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Gene: Slc41a2 (solute carrier family 41 member 2) Rattus norvegicus

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Symbol:

Slc41a2

Name:

solute carrier family 41 member 2

RGD ID:

1307292

Description:

Predicted to enable inorganic cation transmembrane transporter activity. Predicted to be involved in metal ion transport. Predicted to act upstream of or within metal ion transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC41A2 (solute carrier family 41 member 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362861; solute carrier family 41 (magnesium transporter), member 2; solute carrier family 41, member 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC41A2 (solute carrier family 41 member 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Slc41a2 (solute carrier family 41, member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc41a2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC41A2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC41A2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc41a2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC41A2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC41A2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc41a2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc41a2 (solute carrier family 41 member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC41A2 (solute carrier family 41 member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc41a2 (solute carrier family 41, member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc41a2b (solute carrier family 41 member 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc41a2b (solute carrier family 41 member 2b)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc41a2a (solute carrier family 41 member 2a)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	K07H8.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33181	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33181	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZK185.2	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc41a2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc41a2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc41a3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	22,271,298 - 22,378,764 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	22,271,313 - 22,378,764 (+)	Ensembl				GRCr8
mRatBN7.2	7	20,383,714 - 20,491,178 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	20,383,757 - 20,491,166 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	22,348,186 - 22,455,769 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	24,510,946 - 24,618,527 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	24,287,953 - 24,395,538 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	26,522,314 - 26,607,861 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	26,522,314 - 26,607,861 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	26,651,682 - 26,734,269 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	22,583,232 - 22,669,674 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	17,567,910 - 17,673,805 (+)	NCBI		Celera
RGSC_v3.1	7	22,600,108 - 22,687,614 (+)	NCBI
Cytogenetic Map	7	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buspirone (EXP)

Butylbenzyl phthalate (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

carbon nanotube (ISO)

carbonyl cyanide p-trifluoromethoxyphenylhydrazone (EXP)

cefaloridine (EXP)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cyclosporin A (ISO)

dibutyl phthalate (EXP)

diclofenac (ISO)

dimethyl sulfoxide (ISO)

dimethylarsinous acid (ISO)

dioxygen (ISO)

dopamine (EXP)

doxorubicin (ISO)

entinostat (ISO)

epoxiconazole (ISO)

fenoldopam (EXP)

fenthion (ISO)

flutamide (EXP)

furan (EXP,ISO)

gentamycin (EXP)

glafenine (EXP)

inulin (ISO)

lead(0) (ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (EXP)

N-methyl-4-phenylpyridinium (EXP)

nickel atom (ISO)

oxycodone (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

parathion (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenobarbital (ISO)

phenylarsine oxide (ISO)

pirinixic acid (EXP,ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

quercetin (ISO)

resveratrol (ISO)

ritodrine (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

trovafloxacin (EXP)

urethane (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cobalt ion transport (ISO)

iron ion transport (ISO)

magnesium ion transport (IEA,ISO)

manganese ion transport (ISO)

metal ion transport (IEA,ISO)

monoatomic cation transmembrane transport (IEA)

monoatomic cation transport (IEA)

monoatomic ion transport (IEA)

nickel cation transport (ISO)

transmembrane transport (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

Molecular Function

monoatomic cation transmembrane transporter activity (IEA)

protein binding (ISO)

transmembrane transporter activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15809054

Genomics

Comparative Map Data

Slc41a2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	22,271,298 - 22,378,764 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	22,271,313 - 22,378,764 (+)	Ensembl				GRCr8
mRatBN7.2	7	20,383,714 - 20,491,178 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	20,383,757 - 20,491,166 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	22,348,186 - 22,455,769 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	24,510,946 - 24,618,527 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	24,287,953 - 24,395,538 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	26,522,314 - 26,607,861 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	26,522,314 - 26,607,861 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	26,651,682 - 26,734,269 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	22,583,232 - 22,669,674 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	17,567,910 - 17,673,805 (+)	NCBI		Celera
RGSC_v3.1	7	22,600,108 - 22,687,614 (+)	NCBI
Cytogenetic Map	7	q13	NCBI

SLC41A2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	104,801,801 - 104,958,746 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	104,801,801 - 104,958,759 (-)	Ensembl			hg38	GRCh38
GRCh37	12	105,195,579 - 105,352,524 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	103,722,491 - 103,846,562 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	103,700,830 - 103,824,900	NCBI
Celera	12	104,861,914 - 104,987,145 (-)	NCBI		Celera
Cytogenetic Map	12	q23.3	NCBI
HuRef	12	102,256,271 - 102,381,704 (-)	NCBI		HuRef
CHM1_1	12	105,163,071 - 105,288,259 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	104,763,412 - 104,920,359 (-)	NCBI		T2T-CHM13v2.0

Slc41a2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	83,066,712 - 83,174,657 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	83,066,712 - 83,173,746 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	83,230,848 - 83,338,037 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	83,230,848 - 83,337,882 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	82,693,884 - 82,800,562 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	82,660,938 - 82,767,616 (-)	NCBI		MGSCv36	mm8
Celera	10	85,219,356 - 85,326,265 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	41.03	NCBI

Slc41a2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955405	39,178,611 - 39,280,839 (-)	Ensembl
ChiLan1.0	NW_004955405	39,181,396 - 39,280,789 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC41A2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	112,867,604 - 113,024,405 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	112,864,244 - 113,020,784 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	102,379,820 - 102,536,622 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	105,775,458 - 105,918,039 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	105,778,076 - 105,918,041 (-)	Ensembl			panPan2	panpan1.1

SLC41A2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	33,404,968 - 33,519,146 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	33,410,561 - 33,515,655 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	33,318,238 - 33,437,432 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	34,240,808 - 34,360,505 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	34,240,757 - 34,357,705 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	33,975,963 - 34,095,691 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	34,259,839 - 34,379,294 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	34,453,302 - 34,572,802 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc41a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	16,711,334 - 16,837,311 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936492	9,721,134 - 9,847,726 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936492	9,721,564 - 9,845,004 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC41A2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	79,593,915 - 79,720,895 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	79,593,913 - 79,721,599 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	82,991,320 - 83,121,500 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC41A2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	100,031,092 - 100,137,481 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	100,068,637 - 100,163,592 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	144,850,129 - 144,990,633 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc41a2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624750	4,103,622 - 4,193,574 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624750	4,103,372 - 4,195,147 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc41a2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	165,100,970 - 165,205,746 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slc41a2
676 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	257
Count of miRNA genes:	185
Interacting mature miRNAs:	210
Transcripts:	ENSRNOT00000011572
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354644	Spl4	Serum phospholipid level QTL 4	4.9		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	7	21541977	51639954	Rat
1300176	Hrtrt10	Heart rate QTL 10	3.19		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	1	23748937	Rat
9590102	Sffal5	Serum free fatty acids level QTL 5	8.62	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	7	7216097	52216097	Rat
1578652	Bmd15	Bone mineral density QTL 15	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	7	10517086	62346019	Rat
631503	Bp102	Blood pressure QTL 102	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	7	1709527	46709527	Rat
2298547	Neuinf5	Neuroinflammation QTL 5	3.7		nervous system integrity trait (VT:0010566)	spinal cord Cd74 protein level (CMO:0002131)	7	10112916	60150541	Rat
10059592	Kidm45	Kidney mass QTL 45	3.95	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	7	9460877	54460877	Rat
2298550	Neuinf6	Neuroinflammation QTL 6	3.3		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	7	1	29716167	Rat
1354637	Scl30	Serum cholesterol level QTL 30	3.7		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	7	21541977	51639954	Rat
724560	Plsm3	Polydactyly-luxate syndrome (PLS) morphotypes QTL 3		0.0003	tibia length (VT:0004357)	tibia length (CMO:0000450)	7	1	34650782	Rat
1354639	Spl5	Serum phospholipid level QTL 5	3.9		blood LDL phospholipid amount (VT:0010505)	blood low density lipoprotein phospholipid level (CMO:0001568)	7	21541977	35707405	Rat
7411566	Bw136	Body weight QTL 136	10.4	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	7	1	32612984	Rat
61410	Bw19	Body weight QTL 19	6.2	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	7	1669658	46669658	Rat
1643004	Pain2	Pain QTL 2	1		mechanical nociception trait (VT:0002734)	self mutilation severity score (CMO:0002145)	7	10112916	99900612	Rat
2290372	Gluco33	Glucose level QTL 33	2.71		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	1	31777942	Rat
1300149	Cm6	Cardiac mass QTL 6	4.09		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	7	1	104117804	Rat
634336	Anxrr17	Anxiety related response QTL 17	3.66		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	7	1509236	116977875	Rat
9590142	Scort5	Serum corticosterone level QTL 5	24.4	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	7	1	32612984	Rat
1582260	Bw72	Body weight QTL 72	3.2	0.0043	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582261	Bw69	Body weight QTL 69	3.2	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1582262	Bw75	Body weight QTL 75	3	0.0038	body mass (VT:0001259)	body weight (CMO:0000012)	7	1	39960528	Rat
1300132	Bp182	Blood pressure QTL 182	3.49		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	21541977	86817926	Rat
1300138	Hrtrt9	Heart rate QTL 9	4.72		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	7	10498820	55498820	Rat
61369	Mcs2	Mammary carcinoma susceptibility QTL 2	3.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	7	20920494	37412865	Rat
738033	Anxrr6	Anxiety related response QTL 6	4.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	7	17460447	62460447	Rat
70207	Niddm31	Non-insulin dependent diabetes mellitus QTL 31	3.9		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	7	20057232	65057232	Rat

Markers in Region

RH139734

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	20,490,826 - 20,491,035 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	26,607,796 - 26,608,004	NCBI	Rnor6.0
Rnor_5.0	7	26,734,204 - 26,734,412	UniSTS	Rnor5.0
RGSC_v3.4	7	22,669,609 - 22,669,817	UniSTS	RGSC3.4
Celera	7	17,673,740 - 17,673,948	UniSTS
RH 3.4 Map	7	115.9	UniSTS
Cytogenetic Map	7	q13	UniSTS

AI013202

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	22,375,702 - 22,375,898 (+)	Marker Load Pipeline
mRatBN7.2	7	20,488,116 - 20,488,312 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	26,605,086 - 26,605,281	NCBI	Rnor6.0
Rnor_5.0	7	26,731,494 - 26,731,689	UniSTS	Rnor5.0
RGSC_v3.4	7	22,666,899 - 22,667,094	UniSTS	RGSC3.4
Celera	7	17,671,030 - 17,671,225	UniSTS
RH 3.4 Map	7	117.05	UniSTS
Cytogenetic Map	7	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	86	59	6	349	186	11	141	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063263758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ480747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011572 ⟹ ENSRNOP00000011572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	22,271,313 - 22,378,764 (+)	Ensembl
mRatBN7.2 Ensembl	7	20,383,757 - 20,491,166 (+)	Ensembl
Rnor_6.0 Ensembl	7	26,522,314 - 26,607,861 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130064 ⟹ ENSRNOP00000102475

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	22,280,813 - 22,371,657 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138998 ⟹ ENSRNOP00000099487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	22,283,241 - 22,378,762 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167280 ⟹ ENSRNOP00000108613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	22,280,813 - 22,376,724 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000169359 ⟹ ENSRNOP00000107703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	22,280,813 - 22,367,225 (+)	Ensembl

RefSeq Acc Id:

NM_001108742 ⟹ NP_001102212

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,271,313 - 22,378,764 (+)	NCBI
mRatBN7.2	7	20,383,714 - 20,491,178 (+)	NCBI
Rnor_6.0	7	26,522,314 - 26,607,861 (+)	NCBI
Rnor_5.0	7	26,651,682 - 26,734,269 (+)	NCBI
RGSC_v3.4	7	22,583,232 - 22,669,674 (+)	RGD
Celera	7	17,567,910 - 17,673,805 (+)	RGD

Sequence:

show sequence

GGGCGTGACGCGCTGCCCGCACGTCTCCTCCCCGTCCTTTGGCCTCCCAGAAGCGCTCAACGAA
CGACTCCCACGTCCTCGGTTTCATTCCGGTCCGCAAGGAACGCGAGTTGGACCCCCGCCGAGGC
CCGGGGCTGACGGAGCGATTGAATTCCTCTCTTAAATTTCTGGATGTGTTTTCACTCGTGGAAA
CGTTTTCTACAGAGCAGTCAATGGCTTAATTCGAGCAAGTGTTGGCTGTGACTTGCTTTCGCTG
TTCTTCAGGAAGCTCGAGTCTGCCGGATACAGGGCTTTTTGTGATGACAATATGACCCACAGTA
AAGGAAGACCTGCCACTTACAAGACAAGTGCCAGTCCGGAGAGCGGAGGGGGTTTTGTAGATTG
GACTTTAAATTTAAATACAATTCAATCTGACAAGTTTCTAAACTTACTGTTAAGCATGGTGCCA
GTCATTTACCAGAAAAACCAGGAAGACAGGCATAAAAAAGTCAACGGCATTTGGCAGGACGGGC
TGTCTGGTGCGGCACAAACTTTCAGCAAGAGATCGGAGCCACATCTGGACTACCATGAGTTCTC
CGAGCAGGCCTTCCACAGCGGCGGTGGCCATACCCCAGCCAGCTGCAGCCCCAGGTACGACGAC
TATGCCGGCTATAACTACTGTGACGGAAGGGAGGCCTCAGAAACCACCGCCATGTTACAAGATG
AAGATCCGTCCAGTCAGGGCGATGACGTTATTGTGGAAACAAGCCAGAGGCTCCCGAAGGAATC
CAGTGGAGTCATGGCTCTGCAGATACTTGTGCCATTCTTGCTGGCCGGTTTTGGAACTGTTTCC
GCTGGCATGGTTTTGGACATAGTGCAGCACTGGGAGGTGTTCAAAAACGTGACAGAAGTCTTCA
TTTTGGTGCCCGCGCTTCTTGGTCTGAAAGGGAACTTGGAAATGACATTGGCGTCTCGATTATC
CACTGCAGTGAATGTCGGGAAGATGGACTCACCCATTGAGAAGTGGAATCTAATCATAGGCAAC
TTGGCTTTGAAGCAGGTGCAGGCCACAGTAGTTGGTTTTCTGGCAGCTGTGGCAGCGATCATAC
TGGGCTGGATTCCGGAAGGGAAATATTACCTCAGCCATTCCATACTCCTGTGCTCCAGCAGTGT
GGCAACCGCCTTCATTGCGTCTCTCCTGCAGGGAATAATAATGGTTGGAGTTATCGTTGGCTCC
AAGAAGACAGGCATAAACCCCGACAACGTGGCCACACCCATTGCTGCTAGTTTTGGTGATCTGA
TAACTCTGGCCATATTAGCTTGGATAAGTCAGGGTTTGTACTCCTGTCTTGCTGCCAAGCACCC
AGCTACCAGGACAGTGCTCCACTCGGGCTGGGAGCCAGTCATAACAGCCATGGTTATAAGCAGC
ATCGGGGGCCTTATTCTGGACACAACCGTATCTGACCCAAACTTGGTTGGGATTGTTGTTTACA
CGCCAGTTATCAACGGGATCGGTGGCAATTTGGTGGCCATTCAGGCTAGCAGGATTTCTACCTA
CCTCCATTTACACAGCCTCCCCGGAGAACTACCTGAGGAGCCCAAAGGCTGCTCCTACCCATTT
AGGACGTTTTTTGGTTCAGGAGTGAACAATAAGTCTGCCCAGGTTCTCCTGCTCTTCGTGATTC
CCGGCCACCTGATCTTCCTCTACACAATCCATCTGATGAAGAGCGGCCACACCTCTCTGACTGT
AGTCTTTGTTGTTGTGTACCTGCTTGCTGCTGTGCTCCAGGTGTTCACCCTGCTGTGGATCGCT
GACTGGATGGTCCATCGCTTCTGGAGGAAAGGAAAGGACCCAGATAGTTTCTCCATCCCGTACC
TGACGGCGCTAGGCGACCTGCTTGGGACCGCTCTGCTGGCCTTAAGCTTCCATTTTCTCTGGCT
TATCGGAGACCGAGATGGCGACGTTGGAGACTAACGGACCGACAAGCTGCCGTGGGGTCACCCG
GGGGGAGAACACAGGCAGCCATTGCTGCCCCTCCAAAGCTCTTCATCTGTCCTGTGACTTACGC
CAGGGTAGTCTGCGGTTCACCCTGACTCCATAAATGGCCTTAACGTACTTTTTAAGGGATTTGT
GAATCTGAAACCACATGAAAGGTATTTGTGCTGCTTTTTTGTAGAATAAATAATTTGACACAGA
CATAGATACAAGCTCACACTCTAAAGTCAATTAGGGAAGAATATAGGATGTTTACAATGAGTTA
ATTTTGAAACCACAGACCCGGCAGAAGTATACTTTATTATTAAGTTATAATGCACAGTTAGAGG
CAAGGTGGCTTTACCCTTCTCTGTCTTACGGCTGTGTCACACTACAAAGAGTGCCATGACCTGG
TACCATCTGAGCTTCCCTAAGTGTTAATTAACTAGGCCTTCCTCCTCGGGAGCTAAGGTTCATT
CCCCGAACATGGCAACCAGCTCGCTTTTACCCGAGTCTCAAACTGCCCCCGCCAACTCTGCGAG
TTCTCAACAGCCAACCCTTTGAGTAGATTCTTTTTCTTTTGTGGAGACAGGGCTTGCTCTCTGT
GTTGTCCCCGCAAGCCTTCAGCTTGCCGTCCTCTTGCTTCGGTTCCCTCCACCTGGTGCTAAAA
GCACTGAGCAGTCTCACTCATCCTGTGTTGAAAATGTTGATCTAATTTAGGAAACTGTGATGAA
AGCAGGAGGTCAGTTGAGCTGTGTTTGTGGGCACAGGGTGGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGCGCGCGCGTGCGCGTGCGTGTGCGTGTTT
GTGCCGTGTGTATATGTGTGTGTATACGTGTGTGCACATGTCTGCATGTGTGTGCGTGCATGTG
TATATACATGCATGTGTGTACATACGTGTGTGTGTGTGTATGTGTATGTGTGTATGCGTATGTG
TGACATATGTGTGAGACAGACCAGAGAGAGGGGGGGGAAGCACTTTTCAAAAATAAGTACCATT
TAATATAATGCAGCTGTAAAATCTGGCAAGAGCAGGCGGTCCTGTTGCCCTTTAAGGCGCCCTT
CCTGTGGATGTCCCTCCAAAGGAGAAGTTGGTGACTTACCTCATTACCTCAGCATCCATCTTAT
CACTTCATCTACAGGGACCGCCTCACGTATGCGGCTGTATTCCTCAGATATCCTGAAACTTTGG
CCAATATCGTAAGCACCTTAACCCCTGGCTACTCAGTTGTAAGCACTTTTAGATCACTTAGCAC
TTAAAAGTGCCGTGCAATCTTTCAAGGCCGTTAAATGTCTAATAATTTAAACTGCTGAGGGGAT
AAGACCCGCATGGCGTTGGTTGTCATGGCGAGGTTGTGCGGGTGGCTTTTGAATAGACTGCAGA
AGTATTATTATTAAGTCTTCGTGGAGTCTGTGGTTTAGAGTGGAGTATTTTTGCTTTTTTTTAA
ACTTCGTTCAGTTCTCCGGCCTTATAATCAAACTTTTAAGGCATAGAACTGAATGAACTATGGA
TCTCTCCTTTGGAGAGTTAGTGTCACAGAGGGGACATTCTGACAAAATAAGCGTAAAGTTTAAG
TTAATGAGTAAATAGTTGCAAAGATTATTTTATTTTTGAAAAAGTTAATGAATACTCCCTTTCA
TTTATATAAAAACATTTGTGAATTTGGGTTTTGCATTTGGCTGTATGCTCTTTTTTTGTTTGTT
TGTTTTGAGTCTTGCCCAGGCTGGGTTTAAACTTCGGATCCACCTGTCTTTGCCTCCTGGGATT
CATTTTCTTTAACTCACAAAAAAATATGCAGAGTAAGCCCCAGTGTTAGCCAGTGTTAGCCAGT
GTTAGCCTGTGTTAGCCAGTGTTAGCCTGGCTGACAGTGTTCTGCACATTCCTAAGCACAGGAA
GATGCGTGCTGACAGCATCAGCACCTTGTGGGTGGGTTGAATGGAGACTCCTGTCTGGGTTTTG
TCACAGGGGCCATGGACATGCAGAGGAGTGACATTTGTAAGATTTCACAGCCACACAGTGGGCA
GACCCGTCTGGACCAGTACATCTTGTCATACATGTGTGTCCCACCCCCAAATGTACAGTGTCCA
CCTAGTTACCTGAGAGAACGCCCCAGTCAAGTGTTACTAGTCTTTTAGATTTCAGCAGGGAAGC
CTCCACCTAATGTGGACCAACTCTGAACTATTCCTGTCCCTAAGGTCAGAGAGGCCATAAATGA
ACATTTACCTTATATTTTTATTTCATAATGAAATCTTTTAGGCCAAACAACAATGTCTCGCTTC
TTAAAGCCACAAAGAGCCAACCCCCCTCCTAGATCCGCTGTGCCAGGACGGATAGTGGGAGGCT
GATTCTCAACCTTTACCAGAACAGCAAAATGTCTAAGACACATGTAACGGGCAAAAACAGAATG
CTCAGACCAAATGCGTTGTAAAGTGATATGCACTGTTAATTACAGATCTTTGAAAGTCTCTGTG
CACATATGTAAGTTTTATTCAACCATAAAATTTATTATCAGTCTTAGGTAAATGAACAGTATTT
TTATACCACATAAACCCTGCTTTCCAAAACTCATTTCCCTCTAACTTACCAGGCACATTATACA
CACAGC

hide sequence

RefSeq Acc Id:

NM_001401081 ⟹ NP_001388010

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,271,313 - 22,378,764 (+)	NCBI
mRatBN7.2	7	20,383,714 - 20,491,178 (+)	NCBI

RefSeq Acc Id:

NM_001401082 ⟹ NP_001388011

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,271,717 - 22,378,764 (+)	NCBI
mRatBN7.2	7	20,384,118 - 20,491,178 (+)	NCBI

RefSeq Acc Id:

XM_039079422 ⟹ XP_038935350

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,282,933 - 22,378,764 (+)	NCBI
mRatBN7.2	7	20,395,347 - 20,491,178 (+)	NCBI

RefSeq Acc Id:

XM_039079423 ⟹ XP_038935351

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,280,781 - 22,378,764 (+)	NCBI
mRatBN7.2	7	20,393,163 - 20,491,178 (+)	NCBI

RefSeq Acc Id:

XM_039079426 ⟹ XP_038935354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,280,769 - 22,378,764 (+)	NCBI
mRatBN7.2	7	20,393,163 - 20,491,178 (+)	NCBI

RefSeq Acc Id:

XM_039079427 ⟹ XP_038935355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,282,925 - 22,378,764 (+)	NCBI
mRatBN7.2	7	20,395,341 - 20,491,178 (+)	NCBI

RefSeq Acc Id:

XM_039079428 ⟹ XP_038935356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,282,923 - 22,370,724 (+)	NCBI
mRatBN7.2	7	20,395,339 - 20,483,132 (+)	NCBI

RefSeq Acc Id:

XM_063263757 ⟹ XP_063119827

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,271,298 - 22,370,724 (+)	NCBI

RefSeq Acc Id:

XM_063263758 ⟹ XP_063119828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	22,280,768 - 22,370,724 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102212	(Get FASTA)	NCBI Sequence Viewer
	NP_001388010	(Get FASTA)	NCBI Sequence Viewer
	NP_001388011	(Get FASTA)	NCBI Sequence Viewer
	XP_038935350	(Get FASTA)	NCBI Sequence Viewer
	XP_038935351	(Get FASTA)	NCBI Sequence Viewer
	XP_038935354	(Get FASTA)	NCBI Sequence Viewer
	XP_038935355	(Get FASTA)	NCBI Sequence Viewer
	XP_038935356	(Get FASTA)	NCBI Sequence Viewer
	XP_063119827	(Get FASTA)	NCBI Sequence Viewer
	XP_063119828	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ABG37969	(Get FASTA)	NCBI Sequence Viewer
	EDM17077	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011572
	ENSRNOP00000011572.8
	ENSRNOP00000099487
	ENSRNOP00000099487.1
	ENSRNOP00000102475
	ENSRNOP00000102475.1
	ENSRNOP00000107703.1
	ENSRNOP00000108613
	ENSRNOP00000108613.1

RefSeq Acc Id:	NP_001102212 ⟸ NM_001108742
- Peptide Label:	isoform 2
- UniProtKB:	A6IFH1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTHSKGRPATYKTSASPESGGGFVDWTLNLNTIQSDKFLNLLLSMVPVIYQKNQEDRHKKVNGI WQDGLSGAAQTFSKRSEPHLDYHEFSEQAFHSGGGHTPASCSPRYDDYAGYNYCDGREASETTA MLQDEDPSSQGDDVIVETSQRLPKESSGVMALQILVPFLLAGFGTVSAGMVLDIVQHWEVFKNV TEVFILVPALLGLKGNLEMTLASRLSTAVNVGKMDSPIEKWNLIIGNLALKQVQATVVGFLAAV AAIILGWIPEGKYYLSHSILLCSSSVATAFIASLLQGIIMVGVIVGSKKTGINPDNVATPIAAS FGDLITLAILAWISQGLYSCLAAKHPATRTVLHSGWEPVITAMVISSIGGLILDTTVSDPNLVG IVVYTPVINGIGGNLVAIQASRISTYLHLHSLPGELPEEPKGCSYPFRTFFGSGVNNKSAQVLL LFVIPGHLIFLYTIHLMKSGHTSLTVVFVVVYLLAAVLQVFTLLWIADWMVHRFWRKGKDPDSF SIPYLTALGDLLGTALLALSFHFLWLIGDRDGDVGD hide sequence

Ensembl Acc Id:

ENSRNOP00000011572 ⟸ ENSRNOT00000011572

RefSeq Acc Id:	XP_038935351 ⟸ XM_039079423
- Peptide Label:	isoform X1
- UniProtKB:	D4A7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935354 ⟸ XM_039079426
- Peptide Label:	isoform X1
- UniProtKB:	D4A7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935356 ⟸ XM_039079428
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038935355 ⟸ XM_039079427
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038935350 ⟸ XM_039079422
- Peptide Label:	isoform X1
- UniProtKB:	D4A7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388010 ⟸ NM_001401081
- Peptide Label:	isoform 1
- UniProtKB:	D4A7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001388011 ⟸ NM_001401082
- Peptide Label:	isoform 1
- UniProtKB:	D4A7D4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063119827 ⟸ XM_063263757
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063119828 ⟸ XM_063263758
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000099487 ⟸ ENSRNOT00000138998

Ensembl Acc Id:

ENSRNOP00000108613 ⟸ ENSRNOT00000167280

Ensembl Acc Id:

ENSRNOP00000107703 ⟸ ENSRNOT00000169359

Ensembl Acc Id:

ENSRNOP00000102475 ⟸ ENSRNOT00000130064

Protein Domains

SLC41A/MgtE integral membrane

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7D4-F1-model_v2	AlphaFold	D4A7D4	1-548	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307292	AgrOrtholog
BioCyc Gene	G2FUF-34581	BioCyc
Ensembl Genes	ENSRNOG00000008713	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011572	ENTREZGENE
	ENSRNOT00000011572.8	UniProtKB/TrEMBL
	ENSRNOT00000130064	ENTREZGENE
	ENSRNOT00000130064.1	UniProtKB/TrEMBL
	ENSRNOT00000138998	ENTREZGENE
	ENSRNOT00000138998.1	UniProtKB/TrEMBL
	ENSRNOT00000167280	ENTREZGENE
	ENSRNOT00000167280.1	UniProtKB/TrEMBL
	ENSRNOT00000169359.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.357.20	UniProtKB/TrEMBL
InterPro	MgtE_Mg_transptr_membr	UniProtKB/TrEMBL
	SLC41_membr_dom_sf	UniProtKB/TrEMBL
	SLC41A1-3	UniProtKB/TrEMBL
KEGG Report	rno:362861	UniProtKB/TrEMBL
NCBI Gene	362861	ENTREZGENE
PANTHER	PTHR16228	UniProtKB/TrEMBL
	SOLUTE CARRIER FAMILY 41 MEMBER 2	UniProtKB/TrEMBL
Pfam	MgtE	UniProtKB/TrEMBL
PhenoGen	Slc41a2	PhenoGen
RatGTEx	ENSRNOG00000008713	RatGTEx
Superfamily-SCOP	SSF161093	UniProtKB/TrEMBL
UniProt	A0ABK0KXK2_RAT	UniProtKB/TrEMBL
	A0ABK0LAR8_RAT	UniProtKB/TrEMBL
	A0ABK0LLB8_RAT	UniProtKB/TrEMBL
	A0ABK0LTE7_RAT	UniProtKB/TrEMBL
	A6IFH1	ENTREZGENE, UniProtKB/TrEMBL
	D4A7D4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc41a2	solute carrier family 41 member 2	Slc41a2	solute carrier family 41 (magnesium transporter), member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc41a2	solute carrier family 41 (magnesium transporter), member 2	Slc41a2	solute carrier family 41, member 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc41a2	solute carrier family 41, member 2	Slc41a2_predicted	solute carrier family 41, member 2 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc41a2_predicted	solute carrier family 41, member 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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