Septin11 (septin 11) - Rat Genome Database

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Gene: Septin11 (septin 11) Rattus norvegicus
Analyze
Symbol: Septin11
Name: septin 11
RGD ID: 1307405
Description: Predicted to enable GTPase activity and molecular adaptor activity. Involved in regulation of synapse organization. Is active in GABA-ergic synapse; glutamatergic synapse; and postsynaptic specialization of symmetric synapse. Orthologous to human SEPTIN11 (septin 11); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dibromophenyl 2,4,5-tribromophenyl ether.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305227; Sept11; Sept6; septin 6; septin-11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,119,760 - 15,275,222 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1415,128,951 - 15,275,200 (-)EnsemblGRCr8
mRatBN7.21414,844,759 - 14,990,856 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1414,844,580 - 14,990,853 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1414,916,495 - 14,999,685 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01416,235,511 - 16,318,706 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01414,930,766 - 15,013,947 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01416,369,544 - 16,405,645 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,369,544 - 16,452,998 (-)Ensemblrn6Rnor6.0
Rnor_5.01416,295,536 - 16,331,637 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41416,465,348 - 16,501,284 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1414,310,209 - 14,346,008 (-)NCBICelera
RGSC_v3.11416,464,587 - 16,550,314 (-)NCBI
Cytogenetic Map14p22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2,6-dimethoxyphenol  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
acetamide  (EXP)
aconitine  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
Benoxacor  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chrysene  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
eugenol  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP)
isotretinoin  (ISO)
ivermectin  (ISO)
mancozeb  (ISO)
medroxyprogesterone acetate  (ISO)
Mesaconitine  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
microcystin RR  (ISO)
microcystin-LR  (EXP)
nickel sulfate  (ISO)
nitrates  (ISO)
Nutlin-3  (ISO)
paracetamol  (EXP,ISO)
phenylmercury acetate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (EXP)
sodium chloride  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
tetraphene  (ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
torcetrapib  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Septin 11 is present in GABAergic synapses and plays a functional role in the cytoarchitecture of neurons and GABAergic synaptic connectivity. Li X, etal., J Biol Chem. 2009 Jun 19;284(25):17253-65. doi: 10.1074/jbc.M109.008870. Epub 2009 Apr 20.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15485874   PMID:16854843   PMID:17546647   PMID:18809578   PMID:22871113   PMID:23376485   PMID:28131823   PMID:29476059  


Genomics

Comparative Map Data
Septin11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81415,119,760 - 15,275,222 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1415,128,951 - 15,275,200 (-)EnsemblGRCr8
mRatBN7.21414,844,759 - 14,990,856 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1414,844,580 - 14,990,853 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1414,916,495 - 14,999,685 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01416,235,511 - 16,318,706 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01414,930,766 - 15,013,947 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01416,369,544 - 16,405,645 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1416,369,544 - 16,452,998 (-)Ensemblrn6Rnor6.0
Rnor_5.01416,295,536 - 16,331,637 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41416,465,348 - 16,501,284 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1414,310,209 - 14,346,008 (-)NCBICelera
RGSC_v3.11416,464,587 - 16,550,314 (-)NCBI
Cytogenetic Map14p22NCBI
SEPTIN11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38476,949,752 - 77,040,154 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl476,949,747 - 77,040,384 (+)Ensemblhg38GRCh38
GRCh37477,870,905 - 77,959,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36478,089,919 - 78,178,792 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34478,228,073 - 78,316,946NCBI
Celera475,172,269 - 75,261,155 (+)NCBICelera
Cytogenetic Map4q21.1NCBI
HuRef473,622,723 - 73,711,589 (+)NCBIHuRef
CHM1_1477,848,139 - 77,937,022 (+)NCBICHM1_1
T2T-CHM13v2.0480,290,475 - 80,380,967 (+)NCBIT2T-CHM13v2.0
Septin11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39593,227,445 - 93,329,237 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl593,241,296 - 93,324,306 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38593,090,995 - 93,182,368 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl593,093,437 - 93,176,447 (+)Ensemblmm10GRCm38
MGSCv37593,522,483 - 93,603,984 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36594,168,661 - 94,250,162 (+)NCBIMGSCv36mm8
Celera591,247,357 - 91,328,543 (+)NCBICelera
Cytogenetic Map5E2NCBI
cM Map547.29NCBI
Septin11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554331,606,261 - 1,691,812 (+)Ensembl
ChiLan1.0NW_0049554331,606,246 - 1,691,819 (+)NCBIChiLan1.0ChiLan1.0
SEPTIN11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2353,012,259 - 53,133,197 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1453,107,370 - 53,313,062 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0447,165,381 - 47,255,954 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1453,004,755 - 53,095,427 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl453,006,294 - 53,095,844 (-)EnsemblpanPan2panpan1.1
SEPTIN11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1321,553,208 - 1,608,132 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl321,475,748 - 1,607,107 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3240,276,043 - 40,371,637 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0321,538,003 - 1,640,039 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl321,539,127 - 1,640,050 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1321,536,272 - 1,629,688 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0321,492,069 - 1,585,224 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03238,587,743 - 38,684,577 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Septin11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528510,562,850 - 10,699,922 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936676852,059 - 941,387 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936676852,115 - 944,387 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl872,543,621 - 72,679,171 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1872,543,641 - 72,679,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2876,788,927 - 76,879,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1725,449,480 - 25,541,029 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl725,448,672 - 25,535,055 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660373,797,467 - 3,894,729 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Septin11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475713,935,081 - 14,039,777 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475713,932,153 - 14,039,741 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Septin11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1115,894,014 - 5,979,781 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Septin11
1470 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:106
Count of miRNA genes:80
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000067222
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14395787821572472Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14395787818558812Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14939329839411170Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141133490630674469Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141133471628389666Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14395787831121464Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14862139853621398Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14395787824886169Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14862139853621398Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141513759431238250Rat

Markers in Region
AW548875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,909,373 - 14,909,477 (+)MAPPERmRatBN7.2
Rnor_6.01416,371,189 - 16,371,292NCBIRnor6.0
Rnor_5.01416,297,181 - 16,297,284UniSTSRnor5.0
RGSC_v3.41416,466,993 - 16,467,096UniSTSRGSC3.4
Celera1414,311,854 - 14,311,957UniSTS
Cytogenetic Map14p22UniSTS
RH136848  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,908,961 - 14,909,164 (+)MAPPERmRatBN7.2
Rnor_6.01416,370,777 - 16,370,979NCBIRnor6.0
Rnor_5.01416,296,769 - 16,296,971UniSTSRnor5.0
RGSC_v3.41416,466,581 - 16,466,783UniSTSRGSC3.4
Celera1414,311,442 - 14,311,644UniSTS
RH 3.4 Map14163.6UniSTS
Cytogenetic Map14p22UniSTS
RH138671  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,907,156 - 14,907,333 (+)MAPPERmRatBN7.2
Rnor_6.01416,368,973 - 16,369,149NCBIRnor6.0
Rnor_5.01416,294,965 - 16,295,141UniSTSRnor5.0
RGSC_v3.41416,464,777 - 16,464,953UniSTSRGSC3.4
Celera1414,309,638 - 14,309,814UniSTS
RH 3.4 Map14165.2UniSTS
Cytogenetic Map14p22UniSTS
RH139145  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,909,378 - 14,909,545 (+)MAPPERmRatBN7.2
Rnor_6.01416,371,194 - 16,371,360NCBIRnor6.0
Rnor_5.01416,297,186 - 16,297,352UniSTSRnor5.0
RGSC_v3.41416,466,998 - 16,467,164UniSTSRGSC3.4
Celera1414,311,859 - 14,312,025UniSTS
RH 3.4 Map14177.4UniSTS
Cytogenetic Map14p22UniSTS
UniSTS:235223  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21414,910,095 - 14,910,270 (+)MAPPERmRatBN7.2
Rnor_6.01416,371,911 - 16,372,085NCBIRnor6.0
Rnor_5.01416,297,903 - 16,298,077UniSTSRnor5.0
RGSC_v3.41416,467,715 - 16,467,889UniSTSRGSC3.4
Celera1414,312,576 - 14,312,750UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC167769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU711417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000067222   ⟹   ENSRNOP00000062626
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,192,769 - 15,275,200 (-)Ensembl
mRatBN7.2 Ensembl1414,907,377 - 14,990,701 (-)Ensembl
Rnor_6.0 Ensembl1416,369,544 - 16,452,890 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091577   ⟹   ENSRNOP00000069146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,191,757 - 15,275,198 (-)Ensembl
mRatBN7.2 Ensembl1414,908,882 - 14,990,773 (-)Ensembl
Rnor_6.0 Ensembl1416,371,979 - 16,452,998 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100885   ⟹   ENSRNOP00000090314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,191,725 - 15,275,200 (-)Ensembl
mRatBN7.2 Ensembl1414,907,350 - 14,990,832 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103937   ⟹   ENSRNOP00000090630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,200,135 - 15,228,107 (-)Ensembl
mRatBN7.2 Ensembl1414,915,428 - 14,943,737 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111632   ⟹   ENSRNOP00000078633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,128,951 - 15,275,200 (-)Ensembl
mRatBN7.2 Ensembl1414,844,580 - 14,990,853 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168068   ⟹   ENSRNOP00000100818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1415,195,550 - 15,275,200 (-)Ensembl
RefSeq Acc Id: NM_001107208   ⟹   NP_001100678
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,191,725 - 15,275,200 (-)NCBI
mRatBN7.21414,907,350 - 14,990,832 (-)NCBI
Rnor_6.01416,369,544 - 16,405,645 (-)NCBI
Rnor_5.01416,295,536 - 16,331,637 (-)NCBI
RGSC_v3.41416,465,348 - 16,501,284 (-)RGD
Celera1414,310,209 - 14,346,008 (-)RGD
Sequence:
RefSeq Acc Id: XM_039091842   ⟹   XP_038947770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,193,254 - 15,275,222 (-)NCBI
mRatBN7.21414,908,880 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091843   ⟹   XP_038947771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,191,748 - 15,275,222 (-)NCBI
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091844   ⟹   XP_038947772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,193,254 - 15,275,222 (-)NCBI
mRatBN7.21414,908,880 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091845   ⟹   XP_038947773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,192,545 - 15,275,222 (-)NCBI
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091846   ⟹   XP_038947774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,191,748 - 15,275,222 (-)NCBI
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091847   ⟹   XP_038947775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,193,254 - 15,275,222 (-)NCBI
mRatBN7.21414,908,880 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091848   ⟹   XP_038947776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,191,748 - 15,275,222 (-)NCBI
mRatBN7.21414,907,844 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091849   ⟹   XP_038947777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,119,760 - 15,275,222 (-)NCBI
mRatBN7.21414,844,759 - 14,990,856 (-)NCBI
RefSeq Acc Id: XM_039091850   ⟹   XP_038947778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,191,748 - 15,275,222 (-)NCBI
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XR_005492931
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,191,748 - 15,275,222 (-)NCBI
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: XR_005492932
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,192,545 - 15,275,222 (-)NCBI
mRatBN7.21414,907,844 - 14,990,856 (-)NCBI
RefSeq Acc Id: XR_005492933
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81415,191,748 - 15,275,222 (-)NCBI
mRatBN7.21414,907,328 - 14,990,856 (-)NCBI
RefSeq Acc Id: NP_001100678   ⟸   NM_001107208
- UniProtKB: A0A8I6AAG9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062626   ⟸   ENSRNOT00000067222
Ensembl Acc Id: ENSRNOP00000069146   ⟸   ENSRNOT00000091577
RefSeq Acc Id: XP_038947777   ⟸   XM_039091849
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZNQ9 (UniProtKB/TrEMBL),   A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947778   ⟸   XM_039091850
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947774   ⟸   XM_039091846
- Peptide Label: isoform X2
- UniProtKB: B3GNI6 (UniProtKB/Swiss-Prot),   B3DMA8 (UniProtKB/Swiss-Prot),   B3GNI4 (UniProtKB/Swiss-Prot),   A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947773   ⟸   XM_039091845
- Peptide Label: isoform X2
- UniProtKB: B3GNI6 (UniProtKB/Swiss-Prot),   B3DMA8 (UniProtKB/Swiss-Prot),   B3GNI4 (UniProtKB/Swiss-Prot),   A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947771   ⟸   XM_039091843
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947776   ⟸   XM_039091848
- Peptide Label: isoform X4
- UniProtKB: A0A8L2QUR1 (UniProtKB/TrEMBL),   A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947772   ⟸   XM_039091844
- Peptide Label: isoform X2
- UniProtKB: B3GNI6 (UniProtKB/Swiss-Prot),   B3DMA8 (UniProtKB/Swiss-Prot),   B3GNI4 (UniProtKB/Swiss-Prot),   A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947770   ⟸   XM_039091842
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AAG9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947775   ⟸   XM_039091847
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JUL7 (UniProtKB/TrEMBL),   A6KK55 (UniProtKB/TrEMBL),   A0A8I6AAG9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090314   ⟸   ENSRNOT00000100885
Ensembl Acc Id: ENSRNOP00000078633   ⟸   ENSRNOT00000111632
Ensembl Acc Id: ENSRNOP00000090630   ⟸   ENSRNOT00000103937
Ensembl Acc Id: ENSRNOP00000100818   ⟸   ENSRNOT00000168068
Protein Domains
Septin-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B3GNI6-F1-model_v2 AlphaFold B3GNI6 1-431 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307405 AgrOrtholog
BioCyc Gene G2FUF-16283 BioCyc
Ensembl Genes ENSRNOG00000002182 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000067222 ENTREZGENE
  ENSRNOT00000091577 ENTREZGENE
  ENSRNOT00000100885 ENTREZGENE
  ENSRNOT00000100885.1 UniProtKB/Swiss-Prot
  ENSRNOT00000111632 ENTREZGENE
  ENSRNOT00000168068 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7456582 IMAGE-MGC_LOAD
InterPro G_SEPTIN_dom UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Septin UniProtKB/Swiss-Prot
KEGG Report rno:305227 UniProtKB/Swiss-Prot
MGC_CLONE MGC:187546 IMAGE-MGC_LOAD
NCBI Gene 305227 ENTREZGENE
PANTHER SEPTIN UniProtKB/Swiss-Prot
Pfam Septin UniProtKB/Swiss-Prot
PhenoGen Septin11 PhenoGen
PIRSF Septin UniProtKB/Swiss-Prot
PROSITE G_SEPTIN UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000002182 RatGTEx
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A0G2JUL7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNQ9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAG9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QUR1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LIS7_RAT UniProtKB/TrEMBL
  A6KK55 ENTREZGENE, UniProtKB/TrEMBL
  B3DMA8 ENTREZGENE
  B3GNI4 ENTREZGENE
  B3GNI6 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary B3DMA8 UniProtKB/Swiss-Prot
  B3GNI4 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-05 Septin11  septin 11  Sept11  septin 11  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Sept11  septin 11  Sept6_predicted  septin 6 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Sept6_predicted  septin 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED