Wdr89 (WD repeat domain 89) - Rat Genome Database

Name: Wdr89
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Wdr89 (WD repeat domain 89) Rattus norvegicus

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Symbol:

Wdr89

Name:

WD repeat domain 89

RGD ID:

1307393

Description:

Predicted to act upstream of or within corpus callosum development and ventricular system development. Orthologous to human WDR89 (WD repeat domain 89); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC314243; MGC108878; RGD1307393; similar to hypothetical protein MGC9907; WD repeat-containing protein 89

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR89 (WD repeat domain 89)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Wdr89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr89 (WD repeat domain 89)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ZNF324 (zinc finger protein 324)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	WDR89 (WD repeat domain 89)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wdr89 (WD repeat domain 89)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	wdr89 (WD repeat domain 89)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12134	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YNL035C	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wdr89	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	100,086,169 - 100,117,796 (-)	NCBI		GRCr8
mRatBN7.2	6	94,350,468 - 94,382,085 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	94,350,303 - 94,382,026 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	94,744,029 - 94,750,406 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	95,042,501 - 95,048,878 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	94,471,408 - 94,477,785 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	98,599,456 - 98,631,512 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	98,599,723 - 98,606,109 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	108,017,409 - 108,049,159 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	98,231,300 - 98,237,690 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	98,234,755 - 98,241,146 (-)	NCBI
Celera	6	92,776,713 - 92,783,104 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

copper(II) sulfate (ISO)

decabromodiphenyl ether (EXP)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

endosulfan (EXP)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

formaldehyde (ISO)

lead(0) (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

sodium arsenite (ISO)

Soman (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

tungsten (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

corpus callosum development (IEA,ISO)

ventricular system development (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Wdr89
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	100,086,169 - 100,117,796 (-)	NCBI		GRCr8
mRatBN7.2	6	94,350,468 - 94,382,085 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	94,350,303 - 94,382,026 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	94,744,029 - 94,750,406 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	95,042,501 - 95,048,878 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	94,471,408 - 94,477,785 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	98,599,456 - 98,631,512 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	98,599,723 - 98,606,109 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	108,017,409 - 108,049,159 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	98,231,300 - 98,237,690 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	98,234,755 - 98,241,146 (-)	NCBI
Celera	6	92,776,713 - 92,783,104 (-)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

WDR89
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	63,597,039 - 63,641,871 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	63,597,039 - 63,641,871 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	64,063,757 - 64,108,589 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	63,133,510 - 63,178,344 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	63,133,510 - 63,178,344	NCBI
Celera	14	44,114,416 - 44,159,247 (-)	NCBI		Celera
Cytogenetic Map	14	q23.2	NCBI
HuRef	14	44,230,434 - 44,274,975 (-)	NCBI		HuRef
CHM1_1	14	64,002,766 - 64,047,647 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	57,804,429 - 57,849,265 (-)	NCBI		T2T-CHM13v2.0

Wdr89
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	75,677,368 - 75,716,311 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	75,677,370 - 75,716,311 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	75,630,594 - 75,669,537 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	75,630,596 - 75,669,537 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	76,731,581 - 76,770,524 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	76,549,434 - 76,588,371 (-)	NCBI		MGSCv36	mm8
Celera	12	76,730,938 - 76,769,912 (-)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	32.89	NCBI

Wdr89
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	6,203,391 - 6,204,548 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	6,171,553 - 6,204,818 (+)	NCBI	ChiLan1.0	ChiLan1.0

WDR89
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	64,701,695 - 64,750,622 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	63,918,210 - 63,967,136 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	44,170,527 - 44,220,090 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	62,427,017 - 62,476,018 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	62,428,742 - 62,429,905 (-)	Ensembl	panpan1.1		panPan2

WDR89
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	38,121,649 - 38,157,178 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	38,121,798 - 38,122,961 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	37,813,659 - 37,849,642 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	38,347,261 - 38,383,287 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	38,344,532 - 38,383,145 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	37,964,309 - 38,000,279 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	38,036,906 - 38,073,061 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	38,397,091 - 38,433,470 (-)	NCBI		UU_Cfam_GSD_1.0

Wdr89
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	66,684,354 - 66,774,095 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	7,417,154 - 7,528,526 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	7,417,604 - 7,452,601 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR89
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	194,439,820 - 194,475,872 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	194,439,825 - 194,475,876 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	216,445,622 - 216,461,215 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR89
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	40,793,441 - 40,835,582 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666053	28,965,931 - 29,031,900 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr89
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	37,419,141 - 37,420,316 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	37,384,138 - 37,420,878 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Wdr89
84 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	474
Count of miRNA genes:	224
Interacting mature miRNAs:	260
Transcripts:	ENSRNOT00000006860
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	45790088	104200226	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	72202632	115200186	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	89762877	106752806	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	58632962	103632962	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	57730540	104085867	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	73463459	109394713	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	82523650	110548006	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	67262953	112262953	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	72202632	117202632	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	83190345	106747639	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	71201409	116201409	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	61747639	106747639	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	57730540	104085867	Rat
1300076	Glom8	Glomerulus QTL 8	7	9e-09	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat

Markers in Region

D6Got120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	94,358,005 - 94,358,182 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	98,607,251 - 98,607,427	NCBI	Rnor6.0
Rnor_5.0	6	108,024,940 - 108,025,116	UniSTS	Rnor5.0
RGSC_v3.4	6	98,238,831 - 98,239,008	RGD	RGSC3.4
RGSC_v3.4	6	98,238,832 - 98,239,008	UniSTS	RGSC3.4
RGSC_v3.1	6	98,242,288 - 98,242,464	RGD
Celera	6	92,784,246 - 92,784,422	UniSTS
RH 3.4 Map	6	668.1	RGD
RH 3.4 Map	6	668.1	UniSTS
Cytogenetic Map	6	q24	UniSTS

BG373116

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	94,352,161 - 94,352,321 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	98,601,408 - 98,601,567	NCBI	Rnor6.0
Rnor_5.0	6	108,019,097 - 108,019,256	UniSTS	Rnor5.0
RGSC_v3.4	6	98,232,988 - 98,233,147	UniSTS	RGSC3.4
Celera	6	92,778,401 - 92,778,560	UniSTS
RH 3.4 Map	6	686.1	UniSTS
Cytogenetic Map	6	q24	UniSTS

RH131625

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	94,350,623 - 94,350,811 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	98,599,870 - 98,600,057	NCBI	Rnor6.0
Rnor_5.0	6	108,017,559 - 108,017,746	UniSTS	Rnor5.0
RGSC_v3.4	6	98,231,450 - 98,231,637	UniSTS	RGSC3.4
Celera	6	92,776,863 - 92,777,050	UniSTS
RH 3.4 Map	19	318.3	UniSTS
Cytogenetic Map	6	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001014078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000006860 ⟹ ENSRNOP00000006860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	94,350,303 - 94,382,026 (-)	Ensembl
Rnor_6.0 Ensembl	6	98,599,723 - 98,606,109 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103901 ⟹ ENSRNOP00000095204

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	94,350,339 - 94,382,026 (-)	Ensembl

RefSeq Acc Id:

NM_001014078 ⟹ NP_001014100

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,086,169 - 100,092,559 (-)	NCBI
mRatBN7.2	6	94,350,474 - 94,356,864 (-)	NCBI
Rnor_6.0	6	98,599,720 - 98,606,109 (-)	NCBI
Rnor_5.0	6	108,017,409 - 108,049,159 (-)	NCBI
RGSC_v3.4	6	98,231,300 - 98,237,690 (-)	RGD
Celera	6	92,776,713 - 92,783,104 (-)	RGD

Sequence:

show sequence

GCTGCTGAGCTCACAGGTGCTCTCCACAGCCGGGCCGGAAGCTTTGCGATAACTGCCACAGGGC
AACCTTTCTCCAAAGTTTCCCGTGCTTATGTGTAAGAAGAGTAAACCCTGAGGTCAGACTCTGG
AAGTTTTGACGCAGTTCCTGATGAGTTTTATATCCGTGGATGCTTCTACTGACATGGAGAAGAT
TAAGGACCAGTTTGCTAATCTGCATATTCTTAGACGGTCCTCGGAACCGAAAGAGCCCACTTAC
CTGCTGGGCATAGACACATCAAAGACTGTACCAGCAGAAAAAGGAGGCTTGGTTGCCGTTCTGT
GTTCAAACGGGTCGATAAGAATATATGATAAAGAGACACTAAATCTGCTACGAGAATTCAGCGG
CTCTCCTGGGCTTCTTAACGGAGTCAGGTTTGCAAATTCCTGTGACAATGTCTACTCTGCAAGC
ACAGATGGCACTGTAAAGTGTTGGGACGCTCGGTTAGCTAGCGAAAAGCCCGCGCAGTTGTTCA
AGGGTTACCCTTCCAATATTTTTATCAGTTTTGATGTCAACTGCAAAGATCATATCATTTGTGC
TGGTGCAGAAAAGGTCGAGGACGATGCGTTGCTGGTATTTTGGGACGCAAGGTTCACTTCTCAG
GATTTGTCTACTCGAGACCCACTCGGAGCCTATTCAGAGACACACAGTGACGATATCACTCAGG
TGCGTTTCCATCCCAGCAATCCCAACATGGTTGTCTCGGGCTCAACTGATGGTCTGGTGAATGT
GTTTGACCTCAGTGTTGATAATGAAGAGGATGCACTGGTTGCCACCTGTAACTCCGTTTCATCA
GTGAGCTGTATAGGTTGGTGTGGAAGAGATTATAAACAAATTTACTGCATGACGCACGACGAAG
GGTTTTGTTGGTGGGATCTTAATCATCTGGATACAGATGAACCGATTACATGTTTGAACATCCA
GGATGTGAGAGACGTAACCGACGTGAAAGAAGGTCATTTGGACTATCTGATTGGTGGCCTGTAT
CATGAGAATATGGACAGACTGTTTGTTATTGGAGGGACCAACCTCGGAAAGATTCACTTGCTGA
GCTGCACCAAGACAGGACTGAGCCACGTGACCAGCCTTCAGGGCGGGCACGCAGCCACCGTGCG
TTCTTTCTGTTGGACCGTGTCTGAGGACTCTTTGCTGACCGGAGGAGAAGATGCACAGCTATTG
CTTTGGAAACCTGGGGCTGTGGAGAAGACTTTCACAAAGAAAGACAGCTTGAAAATTGCATCCT
CTGTGCAGCAGCGCGTTCGAGTCCACAGCAGCGATTCTTACAAGAAAAGGAAGCAGCAGTGATG
TCACGCTGGGAGTTTGAAAAGCTCTTCTGGTTTGAAATCATTTTTTTGCCACCTATAGCACATC
TTAAAGCTTATCTGTAAAAGCAGGCAGTTAGCAACCCCCCCGCCCGACAAATATCGAGAATGGT
TTAATTCAGGTTGAGACATATTCTACAATATTTTTAAAGCCTCCAGTTGAGTATAAAAATCAGT
GACTTGACAGGGAAATTACAAACCGCATTTTGAAACCCATCTGTTGAGTTAGTAAATGTTAGGT
TTGAAGAAATAGCTCTGAAGAGGAATCTTCAGTAGAAAGCTGGGGAGGCAAGGAGGTGGTTTGA
GTTATGGGCTTTAAACTCAGCTCCTTACATCTGAAATGGCTTACTTGTCTATCCAACACCGGCC
TGTGTAGTCATTTCAAGAGCGTTTGCCTCCCCCTATACTTACTGCATCATTGGGTCATTGAAAT
TGAAACATTCTAGTGAGCCTGAGCCTATATTTTTAGGAATGAAGTTTAATATTTTCCTAAAATG
AGAAAAATATATTTGGTAATGACTTGTATCTGTACTTTTTTAATCAATCAGGAGCATCTGTTCT
TTAATATACTATATTTACACTTGCTTAGCCAGCACCCAGGTGCTTTGCTGACAAAAAAAGAAAT
CACCTTTCTAGATTCATTTGGAGACGTAAAGTAAGATAGGCAAATGAAAATACAACAGAATATT
TTAAAAATATTATATAATTAAATCTTTTTATTTAATTAAAGTTTTTTCTTATTTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240233 ⟹ XP_006240295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,086,169 - 100,117,796 (-)	NCBI
mRatBN7.2	6	94,350,468 - 94,382,049 (-)	NCBI
Rnor_6.0	6	98,599,456 - 98,631,483 (-)	NCBI
Rnor_5.0	6	108,017,409 - 108,049,159 (-)	NCBI

Sequence:

show sequence

CGGAGTTCCAGCCGGCCGTGGGCAGAGTGTGCTTTTTCTCCATCTTCAGTGTGGGGTTTGCTGC
TGAGCTCACAGGTGCTCTCCACAGCCGGGCCGGAAGCTTTGCGATAACTGCCACAGGGCAACCT
TTCTCCAAAGTTTCCCGTGCTTATGTGTAAGAAGAGTAAACCCTGAGGTCAGACTCTGGAAGTT
TTGACGCAGTTCCTGATGAGTTTTATATCCGTGGATGCTTCTACTGACATGGAGAAGATTAAGG
ACCAGTTTGCTAATCTGCATATTCTTAGACGGTCCTCGGAACCGAAAGAGCCCACTTACCTGCT
GGGCATAGACACATCAAAGACTGTACCAGCAGAAAAAGGAGGCTTGGTTGCCGTTCTGTGTTCA
AACGGGTCGATAAGAATATATGATAAAGAGACACTAAATCTGCTACGAGAATTCAGCGGCTCTC
CTGGGCTTCTTAACGGAGTCAGGTTTGCAAATTCCTGTGACAATGTCTACTCTGCAAGCACAGA
TGGCACTGTAAAGTGTTGGGACGCTCGGTTAGCTAGCGAAAAGCCCGCGCAGTTGTTCAAGGGT
TACCCTTCCAATATTTTTATCAGTTTTGATGTCAACTGCAAAGATCATATCATTTGTGCTGGTG
CAGAAAAGGTCGAGGACGATGCGTTGCTGGTATTTTGGGACGCAAGGTTCACTTCTCAGGATTT
GTCTACTCGAGACCCACTCGGAGCCTATTCAGAGACACACAGTGACGATATCACTCAGGTGCGT
TTCCATCCCAGCAATCCCAACATGGTTGTCTCGGGCTCAACTGATGGTCTGGTGAATGTGTTTG
ACCTCAGTGTTGATAATGAAGAGGATGCACTGGTTGCCACCTGTAACTCCGTTTCATCAGTGAG
CTGTATAGGTTGGTGTGGAAGAGATTATAAACAAATTTACTGCATGACGCACGACGAAGGGTTT
TGTTGGTGGGATCTTAATCATCTGGATACAGATGAACCGATTACATGTTTGAACATCCAGGATG
TGAGAGACGTAACCGACGTGAAAGAAGGTCATTTGGACTATCTGATTGGTGGCCTGTATCATGA
GAATATGGACAGACTGTTTGTTATTGGAGGGACCAACCTCGGAAAGATTCACTTGCTGAGCTGC
ACCAAGACAGGACTGAGCCACGTGACCAGCCTTCAGGGCGGGCACGCAGCCACCGTGCGTTCTT
TCTGTTGGACCGTGTCTGAGGACTCTTTGCTGACCGGAGGAGAAGATGCACAGCTATTGCTTTG
GAAACCTGGGGCTGTGGAGAAGACTTTCACAAAGAAAGACAGCTTGAAAATTGCATCCTCTGTG
CAGCAGCGCGTTCGAGTCCACAGCAGCGATTCTTACAAGAAAAGGAAGCAGCAGTGATGTCACG
CTGGGAGTTTGAAAAGCTCTTCTGGTTTGAAATCATTTTTTTGCCACCTATAGCACATCTTAAA
GCTTATCTGTAAAAGCAGGCAGTTAGCAACCCCCCCGCCCGACAAATATCGAGAATGGTTTAAT
TCAGGTTGAGACATATTCTACAATATTTTTAAAGCCTCCAGTTGAGTATAAAAATCAGTGACTT
GACAGGGAAATTACAAACCGCATTTTGAAACCCATCTGTTGAGTTAGTAAATGTTAGGTTTGAA
GAAATAGCTCTGAAGAGGAATCTTCAGTAGAAAGCTGGGGAGGCAAGGAGGTGGTTTGAGTTAT
GGGCTTTAAACTCAGCTCCTTACATCTGAAATGGCTTACTTGTCTATCCAACACCGGCCTGTGT
AGTCATTTCAAGAGCGTTTGCCTCCCCCTATACTTACTGCATCATTGGGTCATTGAAATTGAAA
CATTCTAGTGAGCCTGAGCCTATATTTTTAGGAATGAAGTTTAATATTTTCCTAAAATGAGAAA
AATATATTTGGTAATGACTTGTATCTGTACTTTTTTAATCAATCAGGAGCATCTGTTCTTTAAT
ATACTATATTTACACTTGCTTAGCCAGCACCCAGGTGCTTTGCTGACAAAAAAAGAAATCACCT
TTCTAGATTCATTTGGAGACGTAAAGTAAGATAGGCAAATGAAAATACAACAGAATATTTTAAA
AATATTATATAATTAAATCTTTTTATTTAATTAAAGTTTTTTCTTATTTTAAACTTGAAGCCTT
GTTTACTGTCTGTGGGGTGTATGTGTGTGCGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTTTGTTTTCTCTTTTTCCCTTGTGGGCCCCAGGGATCATAGTCCTTAGACT
TCACAGCAGCCTCTACCTACCTGGCTACCATGGGGCAGGGTAGCATTTACTGTTAATTTTGTCA
TTTTCCTTTTAAAAAAAAATCTTTTGTAAAGTGCCTTAATAAAAGAAGATAATACTTTTAA

hide sequence

RefSeq Acc Id:

XM_006240235 ⟹ XP_006240297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	100,086,169 - 100,117,758 (-)	NCBI
mRatBN7.2	6	94,350,468 - 94,382,085 (-)	NCBI
Rnor_6.0	6	98,599,456 - 98,631,512 (-)	NCBI
Rnor_5.0	6	108,017,409 - 108,049,159 (-)	NCBI

Sequence:

show sequence

TATAATTTTACCCAATCAGAGCCGGAGGGCGGAGTTCCAGCCGGCCGTGGGCAGAGTGTGCTTT
TTCTCCATCTTCAGTGTGGGGTTTGCTGCTGAGAGTTTTATATCCGTGGATGCTTCTACTGACA
TGGAGAAGATTAAGGACCAGTTTGCTAATCTGCATATTCTTAGACGGTCCTCGGAACCGAAAGA
GCCCACTTACCTGCTGGGCATAGACACATCAAAGACTGTACCAGCAGAAAAAGGAGGCTTGGTT
GCCGTTCTGTGTTCAAACGGGTCGATAAGAATATATGATAAAGAGACACTAAATCTGCTACGAG
AATTCAGCGGCTCTCCTGGGCTTCTTAACGGAGTCAGGTTTGCAAATTCCTGTGACAATGTCTA
CTCTGCAAGCACAGATGGCACTGTAAAGTGTTGGGACGCTCGGTTAGCTAGCGAAAAGCCCGCG
CAGTTGTTCAAGGGTTACCCTTCCAATATTTTTATCAGTTTTGATGTCAACTGCAAAGATCATA
TCATTTGTGCTGGTGCAGAAAAGGTCGAGGACGATGCGTTGCTGGTATTTTGGGACGCAAGGTT
CACTTCTCAGGATTTGTCTACTCGAGACCCACTCGGAGCCTATTCAGAGACACACAGTGACGAT
ATCACTCAGGTGCGTTTCCATCCCAGCAATCCCAACATGGTTGTCTCGGGCTCAACTGATGGTC
TGGTGAATGTGTTTGACCTCAGTGTTGATAATGAAGAGGATGCACTGGTTGCCACCTGTAACTC
CGTTTCATCAGTGAGCTGTATAGGTTGGTGTGGAAGAGATTATAAACAAATTTACTGCATGACG
CACGACGAAGGGTTTTGTTGGTGGGATCTTAATCATCTGGATACAGATGAACCGATTACATGTT
TGAACATCCAGGATGTGAGAGACGTAACCGACGTGAAAGAAGGTCATTTGGACTATCTGATTGG
TGGCCTGTATCATGAGAATATGGACAGACTGTTTGTTATTGGAGGGACCAACCTCGGAAAGATT
CACTTGCTGAGCTGCACCAAGACAGGACTGAGCCACGTGACCAGCCTTCAGGGCGGGCACGCAG
CCACCGTGCGTTCTTTCTGTTGGACCGTGTCTGAGGACTCTTTGCTGACCGGAGGAGAAGATGC
ACAGCTATTGCTTTGGAAACCTGGGGCTGTGGAGAAGACTTTCACAAAGAAAGACAGCTTGAAA
ATTGCATCCTCTGTGCAGCAGCGCGTTCGAGTCCACAGCAGCGATTCTTACAAGAAAAGGAAGC
AGCAGTGATGTCACGCTGGGAGTTTGAAAAGCTCTTCTGGTTTGAAATCATTTTTTTGCCACCT
ATAGCACATCTTAAAGCTTATCTGTAAAAGCAGGCAGTTAGCAACCCCCCCGCCCGACAAATAT
CGAGAATGGTTTAATTCAGGTTGAGACATATTCTACAATATTTTTAAAGCCTCCAGTTGAGTAT
AAAAATCAGTGACTTGACAGGGAAATTACAAACCGCATTTTGAAACCCATCTGTTGAGTTAGTA
AATGTTAGGTTTGAAGAAATAGCTCTGAAGAGGAATCTTCAGTAGAAAGCTGGGGAGGCAAGGA
GGTGGTTTGAGTTATGGGCTTTAAACTCAGCTCCTTACATCTGAAATGGCTTACTTGTCTATCC
AACACCGGCCTGTGTAGTCATTTCAAGAGCGTTTGCCTCCCCCTATACTTACTGCATCATTGGG
TCATTGAAATTGAAACATTCTAGTGAGCCTGAGCCTATATTTTTAGGAATGAAGTTTAATATTT
TCCTAAAATGAGAAAAATATATTTGGTAATGACTTGTATCTGTACTTTTTTAATCAATCAGGAG
CATCTGTTCTTTAATATACTATATTTACACTTGCTTAGCCAGCACCCAGGTGCTTTGCTGACAA
AAAAAGAAATCACCTTTCTAGATTCATTTGGAGACGTAAAGTAAGATAGGCAAATGAAAATACA
ACAGAATATTTTAAAAATATTATATAATTAAATCTTTTTATTTAATTAAAGTTTTTTCTTATTT
TAAACTTGAAGCCTTGTTTACTGTCTGTGGGGTGTATGTGTGTGCGTGCGTGCGTGCGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTTTTCTCTTTTTCCCTTGTGGGCCCCAGGGAT
CATAGTCCTTAGACTTCACAGCAGCCTCTACCTACCTGGCTACCATGGGGCAGGGTAGCATTTA
CTGTTAATTTTGTCATTTTCCTTTTAAAAAAAAATCTTTTGTAAAGTGCCTTAATAAAAGAAGA
TAATACTTTTAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001014100	(Get FASTA)	NCBI Sequence Viewer
	XP_006240295	(Get FASTA)	NCBI Sequence Viewer
	XP_006240297	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89849	(Get FASTA)	NCBI Sequence Viewer
	EDM03635	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000006860.4
	ENSRNOP00000095204.1
GenBank Protein	Q5FVP5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001014100 ⟸ NM_001014078

- UniProtKB:

Q5FVP5 (UniProtKB/Swiss-Prot), A6HC80 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEKIKDQFANLHILRRSSEPKEPTYLLGIDTSKTVPAEKGGLVAVLCSNGSIRIYDKETLNLLR
EFSGSPGLLNGVRFANSCDNVYSASTDGTVKCWDARLASEKPAQLFKGYPSNIFISFDVNCKDH
IICAGAEKVEDDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDG
LVNVFDLSVDNEEDALVATCNSVSSVSCIGWCGRDYKQIYCMTHDEGFCWWDLNHLDTDEPITC
LNIQDVRDVTDVKEGHLDYLIGGLYHENMDRLFVIGGTNLGKIHLLSCTKTGLSHVTSLQGGHA
ATVRSFCWTVSEDSLLTGGEDAQLLLWKPGAVEKTFTKKDSLKIASSVQQRVRVHSSDSYKKRK
QQ

hide sequence

RefSeq Acc Id:	XP_006240297 ⟸ XM_006240235
- Peptide Label:	isoform X1
- UniProtKB:	Q5FVP5 (UniProtKB/Swiss-Prot), A6HC80 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKIKDQFANLHILRRSSEPKEPTYLLGIDTSKTVPAEKGGLVAVLCSNGSIRIYDKETLNLLR EFSGSPGLLNGVRFANSCDNVYSASTDGTVKCWDARLASEKPAQLFKGYPSNIFISFDVNCKDH IICAGAEKVEDDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSNPNMVVSGSTDG LVNVFDLSVDNEEDALVATCNSVSSVSCIGWCGRDYKQIYCMTHDEGFCWWDLNHLDTDEPITC LNIQDVRDVTDVKEGHLDYLIGGLYHENMDRLFVIGGTNLGKIHLLSCTKTGLSHVTSLQGGHA ATVRSFCWTVSEDSLLTGGEDAQLLLWKPGAVEKTFTKKDSLKIASSVQQRVRVHSSDSYKKRK QQ hide sequence

RefSeq Acc Id:	XP_006240295 ⟸ XM_006240233
- Peptide Label:	isoform X2
- UniProtKB:	A0A8L2Q2X8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFISVDASTDMEKIKDQFANLHILRRSSEPKEPTYLLGIDTSKTVPAEKGGLVAVLCSNGSIR IYDKETLNLLREFSGSPGLLNGVRFANSCDNVYSASTDGTVKCWDARLASEKPAQLFKGYPSNI FISFDVNCKDHIICAGAEKVEDDALLVFWDARFTSQDLSTRDPLGAYSETHSDDITQVRFHPSN PNMVVSGSTDGLVNVFDLSVDNEEDALVATCNSVSSVSCIGWCGRDYKQIYCMTHDEGFCWWDL NHLDTDEPITCLNIQDVRDVTDVKEGHLDYLIGGLYHENMDRLFVIGGTNLGKIHLLSCTKTGL SHVTSLQGGHAATVRSFCWTVSEDSLLTGGEDAQLLLWKPGAVEKTFTKKDSLKIASSVQQRVR VHSSDSYKKRKQQ hide sequence

Ensembl Acc Id:

ENSRNOP00000006860 ⟸ ENSRNOT00000006860

Ensembl Acc Id:

ENSRNOP00000095204 ⟸ ENSRNOT00000103901

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5FVP5-F1-model_v2	AlphaFold	Q5FVP5	1-386	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307393	AgrOrtholog
BioCyc Gene	G2FUF-37078	BioCyc
Ensembl Genes	ENSRNOG00000021628	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006860.5	UniProtKB/TrEMBL
	ENSRNOT00000103901.1	UniProtKB/Swiss-Prot
Gene3D-CATH	2.130.10.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7375058	IMAGE-MGC_LOAD
InterPro	WD40/YVTN_repeat-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WDR89	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:314243	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:108878	IMAGE-MGC_LOAD
NCBI Gene	314243	ENTREZGENE
PANTHER	PTHR22889	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD REPEAT-CONTAINING PROTEIN 89	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Wdr89	PhenoGen
PROSITE	WD_REPEATS_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000021628	RatGTEx
SMART	WD40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2Q2X8	ENTREZGENE, UniProtKB/TrEMBL
	A6HC80	ENTREZGENE, UniProtKB/TrEMBL
	Q5FVP5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Wdr89	WD repeat domain 89	RGD1307393	similar to hypothetical protein MGC9907	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1307393	similar to hypothetical protein MGC9907	RGD1307393_predicted	similar to hypothetical protein MGC9907 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1307393_predicted	similar to hypothetical protein MGC9907 (predicted)	LOC314243_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC314243_predicted	similar to hypothetical protein MGC9907 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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