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Gene: Raly (RALY heterogeneous nuclear ribonucleoprotein) Rattus norvegicus

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Symbol:

Raly

Name:

RALY heterogeneous nuclear ribonucleoprotein

RGD ID:

1307228

Description:

Predicted to enable RNA binding activity; identical protein binding activity; and transcription coregulator activity. Predicted to be involved in cholesterol homeostasis and negative regulation of transcription by RNA polymerase II. Predicted to be part of catalytic step 2 spliceosome. Predicted to be active in nucleus. Orthologous to human RALY (RALY heterogeneous nuclear ribonucleoprotein); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; aconitine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hnRNP-associated with lethal yellow; LOC296301; RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)); RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog); RNA-binding protein Raly

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RALY (RALY heterogeneous nuclear ribonucleoprotein)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Raly (hnRNP-associated with lethal yellow)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Raly (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RALY (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RALY (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Raly (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RALY (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RALY (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Raly (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Raly (RALY heterogeneous nuclear ribonucleoprotein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RALY (RALY heterogeneous nuclear ribonucleoprotein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Raly (hnRNP-associated with lethal yellow)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	raly (RALY heterogeneous nuclear ribonucleoprotein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	raly (RALY heterogeneous nuclear ribonucleoprotein)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	NAB3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG42458	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	ztf-4	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	raly	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	raly	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	163,766,183 - 163,830,726 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	163,766,478 - 163,830,740 (+)	Ensembl				GRCr8
mRatBN7.2	3	143,306,039 - 143,370,542 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	143,306,300 - 143,370,539 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	147,174,011 - 147,238,113 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	155,791,306 - 155,855,407 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	153,530,823 - 153,594,931 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	150,322,834 - 150,387,345 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	150,323,116 - 150,387,332 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	156,695,466 - 156,756,864 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	145,275,832 - 145,337,808 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	142,036,369 - 142,100,716 (+)	NCBI		Celera
RGSC_v3.1	3	145,181,453 - 145,243,415 (+)	NCBI
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amphetamine abuse (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3',5'-cyclic UMP (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

actinomycin D (ISO)

all-trans-retinoic acid (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

caffeine (ISO)

CGP 52608 (ISO)

copper(II) sulfate (ISO)

deoxynivalenol (ISO)

diarsenic trioxide (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

ethanol (ISO)

fenthion (ISO)

FR900359 (ISO)

furan (EXP)

hexane (EXP)

ivermectin (ISO)

lead(0) (ISO)

methamphetamine (ISO)

methapyrilene (EXP,ISO)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel sulfate (ISO)

Nutlin-3 (ISO)

okadaic acid (ISO)

paracetamol (ISO)

perfluorooctanoic acid (ISO)

permethrin (EXP)

pirinixic acid (ISO)

quercetin (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

thiram (ISO)

titanium dioxide (ISO)

Tributyltin oxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cholesterol homeostasis (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

Cellular Component

catalytic step 2 spliceosome (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

identical protein binding (ISO)

nucleic acid binding (IEA)

protein binding (ISO)

RNA binding (IBA,IEA,ISO)

transcription coregulator activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11991638	PMID:12477932	PMID:22658674	PMID:22681889	PMID:22720776	PMID:24625528	PMID:27251289	PMID:31505169

Genomics

Comparative Map Data

Raly
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	163,766,183 - 163,830,726 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	163,766,478 - 163,830,740 (+)	Ensembl				GRCr8
mRatBN7.2	3	143,306,039 - 143,370,542 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	143,306,300 - 143,370,539 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	147,174,011 - 147,238,113 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	155,791,306 - 155,855,407 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	153,530,823 - 153,594,931 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	150,322,834 - 150,387,345 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	150,323,116 - 150,387,332 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	156,695,466 - 156,756,864 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	145,275,832 - 145,337,808 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	142,036,369 - 142,100,716 (+)	NCBI		Celera
RGSC_v3.1	3	145,181,453 - 145,243,415 (+)	NCBI
Cytogenetic Map	3	q41	NCBI

RALY
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	33,993,911 - 34,084,884 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	33,993,632 - 34,108,308 (+)	Ensembl			hg38	GRCh38
GRCh37	20	32,581,717 - 32,672,690 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	32,045,393 - 32,131,728 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	32,045,392 - 32,131,726	NCBI
Celera	20	29,334,503 - 29,420,881 (+)	NCBI		Celera
Cytogenetic Map	20	q11.22	NCBI
HuRef	20	29,366,697 - 29,455,946 (+)	NCBI		HuRef
CHM1_1	20	32,482,947 - 32,572,480 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	35,720,262 - 35,811,292 (+)	NCBI		T2T-CHM13v2.0

Raly
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	154,632,989 - 154,712,930 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	154,633,016 - 154,709,181 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	154,790,920 - 154,871,010 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	154,791,096 - 154,867,261 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	154,616,846 - 154,692,997 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	154,482,598 - 154,558,685 (+)	NCBI		MGSCv36	mm8
Celera	2	160,719,038 - 160,795,242 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	76.83	NCBI

Raly
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	27,269,167 - 27,315,143 (-)	Ensembl
ChiLan1.0	NW_004955422	27,269,167 - 27,360,224 (-)	NCBI	ChiLan1.0	ChiLan1.0

RALY
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	39,689,289 - 39,774,941 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	39,682,045 - 39,768,043 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	30,285,024 - 30,371,039 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	31,424,564 - 31,510,187 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	31,501,993 - 31,510,187 (+)	Ensembl			panPan2	panpan1.1

RALY
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	23,173,209 - 23,258,712 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	23,173,650 - 23,257,138 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	22,818,109 - 22,903,312 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	23,859,556 - 23,945,768 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	23,860,001 - 23,948,618 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	23,152,407 - 23,238,168 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	23,246,322 - 23,332,098 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	23,683,473 - 23,769,187 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Raly
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	172,108,290 - 172,188,782 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	6,562,421 - 6,641,961 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	6,560,773 - 6,641,348 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RALY
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	37,448,117 - 37,542,454 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	37,447,827 - 37,542,461 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	42,870,964 - 42,965,792 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	17	q21	NCBI

RALY
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	38,271,971 - 38,360,097 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	38,271,924 - 38,358,379 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	88,521,311 - 88,608,218 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Raly
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624842	5,237,571 - 5,315,619 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Raly
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	134,168,933 - 134,238,944 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Raly
883 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	46
Count of miRNA genes:	39
Interacting mature miRNAs:	44
Transcripts:	ENSRNOT00000023429
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161799493	176036425	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	160357340	167835660	Rat

Markers in Region

RH127439

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	143,370,397 - 143,370,521 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	150,387,201 - 150,387,324	NCBI	Rnor6.0
Celera	3	142,100,582 - 142,100,705	UniSTS
RH 3.4 Map	3	1294.1	UniSTS
Cytogenetic Map	3	q41	UniSTS

BF397999

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	143,318,376 - 143,318,497 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	150,335,187 - 150,335,307	NCBI	Rnor6.0
Rnor_5.0	3	156,707,584 - 156,707,674	NCBI	Rnor5.0
RGSC_v3.4	3	145,287,795 - 145,287,915	UniSTS	RGSC3.4
Celera	3	142,048,343 - 142,048,463	UniSTS
RH 3.4 Map	16	623.2	UniSTS
Cytogenetic Map	3	q41	UniSTS

Raly

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	143,306,349 - 143,306,496 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	150,323,145 - 150,323,291	NCBI	Rnor6.0
Rnor_5.0	3	156,695,387 - 156,695,533	UniSTS	Rnor5.0
RGSC_v3.4	3	145,275,753 - 145,275,899	UniSTS	RGSC3.4
Celera	3	142,036,290 - 142,036,436	UniSTS
Cytogenetic Map	3	q41	UniSTS

MARC_6533-6534:992007280:1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	143,365,841 - 143,367,491 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	150,382,645 - 150,384,294	NCBI	Rnor6.0
Rnor_5.0	3	156,754,759 - 156,756,408	UniSTS	Rnor5.0
RGSC_v3.4	3	145,335,702 - 145,337,351	UniSTS	RGSC3.4
Celera	3	142,096,026 - 142,097,675	UniSTS
Cytogenetic Map	3	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591606	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC135822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000023429 ⟹ ENSRNOP00000023429

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	163,766,478 - 163,830,651 (+)	Ensembl
mRatBN7.2 Ensembl	3	143,306,302 - 143,370,532 (+)	Ensembl
Rnor_6.0 Ensembl	3	150,323,116 - 150,386,119 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080485 ⟹ ENSRNOP00000074887

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	163,766,478 - 163,830,740 (+)	Ensembl
mRatBN7.2 Ensembl	3	143,306,312 - 143,370,539 (+)	Ensembl
Rnor_6.0 Ensembl	3	150,323,224 - 150,387,332 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119280 ⟹ ENSRNOP00000086792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	163,767,025 - 163,830,723 (+)	Ensembl
mRatBN7.2 Ensembl	3	143,306,300 - 143,368,893 (+)	Ensembl

RefSeq Acc Id:

NM_001011958 ⟹ NP_001011958

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,607 - 163,830,726 (+)	NCBI
mRatBN7.2	3	143,306,429 - 143,370,532 (+)	NCBI
Rnor_6.0	3	150,323,224 - 150,387,335 (+)	NCBI
Rnor_5.0	3	156,695,466 - 156,756,864 (+)	NCBI
RGSC_v3.4	3	145,275,832 - 145,337,808 (+)	RGD
Celera	3	142,036,369 - 142,100,716 (+)	RGD

Sequence:

show sequence

CCCGCCTTCCGAGAGCAGACGCGCCGTCGCCTTCCGTGCCGCGCGGCTTCCTCCAGACCTCAGC
GCGGGTGAGCCCTATTTCTAGAGACAGCTGCTGCTGACCCTGTAACCCAAAGGACAAAATAGCT
GGCTAAACTCATTCTTGGTACTGGTGCACACCATGTCCTTGAAGATTCAGACCAGCAATGTAAC
CAACAAGAATGACCCTAAGTCCATCAACTCTCGGGTCTTCATTGGAAACCTAAACACAGCTGTA
GTGAAGAAGTCAGATGTGGAGACCATCTTTTCCAAATATGGCCGTGTGGCTGGCTGTTCTGTGC
ACAAAGGTTATGCTTTTGTCCAGTATGCCAATGAGCGCCATGCCCGAGCAGCTGTGCTGGGAGA
GAATGGGCGGGTGCTGGCTGGACAGACCCTGGACATCAACATGGCTGGAGAGCCCAAGCCTAAT
AGACCCAAGGGGCTAAAGAGAGCAGCAACTGCCATATACAGGCTGTTTGATTATCGAGGCCGAC
TTTCTCCAGTGCCTGTGCCCCGGGCAGTTCCCGTGAAGCGACCCCGTGTTACAGTCCCTTTGGT
TCGCCGTGTCAAAACTACAATACCTGTCAAGCTCTTTGCCCGTTCCACAGCTATCTCTACTGGC
TCAGCCAAGATCAAGTTAAAGAGCAGTGAGCTACAGACCATCAAAACGGAGCTGACACAGATCA
AGTCCAACATTGATGCCCTTTTGGGTCGCTTGGAGCAGATTGCTGAGGAACAGAAGGCCAATCC
AGATGGCAAGAAGAAGGGTGACAGCAGCAGTGGTGGAGGAGGGGGCAGCAGCAGTGGTGGAGGC
GGCAGTGGCAATGTTGGTAGTGGCGGCAGCGGTGGCAGTGGGAGCAGCAGCAGCCGGCCACCAG
CACCCCAAGAAGACACAGCTTCTGAGGCAGGCACACCCCAAGGAGAAGTCCAAACTCGAGATGA
TGGTGATGAGGAGGGACTGCTCACACATAGCGAGGAGGAGCTGGAGCACAGCCAGGACACAGAT
GCAGAAGATGGGGCCTTGCAGTAAGCAGGAGCATTGGCCATCAGCAGAAGGGCATCACTGTCTC
AGGCCTCAAGCCAGGCACCCATCTCTGGATGCCAGTCTAGAGAGAGTACCAGAGGAAGGCTGGC
AGCAGTAACTTCTCTCCCCATTGCATCCCAGCCAGTGAGTGCTACATCCTTTGCAAGTGGAGTT
ACTGGCCTACCCTTATCCCACGCACTCTTCCTGTCTGCACTGCCTGGGCCAAGGGGCAGAAGCA
CTCTGCTCTTTTTTTCCCAGGACATTCCCAGGCTTGGGGTTTTTCTATAGGTTTGAAAGTAAAG
GGGGTTGTGAAGGGCGGCACGGGGGGTAGGGAGGGCTGACAATAAAGAGATTGGATCCAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008762314 ⟹ XP_008760536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,183 - 163,830,726 (+)	NCBI
mRatBN7.2	3	143,306,039 - 143,370,542 (+)	NCBI
Rnor_6.0	3	150,322,834 - 150,387,345 (+)	NCBI

Sequence:

show sequence

AAGCTCTGGACCTTTCCAAAGCCCGGCGCGAGGGGTGAGCGGGGAGCCCACGCGTCTGGAGAGG
CAGGCTCGTGCAGGGCGGCGCCGAGGACTGAGTGGTCCGGTGGCTGGATCCGACCCGGACGACG
AGGACGAGAACTGGGCCGGAGCCGGGGCGGCGGCAGGCCGAGTGCAGAGGTCTGTCCAGCACTC
TCCCTCCCCGCGCTCGCCCAAGTGGTGGCGGCCGAGCGAAGGACTCAGGGCTGCGGGGCTCGGG
CCTCTGTCAGTGCGGCGGGACGCGCGAGCGGCGCGGGGCGCGGAGCCGAGGGAAGCCGAGGGGG
CGGAAGCGGTCGCGACTCTTAGCGCGTGTGCTCGGGCTCCTCACGTGGCGGCCGGGGCCGCCTG
TTCCCTCCCGCCTTCCGAGAGCAGACGCGCCGTCGCCTTCCGTGCCGCGCGGCTTCCTCCAGAC
CTCAGCGCGGGTGAGCCCTATTTCTAGAGACAGCTGCTGCTGACCCTGTAACCCAAAGGACAAA
ATAGCTGGCTAAACTCATTCTTGGTACTGGTGCACACCATGTCCTTGAAGATTCAGACCAGCAA
TGTAACCAACAAGAATGACCCTAAGTCCATCAACTCTCGGGTCTTCATTGGAAACCTAAACACA
GCTGTAGTGAAGAAGTCAGATGTGGAGACCATCTTTTCCAAATATGGCCGTGTGGCTGGCTGTT
CTGTGCACAAAGGTTATGCTTTTGTCCAGTATGCCAATGAGCGCCATGCCCGAGCAGCTGTGCT
GGGAGAGAATGGGCGGGTGCTGGCTGGACAGACCCTGGACATCAACATGGCTGGAGAGCCCAAG
CCTAATAGACCCAAGGGGCTAAAGAGAGCAGCAACTGCCATATACAGCGGCTACAGCTTTGACT
ATGATTACTACCAAGACTACTACTGTGCCAGGCTGTTTGATTATCGAGGCCGACTTTCTCCAGT
GCCTGTGCCCCGGGCAGTTCCCGTGAAGCGACCCCGTGTTACAGTCCCTTTGGTTCGCCGTGTC
AAAACTACAATACCTGTCAAGCTCTTTGCCCGTTCCACAGCTATCTCTACTGGCTCAGCCAAGA
TCAAGTTAAAGAGCAGTGAGCTACAGACCATCAAAACGGAGCTGACACAGATCAAGTCCAACAT
TGATGCCCTTTTGGGTCGCTTGGAGCAGATTGCTGAGGAACAGAAGGCCAATCCAGATGGCAAG
AAGAAGGGTGACAGCAGCAGTGGTGGAGGAGGGGGCAGCAGCAGTGGTGGAGGCGGCAGTGGCA
ATGTTGGTAGTGGCGGCAGCGGTGGCAGTGGGAGCAGCAGCAGCCGGCCACCAGCACCCCAAGA
AGACACAGCTTCTGAGGCAGGCACACCCCAAGGAGAAGTCCAAACTCGAGATGATGGTGATGAG
GAGGGACTGCTCACACATAGCGAGGAGGAGCTGGAGCACAGCCAGGACACAGATGCAGAAGATG
GGGCCTTGCAGTAAGCAGGAGCATTGGCCATCAGCAGAAGGGCATCACTGTCTCAGGCCTCAAG
CCAGGCACCCATCTCTGGATGCCAGTCTAGAGAGAGTACCAGAGGAAGGCTGGCAGCAGTAACT
TCTCTCCCCATTGCATCCCAGCCAGTGAGTGCTACATCCTTTGCAAGTGGAGTTACTGGCCTAC
CCTTATCCCACGCACTCTTCCTGTCTGCACTGCCTGGGCCAAGGGGCAGAAGCACTCTGCTCTT
TTTTTCCCAGGACATTCCCAGGCTTGGGGTTTTTCTATAGGTTTGAAAGTAAAGGGGGTTGTGA
AGGGCGGCACGGGGGGTAGGGAGGGCTGACAATAAAGAGATTGGATCCAAATACGCTCTGA

hide sequence

RefSeq Acc Id:

XM_008762315 ⟹ XP_008760537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,423 - 163,830,726 (+)	NCBI
mRatBN7.2	3	143,306,233 - 143,370,542 (+)	NCBI
Rnor_6.0	3	150,323,038 - 150,387,345 (+)	NCBI

Sequence:

show sequence

CTCGCCCAAGTGGTGGCGGCCGAGCGAAGGACTCAGGGCTGCGGGGCTCGGGCCTCTGTCAGTG
CGGCGGGACGCGCGAGCGGCGCGGGGCGCGGAGCCGAGGGAAGCCGAGGGGGCGGAAGCGGTCG
CGACTCTTAGCGCGTGTGCTCGGGCTCCTCACGTGGCGGCCGGGGCCGCCTGTTCCCTCCCGCC
TTCCGAGAGCAGACGCGCCGTCGCCTTCCGTGCCGCGCGGCTTCCTCCAGACCTCAGCGCGGGT
GCACACCATGTCCTTGAAGATTCAGACCAGCAATGTAACCAACAAGAATGACCCTAAGTCCATC
AACTCTCGGGTCTTCATTGGAAACCTAAACACAGCTGTAGTGAAGAAGTCAGATGTGGAGACCA
TCTTTTCCAAATATGGCCGTGTGGCTGGCTGTTCTGTGCACAAAGGTTATGCTTTTGTCCAGTA
TGCCAATGAGCGCCATGCCCGAGCAGCTGTGCTGGGAGAGAATGGGCGGGTGCTGGCTGGACAG
ACCCTGGACATCAACATGGCTGGAGAGCCCAAGCCTAATAGACCCAAGGGGCTAAAGAGAGCAG
CAACTGCCATATACAGCGGCTACAGCTTTGACTATGATTACTACCAAGACTACTACTGTGCCAG
GCTGTTTGATTATCGAGGCCGACTTTCTCCAGTGCCTGTGCCCCGGGCAGTTCCCGTGAAGCGA
CCCCGTGTTACAGTCCCTTTGGTTCGCCGTGTCAAAACTACAATACCTGTCAAGCTCTTTGCCC
GTTCCACAGCTATCTCTACTGGCTCAGCCAAGATCAAGTTAAAGAGCAGTGAGCTACAGACCAT
CAAAACGGAGCTGACACAGATCAAGTCCAACATTGATGCCCTTTTGGGTCGCTTGGAGCAGATT
GCTGAGGAACAGAAGGCCAATCCAGATGGCAAGAAGAAGGGTGACAGCAGCAGTGGTGGAGGAG
GGGGCAGCAGCAGTGGTGGAGGCGGCAGTGGCAATGTTGGTAGTGGCGGCAGCGGTGGCAGTGG
GAGCAGCAGCAGCCGGCCACCAGCACCCCAAGAAGACACAGCTTCTGAGGCAGGCACACCCCAA
GGAGAAGTCCAAACTCGAGATGATGGTGATGAGGAGGGACTGCTCACACATAGCGAGGAGGAGC
TGGAGCACAGCCAGGACACAGATGCAGAAGATGGGGCCTTGCAGTAAGCAGGAGCATTGGCCAT
CAGCAGAAGGGCATCACTGTCTCAGGCCTCAAGCCAGGCACCCATCTCTGGATGCCAGTCTAGA
GAGAGTACCAGAGGAAGGCTGGCAGCAGTAACTTCTCTCCCCATTGCATCCCAGCCAGTGAGTG
CTACATCCTTTGCAAGTGGAGTTACTGGCCTACCCTTATCCCACGCACTCTTCCTGTCTGCACT
GCCTGGGCCAAGGGGCAGAAGCACTCTGCTCTTTTTTTCCCAGGACATTCCCAGGCTTGGGGTT
TTTCTATAGGTTTGAAAGTAAAGGGGGTTGTGAAGGGCGGCACGGGGGGTAGGGAGGGCTGACA
ATAAAGAGATTGGATCCAAATACGCTCTGA

hide sequence

RefSeq Acc Id:

XM_008762317 ⟹ XP_008760539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,197 - 163,830,726 (+)	NCBI
mRatBN7.2	3	143,306,237 - 143,370,542 (+)	NCBI
Rnor_6.0	3	150,323,041 - 150,387,345 (+)	NCBI

Sequence:

show sequence

GCCCAAGTGGTGGCGGCCGAGCGAAGGACTCAGGGCTGCGGGGCTCGGGCCTCTGTCAGTGCGG
CGGGACGCGCGAGCGGCGCGGGGCGCGGAGCCGAGGGAAGCCGAGGGGGCGGAAGCGGTCGCGA
CTCTTAGCGCGTGTGCTCGGGCTCCTCACGTGGCGGCCGGGGCCGCCTGTTCCCTCCCGCCTTC
CGAGAGCAGACGCGCCGTCGCCTTCCGTGCCGCGCGGCTTCCTCCAGACCTCAGCGCGGGTGCA
CACCATGTCCTTGAAGATTCAGACCAGCAATGTAACCAACAAGAATGACCCTAAGTCCATCAAC
TCTCGGGTCTTCATTGGAAACCTAAACACAGCTGTAGTGAAGAAGTCAGATGTGGAGACCATCT
TTTCCAAATATGGCCGTGTGGCTGGCTGTTCTGTGCACAAAGGTTATGCTTTTGTCCAGTATGC
CAATGAGCGCCATGCCCGAGCAGCTGTGCTGGGAGAGAATGGGCGGGTGCTGGCTGGACAGACC
CTGGACATCAACATGGCTGGAGAGCCCAAGCCTAATAGACCCAAGGGGCTAAAGAGAGCAGCAA
CTGCCATATACAGGCTGTTTGATTATCGAGGCCGACTTTCTCCAGTGCCTGTGCCCCGGGCAGT
TCCCGTGAAGCGACCCCGTGTTACAGTCCCTTTGGTTCGCCGTGTCAAAACTACAATACCTGTC
AAGCTCTTTGCCCGTTCCACAGCTATCTCTACTGGCTCAGCCAAGATCAAGTTAAAGAGCAGTG
AGCTACAGACCATCAAAACGGAGCTGACACAGATCAAGTCCAACATTGATGCCCTTTTGGGTCG
CTTGGAGCAGATTGCTGAGGAACAGAAGGCCAATCCAGATGGCAAGAAGAAGGGTGACAGCAGC
AGTGGTGGAGGAGGGGGCAGCAGCAGTGGTGGAGGCGGCAGTGGCAATGTTGGTAGTGGCGGCA
GCGGTGGCAGTGGGAGCAGCAGCAGCCGGCCACCAGCACCCCAAGAAGACACAGCTTCTGAGGC
AGGCACACCCCAAGGAGAAGTCCAAACTCGAGATGATGGTGATGAGGAGGGACTGCTCACACAT
AGCGAGGAGGAGCTGGAGCACAGCCAGGACACAGATGCAGAAGATGGGGCCTTGCAGTAAGCAG
GAGCATTGGCCATCAGCAGAAGGGCATCACTGTCTCAGGCCTCAAGCCAGGCACCCATCTCTGG
ATGCCAGTCTAGAGAGAGTACCAGAGGAAGGCTGGCAGCAGTAACTTCTCTCCCCATTGCATCC
CAGCCAGTGAGTGCTACATCCTTTGCAAGTGGAGTTACTGGCCTACCCTTATCCCACGCACTCT
TCCTGTCTGCACTGCCTGGGCCAAGGGGCAGAAGCACTCTGCTCTTTTTTTCCCAGGACATTCC
CAGGCTTGGGGTTTTTCTATAGGTTTGAAAGTAAAGGGGGTTGTGAAGGGCGGCACGGGGGGTA
GGGAGGGCTGACAATAAAGAGATTGGATCCAAATACGCTCTGA

hide sequence

RefSeq Acc Id:

XM_039104609 ⟹ XP_038960537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,231 - 163,830,726 (+)	NCBI
mRatBN7.2	3	143,306,046 - 143,370,542 (+)	NCBI

RefSeq Acc Id:

XM_039104610 ⟹ XP_038960538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,767,025 - 163,830,726 (+)	NCBI
mRatBN7.2	3	143,306,889 - 143,370,542 (+)	NCBI

RefSeq Acc Id:

XM_039104611 ⟹ XP_038960539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,767,026 - 163,830,726 (+)	NCBI
mRatBN7.2	3	143,306,889 - 143,370,542 (+)	NCBI

RefSeq Acc Id:

XM_063283369 ⟹ XP_063139439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,425 - 163,830,726 (+)	NCBI

RefSeq Acc Id:

XM_063283370 ⟹ XP_063139440

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,431 - 163,830,726 (+)	NCBI

RefSeq Acc Id:

XM_063283371 ⟹ XP_063139441

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	163,766,190 - 163,830,726 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011958	(Get FASTA)	NCBI Sequence Viewer
	XP_008760536	(Get FASTA)	NCBI Sequence Viewer
	XP_008760537	(Get FASTA)	NCBI Sequence Viewer
	XP_008760539	(Get FASTA)	NCBI Sequence Viewer
	XP_038960537	(Get FASTA)	NCBI Sequence Viewer
	XP_038960538	(Get FASTA)	NCBI Sequence Viewer
	XP_038960539	(Get FASTA)	NCBI Sequence Viewer
	XP_063139439	(Get FASTA)	NCBI Sequence Viewer
	XP_063139440	(Get FASTA)	NCBI Sequence Viewer
	XP_063139441	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87074	(Get FASTA)	NCBI Sequence Viewer
	EDL85947	(Get FASTA)	NCBI Sequence Viewer
	EDL85948	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023429.4
	ENSRNOP00000074887
	ENSRNOP00000074887.3
	ENSRNOP00000086792
	ENSRNOP00000086792.2

RefSeq Acc Id:

NP_001011958 ⟸ NM_001011958

- UniProtKB:

Q5PQR0 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYAN
ERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYRLFDYRGRLSPVPVPRAVP
VKRPRVTVPLVRRVKTTIPVKLFARSTAISTGSAKIKLKSSELQTIKTELTQIKSNIDALLGRL
EQIAEEQKANPDGKKKGDSSSGGGGGSSSGGGGSGNVGSGGSGGSGSSSSRPPAPQEDTASEAG
TPQGEVQTRDDGDEEGLLTHSEEELEHSQDTDAEDGALQ

hide sequence

RefSeq Acc Id:	XP_008760536 ⟸ XM_008762314
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K974 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYAN ERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYSGYSFDYDYYQDYYCARLF DYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAISTGSAKIKLKSSELQTIKT ELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGDSSSGGGGGSSSGGGGSGNVGSGGSGGSGSS SSRPPAPQEDTASEAGTPQGEVQTRDDGDEEGLLTHSEEELEHSQDTDAEDGALQ hide sequence

RefSeq Acc Id:	XP_008760537 ⟸ XM_008762315
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K974 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYAN ERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYSGYSFDYDYYQDYYCARLF DYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAISTGSAKIKLKSSELQTIKT ELTQIKSNIDALLGRLEQIAEEQKANPDGKKKGDSSSGGGGGSSSGGGGSGNVGSGGSGGSGSS SSRPPAPQEDTASEAGTPQGEVQTRDDGDEEGLLTHSEEELEHSQDTDAEDGALQ hide sequence

RefSeq Acc Id:	XP_008760539 ⟸ XM_008762317
- Peptide Label:	isoform X2
- UniProtKB:	Q5PQR0 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYAN ERHARAAVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYRLFDYRGRLSPVPVPRAVP VKRPRVTVPLVRRVKTTIPVKLFARSTAISTGSAKIKLKSSELQTIKTELTQIKSNIDALLGRL EQIAEEQKANPDGKKKGDSSSGGGGGSSSGGGGSGNVGSGGSGGSGSSSSRPPAPQEDTASEAG TPQGEVQTRDDGDEEGLLTHSEEELEHSQDTDAEDGALQ hide sequence

Ensembl Acc Id:

ENSRNOP00000074887 ⟸ ENSRNOT00000080485

Ensembl Acc Id:

ENSRNOP00000023429 ⟸ ENSRNOT00000023429

RefSeq Acc Id:	XP_038960537 ⟸ XM_039104609
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K974 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960538 ⟸ XM_039104610
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K974 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960539 ⟸ XM_039104611
- Peptide Label:	isoform X2
- UniProtKB:	Q5PQR0 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000086792 ⟸ ENSRNOT00000119280

RefSeq Acc Id:	XP_063139441 ⟸ XM_063283371
- Peptide Label:	isoform X2
- UniProtKB:	Q5PQR0 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139439 ⟸ XM_063283369
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K974 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139440 ⟸ XM_063283370
- Peptide Label:	isoform X2
- UniProtKB:	Q5PQR0 (UniProtKB/TrEMBL), A0A8I6A4E6 (UniProtKB/TrEMBL)

Protein Domains

RRM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PTI6-F1-model_v2	AlphaFold	E9PTI6	1-311	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692596

Promoter ID:

EPDNEW_R3102

Type:

single initiation site

Name:

Raly_1

Description:

RALY heterogeneous nuclear ribonucleoprotein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	150,323,098 - 150,323,158	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307228	AgrOrtholog
BioCyc Gene	G2FUF-47161	BioCyc
Ensembl Genes	ENSRNOG00000017405	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000023429.5	UniProtKB/TrEMBL
	ENSRNOT00000080485	ENTREZGENE
	ENSRNOT00000080485.3	UniProtKB/TrEMBL
	ENSRNOT00000119280	ENTREZGENE
	ENSRNOT00000119280.2	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7134486	IMAGE-MGC_LOAD
InterPro	hnRNP_C_Raly	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RALY_RRM	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
	RRM_HNRPC/RALY_subfam	UniProtKB/TrEMBL
KEGG Report	rno:296301	UniProtKB/TrEMBL
MGC_CLONE	MGC:94432	IMAGE-MGC_LOAD
NCBI Gene	296301	ENTREZGENE
PANTHER	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	UniProtKB/TrEMBL
	RNA-BINDING PROTEIN RALY	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PhenoGen	Raly	PhenoGen
PIRSF	hnRNP-C_Raly	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000017405	RatGTEx
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A0G2K974	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A4E6	ENTREZGENE, UniProtKB/TrEMBL
	E9PTI6_RAT	UniProtKB/TrEMBL
	Q5PQR0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-14	Raly	RALY heterogeneous nuclear ribonucleoprotein	Raly	RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-24	Raly	RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))	Raly	hnRNP-associated with lethal yellow	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Raly	hnRNP-associated with lethal yellow	Raly_predicted	hnRNP-associated with lethal yellow (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Raly_predicted	hnRNP-associated with lethal yellow (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD