in Region
RH140495  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2182,481,833 - 82,482,044 (+)MAPPERmRatBN7.2
Rnor_6.0183,999,734 - 83,999,944NCBIRnor6.0
Rnor_5.0185,210,673 - 85,210,883UniSTSRnor5.0
RGSC_v3.4182,265,724 - 82,265,934UniSTSRGSC3.4
Celera176,894,738 - 76,894,948UniSTS
RH 3.4 Map1827.9UniSTS
Cytogenetic Map1q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000002053   ⟹   ENSRNOP00000002053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl191,609,420 - 91,618,042 (-)Ensembl
mRatBN7.2 Ensembl182,481,770 - 82,490,538 (-)Ensembl
Rnor_6.0 Ensembl183,999,671 - 84,008,293 (-)Ensembl
RefSeq Acc Id: NM_001008303   ⟹   NP_001008304
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8191,609,419 - 91,618,042 (-)NCBI
mRatBN7.2182,481,770 - 82,490,393 (-)NCBI
Rnor_6.0183,999,670 - 84,008,293 (-)NCBI
Rnor_5.0185,210,609 - 85,219,354 (-)NCBI
RGSC_v3.4182,265,660 - 82,274,283 (-)RGD
Celera176,894,674 - 76,903,305 (-)RGD
Sequence:
RefSeq Acc Id: XM_006228564   ⟹   XP_006228626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8191,609,419 - 91,618,119 (-)NCBI
mRatBN7.2182,481,770 - 82,490,540 (-)NCBI
Rnor_6.0183,999,670 - 84,008,429 (-)NCBI
Rnor_5.0185,210,609 - 85,219,354 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001008304   ⟸   NM_001008303
- UniProtKB: Q5U214 (UniProtKB/TrEMBL),   F1M6Z8 (UniProtKB/TrEMBL),   A0A9K3Y6T2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228626   ⟸   XM_006228564
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000002053   ⟸   ENSRNOT00000002053
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U214-F1-model_v2 AlphaFold Q5U214 1-281 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307416 AgrOrtholog
BioCyc Gene G2FUF-60322 BioCyc
Ensembl Genes ENSRNOG00000001501 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002053 ENTREZGENE
  ENSRNOT00000002053.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7300752 IMAGE-MGC_LOAD
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  U1A_RRM1 UniProtKB/TrEMBL
  U1A_RRM2 UniProtKB/TrEMBL
KEGG Report rno:292729 UniProtKB/TrEMBL
MGC_CLONE MGC:105915 IMAGE-MGC_LOAD
NCBI Gene 292729 ENTREZGENE
PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PhenoGen Snrpa PhenoGen
PROSITE RRM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001501 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A9K3Y6T2 ENTREZGENE, UniProtKB/TrEMBL
  F1M6Z8 ENTREZGENE
  Q5U214 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary F1M6Z8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Snrpa  small nuclear ribonucleoprotein polypeptide A  Snrpa_predicted  small nuclear ribonucleoprotein polypeptide A (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Snrpa_predicted  small nuclear ribonucleoprotein polypeptide A (predicted)      Symbol and Name status set to approved 70820 APPROVED