Ebag9 (estrogen receptor binding site associated antigen 9) - Rat Genome Database

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Gene: Ebag9 (estrogen receptor binding site associated antigen 9) Rattus norvegicus
Analyze
Symbol: Ebag9
Name: estrogen receptor binding site associated antigen 9
RGD ID: 1307293
Description: Predicted to be involved in apoptotic process. Predicted to act upstream of or within T cell mediated cytotoxicity and adaptive immune memory response involving T cells and B cells. Located in secretory granule. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human EBAG9 (estrogen receptor binding site associated antigen 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; atrazine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: estrogen receptor binding site associated, antigen, 9; estrogen receptor-binding fragment-associated gene 9; LOC299864; MGC94627; receptor-binding cancer antigen expressed on SiSo cells
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,695,213 - 77,713,565 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl777,695,072 - 77,713,557 (+)EnsemblGRCr8
mRatBN7.2775,810,950 - 75,828,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,810,594 - 75,861,248 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx777,656,618 - 77,674,577 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,859,112 - 79,877,071 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,730,488 - 79,748,431 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,564,563 - 83,582,516 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,564,563 - 83,582,508 (+)Ensemblrn6Rnor6.0
Rnor_5.0783,579,394 - 83,597,347 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4780,515,272 - 80,533,346 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera772,780,743 - 72,798,677 (+)NCBICelera
RGSC_v3.1780,536,001 - 80,554,073 (+)NCBI
Cytogenetic Map7q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
protein binding  (IPI,ISO)

References

References - curated
# Reference Title Reference Citation
1. Expression of EBAG9/RCAS1 is associated with advanced disease in human epithelial ovarian cancer. Akahira JI, etal., Br J Cancer. 2004 Jun 1;90(11):2197-202.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Estrogen receptor-binding fragment-associated antigen 9 is a tumor-promoting and prognostic factor for renal cell carcinoma. Ogushi T, etal., Cancer Res. 2005 May 1;65(9):3700-6.
6. The metallothionein and RCAS1 expression analysis in breast cancer and adjacent tissue regarding the immune cells presence and their activity. Popiela TJ, etal., Neuro Endocrinol Lett. 2006 Dec;27(6):786-94.
7. GOA pipeline RGD automated data pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
10. RCAS1 is associated with ductal breast cancer progression. Rousseau J, etal., Biochem Biophys Res Commun. 2002 May 24;293(5):1544-9.
11. EBAG9 adds a new layer of control on large dense-core vesicle exocytosis via interaction with Snapin. Ruder C, etal., Mol Biol Cell. 2005 Mar;16(3):1245-57. Epub 2005 Jan 5.
12. Invasive potency related to RCAS1 expression in uterine cervical cancer. Sonoda K, etal., Gynecol Oncol. 2005 Oct;99(1):189-98.
13. Clinical significance of RCAS1 as a biomarker of uterine cancer. Sonoda K, etal., Gynecol Oncol. 2006 Dec;103(3):924-31. Epub 2006 Jul 13.
14. EBAG9/RCAS1 in human breast carcinoma: a possible factor in endocrine-immune interactions. Suzuki T, etal., Br J Cancer. 2001 Nov 30;85(11):1731-7.
15. EBAG9/RCAS1 expression and its prognostic significance in prostatic cancer. Takahashi S, etal., Int J Cancer. 2003 Sep 1;106(3):310-5.
16. A highly polymorphic CA repeat marker at the EBAG9/RCAS1 locus on 8q23 that detected frequent multiplication in breast cancer. Tsuneizumi M, etal., Ann Hum Biol. 2002 Jul-Aug;29(4):457-60.
17. RCAS1 decidual immunoreactivity in severe pre-eclampsia: immune cell presence and activity. Wicherek L, etal., Am J Reprod Immunol. 2007 Oct;58(4):358-66.
18. Metallothionein and RCAS1 expression in comparison to immunological cells activity in endometriosis, endometrial adenocarcinoma and endometrium according to menstrual cycle changes. Wicherek L, etal., Gynecol Oncol. 2005 Dec;99(3):622-30. Epub 2005 Aug 19.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16396499  


Genomics

Comparative Map Data
Ebag9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8777,695,213 - 77,713,565 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl777,695,072 - 77,713,557 (+)EnsemblGRCr8
mRatBN7.2775,810,950 - 75,828,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl775,810,594 - 75,861,248 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx777,656,618 - 77,674,577 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0779,859,112 - 79,877,071 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0779,730,488 - 79,748,431 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0783,564,563 - 83,582,516 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl783,564,563 - 83,582,508 (+)Ensemblrn6Rnor6.0
Rnor_5.0783,579,394 - 83,597,347 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4780,515,272 - 80,533,346 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera772,780,743 - 72,798,677 (+)NCBICelera
RGSC_v3.1780,536,001 - 80,554,073 (+)NCBI
Cytogenetic Map7q31NCBI
EBAG9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388109,539,702 - 109,565,996 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8109,539,711 - 109,570,072 (+)Ensemblhg38GRCh38
GRCh378110,551,931 - 110,578,225 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368110,621,105 - 110,646,568 (+)NCBIBuild 36Build 36hg18NCBI36
Build 348110,621,104 - 110,646,565NCBI
Celera8106,739,328 - 106,764,788 (+)NCBICelera
Cytogenetic Map8q23.2NCBI
HuRef8105,873,913 - 105,900,207 (+)NCBIHuRef
CHM1_18110,592,186 - 110,618,469 (+)NCBICHM1_1
T2T-CHM13v2.08110,668,289 - 110,694,581 (+)NCBIT2T-CHM13v2.0
Ebag9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391544,482,574 - 44,504,916 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1544,482,571 - 44,504,911 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381544,619,227 - 44,641,538 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1544,619,175 - 44,641,515 (+)Ensemblmm10GRCm38
MGSCv371544,451,187 - 44,472,573 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361544,449,679 - 44,470,986 (+)NCBIMGSCv36mm8
Celera1545,075,364 - 45,096,726 (+)NCBICelera
Cytogenetic Map15B3.2NCBI
cM Map1516.91NCBI
Ebag9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541716,936,622 - 16,958,876 (+)Ensembl
ChiLan1.0NW_00495541716,941,035 - 16,958,876 (+)NCBIChiLan1.0ChiLan1.0
EBAG9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27126,914,613 - 126,941,422 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18102,437,180 - 102,462,408 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08106,190,208 - 106,216,402 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18108,335,233 - 108,361,475 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8108,335,590 - 108,361,475 (+)EnsemblpanPan2panpan1.1
EBAG9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11310,081,700 - 10,099,737 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1310,081,695 - 10,099,501 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1310,077,585 - 10,090,151 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01310,363,392 - 10,381,433 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1310,326,011 - 10,382,840 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11310,110,045 - 10,122,607 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01310,227,089 - 10,239,836 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01310,316,781 - 10,329,348 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ebag9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530328,023,492 - 28,047,531 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647035,450,292 - 35,473,110 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647035,449,920 - 35,473,635 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EBAG9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl427,986,866 - 28,013,945 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1427,986,270 - 28,013,970 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2430,227,837 - 30,255,620 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EBAG9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18104,240,197 - 104,266,768 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8104,251,418 - 104,264,703 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603936,308,335 - 36,335,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ebag9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247638,621,638 - 8,650,016 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247638,621,666 - 8,649,109 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ebag9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11219,131,953 - 219,150,239 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ebag9
218 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:476
Count of miRNA genes:240
Interacting mature miRNAs:294
Transcripts:ENSRNOT00000005705
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)771103011106126789Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH137875  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2775,828,233 - 75,828,360 (+)MAPPERmRatBN7.2
Rnor_6.0783,581,848 - 83,581,974NCBIRnor6.0
Rnor_5.0783,596,679 - 83,596,805UniSTSRnor5.0
RGSC_v3.4780,532,683 - 80,532,809UniSTSRGSC3.4
Celera772,798,014 - 72,798,140UniSTS
RH 3.4 Map7525.5UniSTS
Cytogenetic Map7q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000005705   ⟹   ENSRNOP00000005705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,699,404 - 77,713,557 (+)Ensembl
mRatBN7.2 Ensembl775,810,594 - 75,861,248 (+)Ensembl
Rnor_6.0 Ensembl783,564,563 - 83,582,508 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105068   ⟹   ENSRNOP00000093345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,695,072 - 77,713,557 (+)Ensembl
mRatBN7.2 Ensembl775,814,259 - 75,861,248 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105146   ⟹   ENSRNOP00000079314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl777,695,830 - 77,713,557 (+)Ensembl
mRatBN7.2 Ensembl775,811,361 - 75,861,248 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116866   ⟹   ENSRNOP00000084483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl775,815,398 - 75,861,248 (+)Ensembl
RefSeq Acc Id: NM_001009665   ⟹   NP_001009665
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,695,613 - 77,713,560 (+)NCBI
mRatBN7.2775,810,950 - 75,828,897 (+)NCBI
Rnor_6.0783,564,563 - 83,582,511 (+)NCBI
Rnor_5.0783,579,394 - 83,597,347 (+)NCBI
RGSC_v3.4780,515,272 - 80,533,346 (+)RGD
Celera772,780,743 - 72,798,677 (+)RGD
Sequence:
RefSeq Acc Id: XM_063263241   ⟹   XP_063119311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,695,213 - 77,713,565 (+)NCBI
RefSeq Acc Id: XM_063263242   ⟹   XP_063119312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8777,695,818 - 77,713,565 (+)NCBI
RefSeq Acc Id: NP_001009665   ⟸   NM_001009665
- UniProtKB: Q5PQP2 (UniProtKB/Swiss-Prot),   A6HRB8 (UniProtKB/TrEMBL),   A0A8I6AKF8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000005705   ⟸   ENSRNOT00000005705
Ensembl Acc Id: ENSRNOP00000093345   ⟸   ENSRNOT00000105068
Ensembl Acc Id: ENSRNOP00000084483   ⟸   ENSRNOT00000116866
Ensembl Acc Id: ENSRNOP00000079314   ⟸   ENSRNOT00000105146
RefSeq Acc Id: XP_063119311   ⟸   XM_063263241
- Peptide Label: isoform X1
- UniProtKB: A0A8L2Q2E3 (UniProtKB/TrEMBL),   A0A8I6AKF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063119312   ⟸   XM_063263242
- Peptide Label: isoform X2
- UniProtKB: Q5PQP2 (UniProtKB/Swiss-Prot),   A6HRB8 (UniProtKB/TrEMBL),   A0A8I6AKF8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQP2-F1-model_v2 AlphaFold Q5PQP2 1-213 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695320
Promoter ID:EPDNEW_R5845
Type:multiple initiation site
Name:Ebag9_1
Description:estrogen receptor binding site associated, antigen, 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0783,564,566 - 83,564,626EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307293 AgrOrtholog
BioCyc Gene G2FUF-33478 BioCyc
Ensembl Genes ENSRNOG00000004220 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000105068 ENTREZGENE
  ENSRNOT00000105146 ENTREZGENE
  ENSRNOT00000105146.1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7191226 IMAGE-MGC_LOAD
InterPro Cancer-assoc_antigen_RCAS1 UniProtKB/Swiss-Prot
KEGG Report rno:299864 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94627 IMAGE-MGC_LOAD
NCBI Gene 299864 ENTREZGENE
PANTHER PTHR15208 UniProtKB/Swiss-Prot
  RECEPTOR-BINDING CANCER ANTIGEN EXPRESSED ON SISO CELLS UniProtKB/Swiss-Prot
PhenoGen Ebag9 PhenoGen
PIRSF RCAS1 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000004220 RatGTEx
UniProt A0A8I6AKF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q2E3 ENTREZGENE, UniProtKB/TrEMBL
  A6HRB8 ENTREZGENE, UniProtKB/TrEMBL
  Q5PQP2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-05-26 Ebag9  estrogen receptor binding site associated antigen 9  Ebag9  estrogen receptor binding site associated, antigen, 9  Name changed 629549 APPROVED
2008-11-11 Ebag9  estrogen receptor binding site associated, antigen, 9  Ebag9  estrogen receptor-binding fragment-associated gene 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ebag9  estrogen receptor-binding fragment-associated gene 9  Ebag9_predicted  estrogen receptor-binding fragment-associated gene 9 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ebag9_predicted  estrogen receptor-binding fragment-associated gene 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED