Dpt (dermatopontin) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Dpt (dermatopontin) Rattus norvegicus
Analyze
Symbol: Dpt
Name: dermatopontin
RGD ID: 1307176
Description: Predicted to be involved in collagen fibril organization. Predicted to act upstream of or within negative regulation of cell population proliferation. Predicted to be located in extracellular region. Orthologous to human DPT (dermatopontin); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81379,656,341 - 79,684,759 (+)NCBIGRCr8
mRatBN7.21377,123,224 - 77,151,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1377,123,115 - 77,151,639 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1379,732,107 - 79,760,519 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01381,036,109 - 81,064,519 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01378,287,025 - 78,315,359 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01383,073,307 - 83,102,404 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1383,073,544 - 83,102,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01387,954,222 - 87,983,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41380,562,890 - 80,591,361 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11380,577,137 - 80,605,551 (+)NCBI
Celera1376,840,691 - 76,869,164 (+)NCBICelera
Cytogenetic Map13q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (EXP)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
cantharidin  (ISO)
CGP 52608  (ISO)
clofibric acid  (EXP)
corticosterone  (EXP)
dexamethasone  (ISO)
dibenzofurans  (ISO)
dibromoacetic acid  (EXP)
dioxygen  (ISO)
diquat  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
entinostat  (ISO)
ethylbenzene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
folpet  (ISO)
fructose  (EXP)
furan  (EXP)
gentamycin  (EXP)
Indeno[1,2,3-cd]pyrene  (ISO)
indometacin  (ISO)
inulin  (ISO)
lead diacetate  (EXP)
methapyrilene  (EXP,ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
nickel atom  (ISO)
ozone  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylephrine  (EXP)
pioglitazone  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
rotenone  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
testosterone enanthate  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
toluene  (ISO)
tributylstannane  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
XL147  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12230512   PMID:12395208   PMID:12477932   PMID:14980498   PMID:16877395   PMID:20551380   PMID:23262218   PMID:23376485   PMID:24006456   PMID:27068509   PMID:27559042  


Genomics

Comparative Map Data
Dpt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81379,656,341 - 79,684,759 (+)NCBIGRCr8
mRatBN7.21377,123,224 - 77,151,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1377,123,115 - 77,151,639 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1379,732,107 - 79,760,519 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01381,036,109 - 81,064,519 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01378,287,025 - 78,315,359 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01383,073,307 - 83,102,404 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1383,073,544 - 83,102,401 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01387,954,222 - 87,983,319 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41380,562,890 - 80,591,361 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11380,577,137 - 80,605,551 (+)NCBI
Celera1376,840,691 - 76,869,164 (+)NCBICelera
Cytogenetic Map13q23NCBI
DPT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,695,468 - 168,729,206 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,695,468 - 168,729,206 (-)EnsemblGRCh38hg38GRCh38
GRCh371168,664,706 - 168,698,444 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361166,931,330 - 166,965,052 (-)NCBINCBI36Build 36hg18NCBI36
Build 341165,396,364 - 165,430,086NCBI
Celera1141,774,485 - 141,808,228 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1139,910,794 - 139,944,541 (-)NCBIHuRef
CHM1_11170,086,722 - 170,120,451 (-)NCBICHM1_1
T2T-CHM13v2.01168,050,592 - 168,084,377 (-)NCBIT2T-CHM13v2.0
Dpt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391164,624,232 - 164,651,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1164,624,213 - 164,651,835 (+)EnsemblGRCm39 Ensembl
GRCm381164,796,663 - 164,824,274 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,796,644 - 164,824,266 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,726,863 - 166,754,397 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361166,633,407 - 166,660,941 (+)NCBIMGSCv36mm8
Celera1167,227,731 - 167,255,812 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map172.12NCBI
Dpt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554628,451,112 - 8,480,827 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554628,451,159 - 8,480,085 (+)NCBIChiLan1.0ChiLan1.0
DPT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2180,662,672 - 81,069,860 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1180,331,075 - 80,738,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01144,182,053 - 144,218,632 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11147,904,343 - 147,938,224 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1147,904,337 - 147,938,208 (-)Ensemblpanpan1.1panPan2
DPT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1729,830,415 - 29,855,479 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl729,830,415 - 29,857,061 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha729,361,634 - 29,386,699 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0729,647,765 - 29,672,841 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl729,647,765 - 29,672,841 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1729,481,238 - 29,506,287 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0729,516,851 - 29,541,912 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0729,754,845 - 29,779,925 (+)NCBIUU_Cfam_GSD_1.0
Dpt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934499,876,357 - 99,900,968 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648117,722,977 - 17,747,718 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648117,723,108 - 17,747,712 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DPT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl482,287,730 - 82,319,366 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1482,287,657 - 82,319,380 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2489,969,400 - 90,001,110 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DPT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12560,295,900 - 60,329,678 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2560,295,709 - 60,349,682 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605561,979,608 - 62,013,288 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dpt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248266,627,947 - 6,656,151 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248266,628,059 - 6,656,064 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dpt
386 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:130
Interacting mature miRNAs:140
Transcripts:ENSRNOT00000066119
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
738026Lnnr5Liver neoplastic nodule remodeling QTL 53.29liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)135987440885581182Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655945Rf61Renal function QTL 613.6blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)136906051986800898Rat
1331783Bp221Blood pressure QTL 2213.72886arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)136906051986800898Rat
1300166Kidm6Kidney mass QTL 63.93kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)136906051986800898Rat
11530006Niddm72Non-insulin dependent diabetes mellitus QTL 720.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)137402391880753406Rat
8655959Pur32Proteinuria QTL 328.4urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
738027Lnnr6Liver neoplastic nodule remodeling QTL 63.3liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)137486211785581182Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat

Markers in Region
D13Got56  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21377,127,858 - 77,128,138 (+)MAPPERmRatBN7.2
Rnor_6.01383,078,240 - 83,078,519NCBIRnor6.0
Rnor_5.01387,959,155 - 87,959,434UniSTSRnor5.0
RGSC_v3.41380,567,585 - 80,567,865RGDRGSC3.4
RGSC_v3.41380,567,586 - 80,567,865UniSTSRGSC3.4
RGSC_v3.11380,581,773 - 80,582,053RGD
Celera1376,845,387 - 76,845,666UniSTS
RH 2.0 Map13573.3RGD
Cytogenetic Map13q23UniSTS
RH133042  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21377,145,892 - 77,146,111 (+)MAPPERmRatBN7.2
Rnor_6.01383,096,270 - 83,096,488NCBIRnor6.0
Rnor_5.01387,977,185 - 87,977,403UniSTSRnor5.0
RGSC_v3.41380,585,616 - 80,585,834UniSTSRGSC3.4
Celera1376,863,417 - 76,863,635UniSTS
RH 3.4 Map13485.8UniSTS
Cytogenetic Map13q23UniSTS
RH142338  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21377,150,561 - 77,150,749 (+)MAPPERmRatBN7.2
Rnor_6.01383,100,939 - 83,101,126NCBIRnor6.0
Rnor_5.01387,981,854 - 87,982,041UniSTSRnor5.0
RGSC_v3.41380,590,285 - 80,590,472UniSTSRGSC3.4
Celera1376,868,086 - 76,868,275UniSTS
RH 3.4 Map13487.8UniSTS
Cytogenetic Map13q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 31 39 23 19 23 8 11 21 29 11 8
Low 6 18 18 18 21 12 8
Below cutoff 6 21 2 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000066119   ⟹   ENSRNOP00000061146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1377,123,163 - 77,151,638 (+)Ensembl
Rnor_6.0 Ensembl1383,073,544 - 83,102,396 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000075996   ⟹   ENSRNOP00000068380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1383,073,866 - 83,101,177 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000077070   ⟹   ENSRNOP00000068106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1377,123,168 - 77,151,639 (+)Ensembl
Rnor_6.0 Ensembl1383,073,550 - 83,102,401 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079796   ⟹   ENSRNOP00000069812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1377,123,115 - 77,151,639 (+)Ensembl
Rnor_6.0 Ensembl1383,073,549 - 83,102,397 (+)Ensembl
RefSeq Acc Id: NM_001401366   ⟹   NP_001388295
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81379,656,341 - 79,684,759 (+)NCBI
mRatBN7.21377,123,224 - 77,151,646 (+)NCBI
RefSeq Acc Id: NM_001401367   ⟹   NP_001388296
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81379,656,341 - 79,684,759 (+)NCBI
mRatBN7.21377,123,224 - 77,151,646 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000069812   ⟸   ENSRNOT00000079796
RefSeq Acc Id: ENSRNOP00000068106   ⟸   ENSRNOT00000077070
RefSeq Acc Id: ENSRNOP00000068380   ⟸   ENSRNOT00000075996
RefSeq Acc Id: ENSRNOP00000061146   ⟸   ENSRNOT00000066119
RefSeq Acc Id: NP_001388295   ⟸   NM_001401366
- Peptide Label: isoform 1 precursor
- UniProtKB: B2RZ77 (UniProtKB/TrEMBL),   A0A096MJF1 (UniProtKB/TrEMBL),   A6IDF2 (UniProtKB/TrEMBL),   D4A9H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001388296   ⟸   NM_001401367
- Peptide Label: isoform 2 precursor
- UniProtKB: A6IDF3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RZ77-F1-model_v2 AlphaFold B2RZ77 1-202 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698968
Promoter ID:EPDNEW_R9483
Type:multiple initiation site
Name:Dpt_1
Description:dermatopontin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01383,073,605 - 83,073,665EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307176 AgrOrtholog
BioCyc Gene G2FUF-17589 BioCyc
Ensembl Genes ENSRNOG00000002947 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066119.5 UniProtKB/TrEMBL
  ENSRNOT00000077070 ENTREZGENE
  ENSRNOT00000077070.3 UniProtKB/TrEMBL
  ENSRNOT00000079796.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7113939 IMAGE-MGC_LOAD
InterPro Dermatopontin_fam UniProtKB/TrEMBL
KEGG Report rno:289178 UniProtKB/TrEMBL
MGC_CLONE MGC:189353 IMAGE-MGC_LOAD
NCBI Gene 289178 ENTREZGENE
PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  DERMATOPONTIN UniProtKB/TrEMBL
  PTHR15040 UniProtKB/TrEMBL
Pfam DERM UniProtKB/TrEMBL
PhenoGen Dpt PhenoGen
RatGTEx ENSRNOG00000002947 RatGTEx
UniProt A0A096MJF1 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JWB3_RAT UniProtKB/TrEMBL
  A6IDF2 ENTREZGENE, UniProtKB/TrEMBL
  A6IDF3 ENTREZGENE, UniProtKB/TrEMBL
  B2RZ77 ENTREZGENE, UniProtKB/TrEMBL
  D4A9H2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Dpt  dermatopontin   Dpt_predicted  dermatopontin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dpt_predicted  dermatopontin (predicted)      Symbol and Name status set to approved 70820 APPROVED