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Gene: Slc23a3 (solute carrier family 23, member 3) Rattus norvegicus

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Symbol:

Slc23a3

Name:

solute carrier family 23, member 3

RGD ID:

1307402

Description:

Predicted to enable transmembrane transporter activity. Predicted to be involved in hypoxanthine transport. Predicted to be located in membrane. Orthologous to human SLC23A3 (solute carrier family 23 member 3); INTERACTS WITH 17beta-estradiol; 3-chloropropane-1,2-diol; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC367298; solute carrier family 23 (nucleobase transporters), member 3; solute carrier family 23 member 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC23A3 (solute carrier family 23 member 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc23a3 (solute carrier family 23 (nucleobase transporters), member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc23a3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC23A3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC23A3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc23a3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC23A3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC23A3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc23a3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc23a3 (solute carrier family 23 member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Slc23a3 (solute carrier family 23 (nucleobase transporters), member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC23A3 (solute carrier family 23 member 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc23a3 (solute carrier family 23 member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc23a3 (solute carrier family 23 member 3)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	C51E3.6	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	R11E3.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	T07G12.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	T07G12.4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	T07G12.5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	Y59E9AL.4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc23a3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc23a3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,071,286 - 84,081,951 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	84,071,471 - 84,080,037 (-)	Ensembl				GRCr8
mRatBN7.2	9	76,622,621 - 76,633,188 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,622,800 - 76,631,366 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	85,067,277 - 85,075,848 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,196,181 - 90,204,752 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,582,381 - 88,590,952 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,328,007 - 82,338,576 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,328,173 - 82,336,806 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	82,097,270 - 82,107,837 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	74,409,051 - 74,417,617 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	74,193,265 - 74,201,831 (-)	NCBI		Celera
RGSC_v3.1	9	74,556,156 - 74,564,594 (-)	NCBI
Cytogenetic Map	9	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cerebrotendinous xanthomatosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (ISO)

acetamide (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

diquat (ISO)

diuron (EXP)

endosulfan (EXP)

furan (EXP,ISO)

gentamycin (EXP)

hydralazine (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

methylmercury chloride (ISO)

ozone (ISO)

propanal (ISO)

rifampicin (ISO)

S-nitrosoglutathione (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

streptozocin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (EXP)

Triptolide (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

hypoxanthine transport (IEA,ISO)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

Molecular Function

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Slc23a3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	84,071,286 - 84,081,951 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	84,071,471 - 84,080,037 (-)	Ensembl				GRCr8
mRatBN7.2	9	76,622,621 - 76,633,188 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	76,622,800 - 76,631,366 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	85,067,277 - 85,075,848 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	90,196,181 - 90,204,752 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	88,582,381 - 88,590,952 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	82,328,007 - 82,338,576 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	82,328,173 - 82,336,806 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	82,097,270 - 82,107,837 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	74,409,051 - 74,417,617 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	74,193,265 - 74,201,831 (-)	NCBI		Celera
RGSC_v3.1	9	74,556,156 - 74,564,594 (-)	NCBI
Cytogenetic Map	9	q33	NCBI

SLC23A3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	219,161,465 - 219,170,029 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	219,161,465 - 219,170,095 (-)	Ensembl			hg38	GRCh38
GRCh37	2	220,026,187 - 220,034,751 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	219,734,431 - 219,742,959 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	219,851,694 - 219,860,220	NCBI
Celera	2	213,795,898 - 213,804,533 (-)	NCBI		Celera
Cytogenetic Map	2	q35	NCBI
HuRef	2	211,879,743 - 211,888,378 (-)	NCBI		HuRef
CHM1_1	2	220,033,513 - 220,042,159 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	219,649,889 - 219,658,452 (-)	NCBI		T2T-CHM13v2.0

Slc23a3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	75,102,185 - 75,112,113 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	75,102,185 - 75,110,534 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	75,125,541 - 75,135,223 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	75,125,541 - 75,133,890 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	75,122,115 - 75,130,464 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	75,008,751 - 75,017,098 (-)	NCBI		MGSCv36	mm8
Celera	1	75,616,138 - 75,624,859 (-)	NCBI		Celera
Cytogenetic Map	1	C4	NCBI
cM Map	1	38.6	NCBI

Slc23a3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	14,271,343 - 14,278,233 (+)	Ensembl
ChiLan1.0	NW_004955453	14,271,343 - 14,278,233 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC23A3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	121,792,092 - 121,800,913 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	121,806,659 - 121,815,878 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	106,418,754 - 106,427,931 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	225,011,825 - 225,020,503 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	225,011,825 - 225,020,503 (-)	Ensembl			panPan2	panpan1.1

SLC23A3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	25,720,935 - 25,727,589 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	25,720,809 - 25,732,831 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	26,546,960 - 26,553,851 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	25,736,008 - 25,743,224 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	25,736,738 - 25,750,868 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	25,640,435 - 25,647,646 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	25,575,679 - 25,582,566 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	25,596,346 - 25,603,495 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc23a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	175,236,170 - 175,244,248 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936569	1,578,993 - 1,585,454 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936569	1,578,977 - 1,585,903 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC23A3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	121,193,947 - 121,203,990 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	121,105,800 - 121,203,990 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	134,143,875 - 134,232,493 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC23A3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	105,072,114 - 105,078,809 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	94,317,464 - 94,328,473 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc23a3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624823	5,852,454 - 5,858,373 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624823	5,852,164 - 5,858,938 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc23a3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	148,485,781 - 148,495,361 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc23a3
73 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	46
Count of miRNA genes:	42
Interacting mature miRNAs:	46
Transcripts:	ENSRNOT00000024667
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
61352	Bp34	Blood pressure QTL 34	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	82168823	86720295	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	6	57	84	90	89	58	86	58	6	333	173	11	61	81	89	31	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000024667 ⟹ ENSRNOP00000024667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	84,071,471 - 84,080,037 (-)	Ensembl
mRatBN7.2 Ensembl	9	76,622,800 - 76,631,366 (-)	Ensembl
Rnor_6.0 Ensembl	9	82,328,173 - 82,336,806 (-)	Ensembl

RefSeq Acc Id:

NM_001109006 ⟹ NP_001102476

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,071,471 - 84,080,037 (-)	NCBI
mRatBN7.2	9	76,622,800 - 76,631,366 (-)	NCBI
Rnor_6.0	9	82,328,188 - 82,336,754 (-)	NCBI
Rnor_5.0	9	82,097,270 - 82,107,837 (-)	NCBI
RGSC_v3.4	9	74,409,051 - 74,417,617 (-)	RGD
Celera	9	74,193,265 - 74,201,831 (-)	RGD

Sequence:

show sequence

CCAAGGCAGCCAAGACGCAATCAAGTCAGGGCAGCATGAGCAGATCACCTCCCCATCCCATTCC
ACTTCTATCTGTGGGCTCCCAGGATACCCCTGCTCCCCGTCCACCACTGCTACCCCCTCTCCAG
GATCCCTCCTCCCGCTCTTGGGCCTCTTGGTGTGGGCCTTCCACCTGGGGGCTCAGCTGTCTTC
TGGCTCTACAGCATTTCCTGGTCTTGACATCTCTGCTCTGGGCCTCCCACCTGCTGCTGCTTCA
CAGTCTCCCCCCAGGAGGGCTCTCATACCCACCTGCTCAGCTCCTGGCTTCCAGTTTCTTCTCA
TGTGGCATGTCTACGGTCCTGCAGACTTGGATGGGCAGCAGGCTGCCTCTAATCCAGGCTCCGT
CCCTAGAGTTTCTTATCCCTGCACTGGTGCTGACAAACCAGAAGCTACCTCTGATGACCAAGAC
ACCTGGAAATGCCTCCCTCTCCCTACGCCTGTGTAGTTTGACAAGAAGTTGCCATGGCCCGGAG
CTCTGGAACACATCTCTCCGAGAGGTGTCGGGGGCAGTGGTGATGTCCGGGCTGCTGCAGGGCA
CTATGGGACTTCTAGGGGTGCCTGGTCGTGTGTTTCCCTACTGTGGGCCACTGGTGCTGGCTCC
CAGCCTGGTTGTGGCAGGGCTCTCTGCCCACAAGGAAGTGGCCCAGTTCTGTTCTGCTCACTGG
GGCCTGGCCTTGCTGCTCATCCTGCTCATGGTGGTATGCTCCCAGCACTTGGGGTCCTGCCAGG
TACCCCTTTGCTCCTGGAGGCCAGCTTCAACCTCTTCAACTCACATTTATATTCCTATCTTCCG
ACTCCTTTCGGTGCTTGCCCCTGTGGCCTGTGTGTGGCTCATCTCTGCCTGTCTGGGTCTGAGT
GTTATCCCCTTGCAGCTGTCTGAGCCCTCCGATGCACCGTGGTTTTGGCTGCCTCACCCAGGTG
AGTGGGAATGGCCCTTGCTGACACCCAAGGCCCTGGCTGCAGGGATCTCCATGGCTTTGGCAGC
CTCCACCAGCTCCTTGGGTTGCTATGCCCTGTGTGGCCAGCTGCTGCATTTGTCTCCTCCACCA
CCACATGCCTGTAGTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCAGGGCTGCTGG
GGAGTCCCCTGGGCACTGCATCCAGCTTCCCCAATGTAGGCACAGTGAGTCTTTTCCAGACTGG
TTCTCGGAGAGTGGCCCACCTAGTGGGACTGTTCTGCATGGGGCTTGGACTCTCCCCAAGGCTG
GCTCAGTTATTTACCAACATCCCACTGCCTGTGCTTGGTGGGGTACTGGGAGTGACCCAGGCTG
TAGTTCTGTCTGCTGGATTCTCCAGCTTCCACCTGGCTGACATTGACTCTGGACGAAACGTCTT
CATTGTGGGCTTCTCCATCTTCATGGCTTTGCTTTTGCCAAGGTGGCTCCGGGAAGCTCCAATC
CTCCTTAACACAGGCTGGAGCCCCATGGATATGTTTCTGCGTTCTTTGCTGGCAGAACCCATTT
TCCTAGCTGGTCTATTGGGCTTTCTCCTAGAAAACACTATATCTGGTACACGGATTGAGAGAGG
CTTAGGTCAGGCCCTGCCAACTTCTTTCACTGCCCAAGAAACGCAAATGCTTCAGAAGTCCAGG
AAGAAAGCCGCTCAAGAGTATGGGCTTCCTTTGTCTATCAAAAACCTGTGTTCCTGTATCCCAC
AGCCTCTCCGTTGTCTCTGTCCAATGCCTGAAGACTCTGGGGATGAAGGAGGATCCTCTAAAAC
AGGAGAGACAGCCGACTTGTTGCCTAACTCAGGGGAGTCAAGCTCTCCGGATGGCAGAGAAGGG
TTTAGGTCCTAGTAATTACCAAAACCACCATTTTTGTCTTAGTTTAGCAGTAACTCCCACCTTG
CTGGAGTCTTGCCCCCAAGGCCCGCTAGTAGGATGGGCTTTCTTTCCTCCTCTTAATAATTAGA
CTTGAGTGTTCAGGAGCAGGGGTATGGTTTAGTAGGTCAGAAGTGAATAAATTAGATTTTTGCC
TGTA

hide sequence

RefSeq Acc Id:

XM_006245260 ⟹ XP_006245322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,071,286 - 84,081,951 (-)	NCBI
mRatBN7.2	9	76,622,621 - 76,633,188 (-)	NCBI
Rnor_6.0	9	82,328,007 - 82,338,576 (-)	NCBI
Rnor_5.0	9	82,097,270 - 82,107,837 (-)	NCBI

Sequence:

show sequence

GCATATCCTGGGTGGGTACCAGCCTTGTGGATCCTGATGGTTCAAAGCACACATCCAGTTGAGG
TCCCAGAATATAAGCTCGCTCTGCTGATCTCCTCACAAGGTGACTTATGGAAGTAGCTGGTTTT
GAAGAACAAGAGCTGGGTCATCACTGGAAGAACGGATCTTTGGTGTATTTGGACCTCTAGCCTA
TTGCTAAAGATCACTCAGGGAGTGTGAGGACTGGGAATAAAGGTCTGTGGGCTGGTGGGAGCTG
CTGCCTCCAAGGGGTCATCGTATAATATTTTGTTATGCAAAGGATGGCCTTGCTGGGCACCAAT
GAAAGGAGAAGCCCTTGGTCCTGCCAAGGTTGGACCCCCAGTGTCCGGGATTGTGGGGAGAGAA
GCTGGTCTAGAAGCAGAGGCTATGGATGAACATTCTTGAGGGAGGGGTCCAGTACTCAGCTGCT
AGGTTAATGGCTGATGGAATTTGCACAAGAGCTGGGCAAAGCATTTCCTGGTCTTGACATCTCT
GCTCTGGGCCTCCCACCTGCTGCTGCTTCACAGTCTCCCCCCAGGAGGGCTCTCATACCCACCT
GCTCAGCTCCTGGCTTCCAGTTTCTTCTCATGTGGCATGTCTACGGTCCTGCAGACTTGGATGG
GCAGCAGGCTGCCTCTAATCCAGGCTCCGTCCCTAGAGTTTCTTATCCCTGCACTGGTGCTGAC
AAACCAGAAGCTACCTCTGATGACCAAGACACCTGGAAATGCCTCCCTCTCCCTACGCCTGTGT
AGTTTGACAAGAAGTTGCCATGGCCCGGAGCTCTGGAACACATCTCTCCGAGAGGTGTCGGGGG
CAGTGGTGATGTCCGGGCTGCTGCAGGGCACTATGGGACTTCTAGGGGTGCCTGGTCGTGTGTT
TCCCTACTGTGGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTCTCTGCCCACAAG
GAAGTGGCCCAGTTCTGTTCTGCTCACTGGGGCCTGGCCTTGCTGCTCATCCTGCTCATGGTGG
TATGCTCCCAGCACTTGGGGTCCTGCCAGGTACCCCTTTGCTCCTGGAGGCCAGCTTCAACCTC
TTCAACTCACATTTATATTCCTATCTTCCGACTCCTTTCGGTGCTTGCCCCTGTGGCCTGTGTG
TGGCTCATCTCTGCCTGTCTGGGTCTGAGTGTTATCCCCTTGCAGCTGTCTGAGCCCTCCGATG
CACCGTGGTTTTGGCTGCCTCACCCAGGTGAGTGGGAATGGCCCTTGCTGACACCCAAGGCCCT
GGCTGCAGGGATCTCCATGGCTTTGGCAGCCTCCACCAGCTCCTTGGGTTGCTATGCCCTGTGT
GGCCAGCTGCTGCATTTGTCTCCTCCACCACCACATGCCTGTAGTCGAGGGCTGAGCCTGGAGG
GGCTGGGCAGTGTGCTGGCAGGGCTGCTGGGGAGTCCCCTGGGCACTGCATCCAGCTTCCCCAA
TGTAGGCACAGTGAGTCTTTTCCAGACTGGTTCTCGGAGAGTGGCCCACCTAGTGGGACTGTTC
TGCATGGGGCTTGGACTCTCCCCAAGGCTGGCTCAGTTATTTACCAACATCCCACTGCCTGTGC
TTGGTGGGGTACTGGGAGTGACCCAGGCTGTAGTTCTGTCTGCTGGATTCTCCAGCTTCCACCT
GGCTGACATTGACTCTGGACGAAACGTCTTCATTGTGGGCTTCTCCATCTTCATGGCTTTGCTT
TTGCCAAGGTGGCTCCGGGAAGCTCCAATCCTCCTTAACACAGGCTGGAGCCCCATGGATATGT
TTCTGCGTTCTTTGCTGGCAGAACCCATTTTCCTAGCTGGTCTATTGGGCTTTCTCCTAGAAAA
CACTATATCTGGTACACGGATTGAGAGAGGCTTAGGTCAGGCCCTGCCAACTTCTTTCACTGCC
CAAGAAACGCAAATGCTTCAGAAGTCCAGGAAGAAAGCCGCTCAAGAGTATGGGCTTCCTTTGT
CTATCAAAAACCTGTGTTCCTGTATCCCACAGCCTCTCCGTTGTCTCTGTCCAATGCCTGAAGA
CTCTGGGGATGAAGGAGGATCCTCTAAAACAGGAGAGACAGCCGACTTGTTGCCTAACTCAGGG
GAGTCAAGCTCTCCGGATGGCAGAGAAGGGTTTAGGTCCTAGTAATTACCAAAACCACCATTTT
TGTCTTAGTTTAGCAGTAACTCCCACCTTGCTGGAGTCTTGCCCCCAAGGCCCGCTAGTAGGAT
GGGCTTTCTTTCCTCCTCTTAATAATTAGACTTGAGTGTTCAGGAGCAGGGGTATGGTTTAGTA
GGTCAGAAGTGAATAAATTAGATTTTTGCCTGTAAACTGCCAAGGTTGCTTGAATGAACTCTAG
CATTCAAATATTTACTGAGTGCTTCCCATGTGCAAGGTCCTACATCTACGGAAATGAATATGAC
AGGGTCCCTGCTCTCTCCCTGCATTTAAGATTTAAATAACTAAAATGTAAAGCAGAGGACAATC
TATAATAAAGATGAAAATACAGA

hide sequence

RefSeq Acc Id:

XM_008767280 ⟹ XP_008765502

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,071,286 - 84,081,951 (-)	NCBI
mRatBN7.2	9	76,622,621 - 76,633,188 (-)	NCBI
Rnor_6.0	9	82,328,007 - 82,338,576 (-)	NCBI

Sequence:

show sequence

GCATATCCTGGGTGGGTACCAGCCTTGTGGATCCTGATGGTTCAAAGCACACATCCAGTTGAGG
TCCCAGAATATAAGCTCGCTCTGCTGATCTCCTCACAAGGTGACTTATGGAAGTAGCTGGTTTT
GAAGAACAAGAGCTGGGTCATCACTGGAAGAACGGATCTTTGGTGTATTTGGACCTCTAGCCTA
TTGCTAAAGATCACTCAGGGAGTGTGAGGACTGGGAATAAAGGTCTGTGGGCTGGTGGGAGCTG
CTGCCTCCAAGGGGTCATCGTATAATATTTTGTTATGCAAAGGATGGCCTTGCTGGGCACCAAT
GAAAGGAGAAGCCCTTGGTCCTGCCAAGGTTGGACCCCCAGTGTCCGGGATTGTGGGGAGAGCA
TTTCCTGGTCTTGACATCTCTGCTCTGGGCCTCCCACCTGCTGCTGCTTCACAGTCTCCCCCCA
GGAGGGCTCTCATACCCACCTGCTCAGCTCCTGGCTTCCAGTTTCTTCTCATGTGGCATGTCTA
CGGTCCTGCAGACTTGGATGGGCAGCAGGCTGCCTCTAATCCAGGCTCCGTCCCTAGAGTTTCT
TATCCCTGCACTGGTGCTGACAAACCAGAAGCTACCTCTGATGACCAAGACACCTGGAAATGCC
TCCCTCTCCCTACGCCTGTGTAGTTTGACAAGAAGTTGCCATGGCCCGGAGCTCTGGAACACAT
CTCTCCGAGAGGTGTCGGGGGCAGTGGTGATGTCCGGGCTGCTGCAGGGCACTATGGGACTTCT
AGGGGTGCCTGGTCGTGTGTTTCCCTACTGTGGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTG
GCAGGGCTCTCTGCCCACAAGGAAGTGGCCCAGTTCTGTTCTGCTCACTGGGGCCTGGCCTTGC
TGCTCATCCTGCTCATGGTGGTATGCTCCCAGCACTTGGGGTCCTGCCAGGTACCCCTTTGCTC
CTGGAGGCCAGCTTCAACCTCTTCAACTCACATTTATATTCCTATCTTCCGACTCCTTTCGGTG
CTTGCCCCTGTGGCCTGTGTGTGGCTCATCTCTGCCTGTCTGGGTCTGAGTGTTATCCCCTTGC
AGCTGTCTGAGCCCTCCGATGCACCGTGGTTTTGGCTGCCTCACCCAGGTGAGTGGGAATGGCC
CTTGCTGACACCCAAGGCCCTGGCTGCAGGGATCTCCATGGCTTTGGCAGCCTCCACCAGCTCC
TTGGGTTGCTATGCCCTGTGTGGCCAGCTGCTGCATTTGTCTCCTCCACCACCACATGCCTGTA
GTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCAGGGCTGCTGGGGAGTCCCCTGGG
CACTGCATCCAGCTTCCCCAATGTAGGCACAGTGAGTCTTTTCCAGACTGGTTCTCGGAGAGTG
GCCCACCTAGTGGGACTGTTCTGCATGGGGCTTGGACTCTCCCCAAGGCTGGCTCAGTTATTTA
CCAACATCCCACTGCCTGTGCTTGGTGGGGTACTGGGAGTGACCCAGGCTGTAGTTCTGTCTGC
TGGATTCTCCAGCTTCCACCTGGCTGACATTGACTCTGGACGAAACGTCTTCATTGTGGGCTTC
TCCATCTTCATGGCTTTGCTTTTGCCAAGGTGGCTCCGGGAAGCTCCAATCCTCCTTAACACAG
GCTGGAGCCCCATGGATATGTTTCTGCGTTCTTTGCTGGCAGAACCCATTTTCCTAGCTGGTCT
ATTGGGCTTTCTCCTAGAAAACACTATATCTGGTACACGGATTGAGAGAGGCTTAGGTCAGGCC
CTGCCAACTTCTTTCACTGCCCAAGAAACGCAAATGCTTCAGAAGTCCAGGAAGAAAGCCGCTC
AAGAGTATGGGCTTCCTTTGTCTATCAAAAACCTGTGTTCCTGTATCCCACAGCCTCTCCGTTG
TCTCTGTCCAATGCCTGAAGACTCTGGGGATGAAGGAGGATCCTCTAAAACAGGAGAGACAGCC
GACTTGTTGCCTAACTCAGGGGAGTCAAGCTCTCCGGATGGCAGAGAAGGGTTTAGGTCCTAGT
AATTACCAAAACCACCATTTTTGTCTTAGTTTAGCAGTAACTCCCACCTTGCTGGAGTCTTGCC
CCCAAGGCCCGCTAGTAGGATGGGCTTTCTTTCCTCCTCTTAATAATTAGACTTGAGTGTTCAG
GAGCAGGGGTATGGTTTAGTAGGTCAGAAGTGAATAAATTAGATTTTTGCCTGTAAACTGCCAA
GGTTGCTTGAATGAACTCTAGCATTCAAATATTTACTGAGTGCTTCCCATGTGCAAGGTCCTAC
ATCTACGGAAATGAATATGACAGGGTCCCTGCTCTCTCCCTGCATTTAAGATTTAAATAACTAA
AATGTAAAGCAGAGGACAATCTATAATAAAGATGAAAATACAGA

hide sequence

RefSeq Acc Id:

XM_039083972 ⟹ XP_038939900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,071,286 - 84,081,951 (-)	NCBI
mRatBN7.2	9	76,622,621 - 76,633,188 (-)	NCBI

RefSeq Acc Id:

XM_039083973 ⟹ XP_038939901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,071,286 - 84,081,951 (-)	NCBI
mRatBN7.2	9	76,622,621 - 76,633,188 (-)	NCBI

RefSeq Acc Id:

XM_039083974 ⟹ XP_038939902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,071,286 - 84,081,951 (-)	NCBI
mRatBN7.2	9	76,622,621 - 76,633,188 (-)	NCBI

RefSeq Acc Id:

XM_063267511 ⟹ XP_063123581

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	84,071,286 - 84,081,403 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102476	(Get FASTA)	NCBI Sequence Viewer
	XP_006245322	(Get FASTA)	NCBI Sequence Viewer
	XP_008765502	(Get FASTA)	NCBI Sequence Viewer
	XP_038939900	(Get FASTA)	NCBI Sequence Viewer
	XP_038939901	(Get FASTA)	NCBI Sequence Viewer
	XP_038939902	(Get FASTA)	NCBI Sequence Viewer
	XP_063123581	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75382	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000024667
	ENSRNOP00000024667.3

RefSeq Acc Id:

NP_001102476 ⟸ NM_001109006

- UniProtKB:

D3ZG28 (UniProtKB/TrEMBL), A6JVX4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRSPPHPIPLLSVGSQDTPAPRPPLLPPLQDPSSRSWASWCGPSTWGLSCLLALQHFLVLTSL
LWASHLLLLHSLPPGGLSYPPAQLLASSFFSCGMSTVLQTWMGSRLPLIQAPSLEFLIPALVLT
NQKLPLMTKTPGNASLSLRLCSLTRSCHGPELWNTSLREVSGAVVMSGLLQGTMGLLGVPGRVF
PYCGPLVLAPSLVVAGLSAHKEVAQFCSAHWGLALLLILLMVVCSQHLGSCQVPLCSWRPASTS
STHIYIPIFRLLSVLAPVACVWLISACLGLSVIPLQLSEPSDAPWFWLPHPGEWEWPLLTPKAL
AAGISMALAASTSSLGCYALCGQLLHLSPPPPHACSRGLSLEGLGSVLAGLLGSPLGTASSFPN
VGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTNIPLPVLGGVLGVTQAVVLSAGFSSFHL
ADIDSGRNVFIVGFSIFMALLLPRWLREAPILLNTGWSPMDMFLRSLLAEPIFLAGLLGFLLEN
TISGTRIERGLGQALPTSFTAQETQMLQKSRKKAAQEYGLPLSIKNLCSCIPQPLRCLCPMPED
SGDEGGSSKTGETADLLPNSGESSSPDGREGFRS

hide sequence

RefSeq Acc Id:

XP_006245322 ⟸ XM_006245260

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSTVLQTWMGSRLPLIQAPSLEFLIPALVLTNQKLPLMTKTPGNASLSLRLCSLTRSCHGPELW
NTSLREVSGAVVMSGLLQGTMGLLGVPGRVFPYCGPLVLAPSLVVAGLSAHKEVAQFCSAHWGL
ALLLILLMVVCSQHLGSCQVPLCSWRPASTSSTHIYIPIFRLLSVLAPVACVWLISACLGLSVI
PLQLSEPSDAPWFWLPHPGEWEWPLLTPKALAAGISMALAASTSSLGCYALCGQLLHLSPPPPH
ACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQ
LFTNIPLPVLGGVLGVTQAVVLSAGFSSFHLADIDSGRNVFIVGFSIFMALLLPRWLREAPILL
NTGWSPMDMFLRSLLAEPIFLAGLLGFLLENTISGTRIERGLGQALPTSFTAQETQMLQKSRKK
AAQEYGLPLSIKNLCSCIPQPLRCLCPMPEDSGDEGGSSKTGETADLLPNSGESSSPDGREGFR
S

hide sequence

RefSeq Acc Id:

XP_008765502 ⟸ XM_008767280

- Peptide Label:

isoform X2

- Sequence:

show sequence

MSTVLQTWMGSRLPLIQAPSLEFLIPALVLTNQKLPLMTKTPGNASLSLRLCSLTRSCHGPELW
NTSLREVSGAVVMSGLLQGTMGLLGVPGRVFPYCGPLVLAPSLVVAGLSAHKEVAQFCSAHWGL
ALLLILLMVVCSQHLGSCQVPLCSWRPASTSSTHIYIPIFRLLSVLAPVACVWLISACLGLSVI
PLQLSEPSDAPWFWLPHPGEWEWPLLTPKALAAGISMALAASTSSLGCYALCGQLLHLSPPPPH
ACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQ
LFTNIPLPVLGGVLGVTQAVVLSAGFSSFHLADIDSGRNVFIVGFSIFMALLLPRWLREAPILL
NTGWSPMDMFLRSLLAEPIFLAGLLGFLLENTISGTRIERGLGQALPTSFTAQETQMLQKSRKK
AAQEYGLPLSIKNLCSCIPQPLRCLCPMPEDSGDEGGSSKTGETADLLPNSGESSSPDGREGFR
S

hide sequence

Ensembl Acc Id:

ENSRNOP00000024667 ⟸ ENSRNOT00000024667

RefSeq Acc Id:	XP_038939902 ⟸ XM_039083974
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038939901 ⟸ XM_039083973
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038939900 ⟸ XM_039083972
- Peptide Label:	isoform X1
- UniProtKB:	D3ZG28 (UniProtKB/TrEMBL), A6JVX4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123581 ⟸ XM_063267511
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZG28-F1-model_v2	AlphaFold	D3ZG28	1-610	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696765

Promoter ID:

EPDNEW_R7289

Type:

initiation region

Name:

Slc23a3_1

Description:

solute carrier family 23, member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	82,336,736 - 82,336,796	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307402	AgrOrtholog
BioCyc Gene	G2FUF-27097	BioCyc
Ensembl Genes	ENSRNOG00000018266	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000024667	ENTREZGENE
	ENSRNOT00000024667.7	UniProtKB/TrEMBL
InterPro	Xant/urac/vitC	UniProtKB/TrEMBL
KEGG Report	rno:367298	UniProtKB/TrEMBL
NCBI Gene	367298	ENTREZGENE
PANTHER	XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	Xan_ur_permease	UniProtKB/TrEMBL
PhenoGen	Slc23a3	PhenoGen
RatGTEx	ENSRNOG00000018266	RatGTEx
UniProt	A6JVX4	ENTREZGENE, UniProtKB/TrEMBL
	D3ZG28	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-02	Slc23a3	solute carrier family 23, member 3	Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc23a3	solute carrier family 23 (nucleobase transporters), member 3	Slc23a3_predicted	solute carrier family 23 (nucleobase transporters), member 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc23a3_predicted	solute carrier family 23 (nucleobase transporters), member 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar