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Gene: Prtg (protogenin) Rattus norvegicus

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Symbol:

Prtg

Name:

protogenin

RGD ID:

1307157

Description:

Predicted to enable identical protein binding activity and signaling receptor activity. Predicted to be involved in cell-cell adhesion. Predicted to act upstream of or within negative regulation of neurogenesis. Predicted to be located in plasma membrane. Orthologous to human PRTG (protogenin); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC315806; protogenin A; protogenin homolog (Gallus gallus); RGD1307157; Shen-Dan; similar to DDM36

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRTG (protogenin)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Prtg (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prtg (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRTG (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRTG (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prtg (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRTG (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRTG (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prtg (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Prtg (protogenin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PRTG (protogenin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Prtg (protogenin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prtga (protogenin homolog a (Gallus gallus))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prtga (protogenin homolog a (Gallus gallus))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prtgb (protogenin homolog b (Gallus gallus))	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	prtg	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	82,429,106 - 82,538,612 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	82,429,132 - 82,538,602 (+)	Ensembl				GRCr8
mRatBN7.2	8	73,548,440 - 73,657,945 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	73,548,466 - 73,653,259 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	79,071,444 - 79,180,920 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	77,344,045 - 77,453,529 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	75,181,421 - 75,290,895 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	79,489,790 - 79,593,806 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	79,489,790 - 79,593,806 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	73,495,451 - 73,599,817 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	77,436,316 - 77,647,000 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	68,099,554 - 68,204,100 (-)	NCBI		Celera
RGSC_v3.1	8	77,455,496 - 77,664,364 (+)	NCBI
Cytogenetic Map	8	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,4'-trichlorobiphenyl (ISO)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

CGP 52608 (ISO)

choline (ISO)

cobalt dichloride (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

L-methionine (ISO)

lead(0) (ISO)

leflunomide (ISO)

linezolid (EXP)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

nickel sulfate (ISO)

PCB138 (ISO)

perfluorooctanoic acid (ISO)

potassium dichromate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

Tributyltin oxide (ISO)

trichostatin A (ISO)

trimellitic anhydride (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell-cell adhesion (IBA)

negative regulation of neurogenesis (IEA,ISO)

Cellular Component

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

identical protein binding (IEA,ISO)

protein binding (ISO)

signaling receptor activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:20335479	PMID:22664934

Genomics

Comparative Map Data

Prtg
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	82,429,106 - 82,538,612 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	82,429,132 - 82,538,602 (+)	Ensembl				GRCr8
mRatBN7.2	8	73,548,440 - 73,657,945 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	73,548,466 - 73,653,259 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	79,071,444 - 79,180,920 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	77,344,045 - 77,453,529 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	75,181,421 - 75,290,895 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	79,489,790 - 79,593,806 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	79,489,790 - 79,593,806 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	73,495,451 - 73,599,817 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	77,436,316 - 77,647,000 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	68,099,554 - 68,204,100 (-)	NCBI		Celera
RGSC_v3.1	8	77,455,496 - 77,664,364 (+)	NCBI
Cytogenetic Map	8	q24	NCBI

PRTG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	55,611,544 - 55,743,152 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	55,611,544 - 55,743,152 (-)	Ensembl			hg38	GRCh38
GRCh37	15	55,903,742 - 56,035,350 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	53,698,888 - 53,822,469 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	15	32,792,252 - 32,923,660 (-)	NCBI		Celera
Cytogenetic Map	15	q21.3	NCBI
HuRef	15	32,727,835 - 32,859,309 (-)	NCBI		HuRef
CHM1_1	15	56,022,163 - 56,153,561 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	53,414,697 - 53,546,336 (-)	NCBI		T2T-CHM13v2.0

Prtg
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	72,714,556 - 72,824,589 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	72,714,156 - 72,824,573 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	72,807,274 - 72,917,307 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	72,806,874 - 72,917,291 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	72,655,081 - 72,765,114 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	72,605,780 - 72,712,159 (+)	NCBI		MGSCv36	mm8
Celera	9	69,997,101 - 70,103,080 (+)	NCBI		Celera
Cytogenetic Map	9	D	NCBI
cM Map	9	40.08	NCBI

Prtg
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955409	309,885 - 405,667 (+)	Ensembl
ChiLan1.0	NW_004955409	309,885 - 405,667 (+)	NCBI	ChiLan1.0	ChiLan1.0

PRTG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	44,869,162 - 45,010,450 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	49,052,507 - 49,191,895 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	34,579,267 - 34,715,039 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	52,902,076 - 53,032,568 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	52,910,486 - 53,032,562 (-)	Ensembl			panPan2	panpan1.1

PRTG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	20,942,070 - 21,064,484 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	20,946,976 - 21,063,308 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	20,902,207 - 21,028,604 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	21,087,767 - 21,215,029 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	30	21,096,908 - 21,215,226 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	30	21,030,872 - 21,158,776 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	21,114,849 - 21,241,807 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	21,247,160 - 21,374,539 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Prtg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	99,220,356 - 99,340,881 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	17,069,230 - 17,188,733 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	17,068,125 - 17,188,783 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRTG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	116,132,165 - 116,268,631 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	116,132,269 - 116,275,678 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	128,621,247 - 128,766,118 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRTG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	27,735,883 - 27,854,530 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	113,415,151 - 113,551,542 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prtg
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624731	6,007,187 - 6,101,312 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624731	6,005,323 - 6,109,553 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Prtg
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	67,155,702 - 67,257,725 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Prtg
1295 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	763
Count of miRNA genes:	277
Interacting mature miRNAs:	356
Transcripts:	ENSRNOT00000034288
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	50763951	95763951	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	51589699	99045312	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
4889938	Bss89	Bone structure and strength QTL 89	3.8		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	8	58991697	91341052	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	63404444	108404444	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
1331769	Rf39	Renal function QTL 39	3.871		urine output (VT:0003620)	timed urine volume (CMO:0000260)	8	50763951	107970527	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	49610204	94610204	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
5684973	Bss100	Bone structure and strength QTL 100	4.7		tibia area (VT:1000281)	tibia area measurement (CMO:0001382)	8	58991697	91341052	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	63141536	109261840	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	62848139	107848139	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	58337123	103337123	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	62848139	107848139	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	62970527	107970527	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	62848139	107848139	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	62848139	107848139	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	62848139	107848139	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	62848139	107848139	Rat
71120	Niddm21	Non-insulin dependent diabetes mellitus QTL 21	3.73		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	8	66992095	111992095	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	60248093	105248093	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313086	Bss60	Bone structure and strength QTL 60	4.1	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	8	58991697	91341052	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	62848139	107848139	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	55428416	107963099	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	62963099	107963099	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	62982864	107982864	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	62848139	107848139	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat

Markers in Region

RH143498

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	73,590,011 - 73,590,155 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	79,531,442 - 79,531,585	NCBI	Rnor6.0
Rnor_5.0	8	73,557,982 - 73,558,125	UniSTS	Rnor5.0
RGSC_v3.4	8	77,479,058 - 77,479,201	UniSTS	RGSC3.4
Celera	8	68,162,570 - 68,162,713	UniSTS
Cytogenetic Map	8	q24	UniSTS

RH138453

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	73,590,007 - 73,590,141 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	79,531,438 - 79,531,571	NCBI	Rnor6.0
Rnor_5.0	8	73,557,996 - 73,558,129	UniSTS	Rnor5.0
RGSC_v3.4	8	77,479,054 - 77,479,187	UniSTS	RGSC3.4
Celera	8	68,162,584 - 68,162,717	UniSTS
Cytogenetic Map	8	q24	UniSTS

BF390444

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	73,605,956 - 73,606,163 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	79,547,485 - 79,547,691	NCBI	Rnor6.0
Rnor_5.0	8	73,541,876 - 73,542,082	UniSTS	Rnor5.0
RGSC_v3.4	8	77,495,036 - 77,495,242	UniSTS	RGSC3.4
Celera	8	68,146,574 - 68,146,780	UniSTS
Cytogenetic Map	8	q24	UniSTS

Prtg

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	8	82,532,093 - 82,532,971 (+)	Marker Load Pipeline
mRatBN7.2	8	73,651,436 - 73,652,314 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	79,591,984 - 79,592,861	NCBI	Rnor6.0
Rnor_5.0	8	73,496,396 - 73,497,269	UniSTS	Rnor5.0
RGSC_v3.4	8	77,645,178 - 77,646,055	UniSTS	RGSC3.4
Celera	8	68,100,499 - 68,101,377	UniSTS
Cytogenetic Map	8	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	10	48	152	86	87	59	21	59	6	230	94	10	133	59	92	28	15	15

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037651	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC141190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY630256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000091722 ⟹ ENSRNOP00000071092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	82,429,132 - 82,538,602 (+)	Ensembl
mRatBN7.2 Ensembl	8	73,548,466 - 73,653,259 (+)	Ensembl
Rnor_6.0 Ensembl	8	79,489,790 - 79,593,806 (+)	Ensembl

RefSeq Acc Id:

NM_001037651 ⟹ NP_001032740

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,429,132 - 82,538,602 (+)	NCBI
mRatBN7.2	8	73,548,466 - 73,657,945 (+)	NCBI
Rnor_6.0	8	79,489,790 - 79,593,806 (+)	NCBI
Rnor_5.0	8	73,495,451 - 73,599,817 (-)	NCBI
RGSC_v3.4	8	77,436,316 - 77,647,000 (+)	RGD
Celera	8	68,099,554 - 68,204,100 (-)	RGD

Sequence:

show sequence

ATAGATCTGCAGCACTCCTGGAACAGCCCGGGAGCATGCCCGCGCAGCCCCGCTGAATGGCGCC
TCCCGTGCGCCCGGGGATGCTGCCCCTGCTGCTGTTGCTGCTACTGCCGCCGCTCGGCTCGGTT
CCAGGAGTGTGGAGCTTTAGCGAACTGTTCTTCATGAAAGAACCACAGGACGCAACGGTCACAA
GGAAAGACCCAGTCTTCTTAGATTGCCAGGCCCATGGAGAAGGTCCCATTAAGGTCACCTGGTT
GAAAAATGGAGCAAAATTGTCTGAAAATAAACGGATCCAGGTTCTATCTAACGGCTCTTTATAC
ATCAGTGAGGCGGAAGGCAGGCGGGGAGAGCAATCGGATGAAGGATTTTATCAGTGCTTGGCTG
TAAACAAATATGGGGCCATTCTTAGTCAGAAAGCTCATCTGACATTGTCAACCATCTCTGCGTT
CGAGGTCCATCCAGTGTCTACCGAAGTCCCCGAAGGGGGAGTTGCTAGATTTTCATGCAAGATT
TCATCAACGCCCCCTGCGGTCATAACATGGGAATTTAATAGGACAGCCCTGCCTATGACCATGG
ACAGCAGGGTGACTGCCCTGCCCTCAGGAGTGCTGCAGATCTATGACGCTGGCCCGGAGGATGC
TGGGAAATACCGCTGTGTTGCAGCCACGCATGCTCATAAGCGTAAAAGCATGGAGGCCTCGCTA
ACCATAGTTCCAGCTAATGAGACCAGATCCTTCTACATGCCCACCATTATAGCCAGTCCACAGA
ATGTAACCGCGTCTCTACATCAGACAGTTGTGCTAGAGTGTATGGCTACAGGATATCCCAAGCC
CATCATTTCCTGGAGCCGTCTTGATCACAAGTCCATTGATGTCTTCAATACTCGGGTACTCGGA
AATGGCAATCTCATCATATCAGATGTCAAGCTTCAGCATGCTGGAGTGTATGTTTGTCGGGCCA
CCACCCCAGGCACTCGCAACTTCACAGTTGCTATGGCAACGTTAACTGTATTAGCTCCTCCTTC
ATTTGTGGAATGGCCTGAAAGTTTAACAAGGCCACGAGCTGGCACTGCACGGTTTGTGTGTCAA
GCAGAAGGAATTCCCTCACCCAAAATGTCCTGGTTGAAAAATGGGAGAAGGATACATTCAAATG
GCAGGATTAAAATGTACAACAGCAAATTGGTCATTAACCAGATTATCCCAGAAGATGATGCTAT
CTATCAGTGCATGGCTGAAAACAGCCAAGGATCTGTTCTGTCTCGAGCCAGACTGACTGTGGTG
ATGTCGGAAGATAGACCCAGCGCTCCTTACAACGTTCATGCCGAAACCATGTCGAGCTCTGCTA
TCCTTCTAGCATGGGAGCGACCACTGTACAATTCAGACAAGGTCATTGCCTACTCTGTACACTA
CATGAAGGCTGAAGGTCTAAATAACGAGGAATATCAGGTGGTCCTTGGAAATGACACAACTCAT
TATATCATCGATGACTTGGAACCAGACAGCAACTATACTTTCTACATCGTGGCGTACATGCCCA
TGGGAGCCAGCCAGATGTCGGATCATGTGACACAGAACACGCTAGAAGACGTGCCCCTAAGGCC
TCCCGAAATTAGCTTGACGAGTCGAAGTCCCACCGACATTCTCATCTCCTGGCTGCCCATCCCG
GCCAAGTACCGACGGGGCCAAGTGGTGCTGTACCGGCTGTCCTTCCGCCTGAGCACTGAGAATT
CCATCCAAGTTGTAGAACTCCCGGGGACTGTGCACGAGTACCTTCTGGAAGGCCTGGAGCCAGA
CAGTGTCTATCTGGTCCGGATTACTGCTGCTACCCGAGTGGGGCTGGGAGAGTCATCGGTGTGG
ACGTCACACAGGACGCCCAAAGCCACGAGCGTGAAAGCCCCTAAGTCTCCTGAACTGCATTTGG
AGCCACTGAATTGTACTACCATCTCTGTAAGGTGGCTTCAAGACACCGAGGACCCGGCTGCCAT
TCGGGGCTACAAGCTGTTTTATAAAGAAGAAGGGCAGCAGGAACATGGACCGATCTTCCTGGAC
ACCGGTGACCTGCTGTATACGCTCAGTGGCTTGGACCCCAGAAGAAAATACCATGTGAGGCTAC
TGGCTTACAACAATCTGGAAGATGGCTACCAGGCCGACCAGACCGTCAGTACTCCCGGATGCGT
GTCTGTCCGTGACCGCATGGTCCCTCCGCCACCGCCACCCCACCATCTGTACGCGAAGGCTAAT
ACCTCCTCTTCTATCTTCCTGCACTGGAGGAGGCCTGCGTTCACCACCGCCCAAGTCATTAACT
ACACCATCCGCTGTAACCCCGTTGGCCTGCAGAACGCCTCTCTGGTTCTCTACCTGCAAACATC
AGAAACCCACATGCTGGTTCAAGGACTAGAGCCAAACACCAAGTATGAGTTCGCTGTCCGACTG
CACGTGGATCAGCTCTCCAGTCCCTGGAGTCCCGTGGTCTACCACACCACACTGCCGGAAGCAC
CCACAGGCCCCCCAGTGGGGGTGAAGGTGACGCTGATAGAAGATGACACTGCCCTTGTCTCTTG
GAAACCCCCAGATGGCCCAGAGACAGTGGTGACGCGCTACACCATCTTGTATGCGTCCAGGAAG
GCCTGGATCGCCGGCGAGTGGCAGGTCCTACATCGAGAAGGGGCAATAACCATGGCTCTGCTGG
AAAACCTGGTGGCAGGAAACGTGTACATTGTCAAGATCTCAGCCTCCAACGAGGTGGGAGAAGG
GCCCTTCCCAAATTCCGTGGAGCTGGCCGTCCTCCCCAAGGACGCTTCAGAATCGAACCAGAGG
CCTAAGCGTTTGGATTCTTCTGATGCCAAAGTTTATTCAGGCTATTACCACCTGGACCAAAAGT
CAATGACCGGCATTGCAGTAGGCGTTGGCATAGCCTTGACCTGTATCCTCATCTGTGTTCTCAT
CTTGATATACCGAAGCAAAGCCAGGAAGTCATCCGCCTCTAAGACAACGCAGAGTGGAACCCAG
CCGTTATCCCGAGCCAGTGCCTCTGTAGCAGCGGGGAGTGACATGGGGAAGAACCTGGAGAGAG
CTACAGAAAACGAAGAGTCCTCAGTACCCATGATGCCAAGCTGCTTCATTGATGCGAAGGGAGG
GACTGACCTGATCATCAATAGCTATGGTCCTATTATTAAAAACAACCCTAAGAAAAAGTGGCGT
TTTTTCCAAGACACTAAGAAGATCAAAGTTGAACAGACTCAAAGAAGAATTACTCAGACCGTGT
GCTTTTACCAGCCAGGCACCACAGTGCTGATCAGCGATGAAGACTCCCCTAGCTCCCCAGGCCA
GACCACCAGCTTCCCAAGACCTTTTGGGCCCACCACCCTGGACACTGAGCACTCAGCAAACAGT
GAAGGCAGCCACGAGACAGGGGATTCTGGAAGGTTTTCCCATGAGTCCAATGATGAGATACATC
TGTCCTCTGTCATCAGCAGCACACCCCCCACCTCGAATTCCCTCACCTGTGGTGATTCTGATGG
GGATGCTGCACCGAAGAAGCATGGAGACCCTGCCCAGCCCTTGCCAGCTGAGCAGACCTCAGCC
CCACAGCCAACACCTGCTGGGCTGCGACATGCTGCCGAGAGTGTTCCCGTCTAGATAGCCATGC
TCAGGTATTCACAGCAAGCATCTGTTCCAAGGACAATGAACAGGGAGCCAAAGCCTTTTGTGAA
AATCTTGACGTCTTACTGTTTGTTGTTTGTTTTTTGTTTTTGTTTTTTTATCTTTTTTAAAAGA
TTTTTTTAATTATTTTTAAGCTCACGAATTTTGAATGTTTCAATTGTCAACAATGTGAAAAAGG
GCAGTCAAGATGCTTGACTAGACTTTAAAGATTGATCACTGGAGCGGAGGGAAGACTGCCTGAG
CCCTCTGCTGAATAGCTACCTCAGTTTGCTGTTGGCGGACTCTGAAGACAACGGTGCTGCCTCC
TTCGTGTACGAGTGCCGGTTTCTCTCAGTGGCATAACCAGCGGGACTTCCTAGTGACGCTGTGT
GTCCATTGTGCGTGTGTGGTGTGTGTGTGTGACTGAAGGAGTCCGATAGGTGGAAGAGGAAGAA
CGTTGATCTGAAGCTCTGATTTTTTTTTTTTTTTTTAAAGAACCATGACACCTGCGTGATTGGA
TAATGTAACACCTCTGGCTGTCTGTGAGGAGAAAATATGGGAGTGTATTTATTTGAATGGATGA
AACAAATACATCTCTTTGGAGAAGAGACCCATTCCGGAGTACGTAGGGATCATGTCCTTGCAAA
GCTGTTGGGTTTTGGGAACCAGAGCAGGAGAATTTCGCTCCAGCCTGCACCCTCCTGCCCTCAG
CCTGCAAAAGCCACCTTTCCCGTTGCTCCACGGCGAGCCAAGGGCTGCGCTGTCTCTTGTGAAG
TACCACAGAGTTTCCAGAGTTAGCTGCAAAACACAGTGGTGGAAAGTGGATTTTATTTTTTTAA
TGGTTCAGATTTTCGTTTTTAAAATCTTAGTTCGGCTTCAAATGGGGCAAAGAAATGTTATTAA
ATATTAAGAATGAACGGAACCGTAGAGAGTAAGACAAACTTGAGGTTTTCGTGATAGCAGTGCC
TTCTGATATATATTATGAAAAATTTTGCCTTATACCTTTTTAATATTCACGAAGATGTTTAGGA
AAAAAAGTACCAAAAATTTGCCTTAAGGAAACGGCTTGGATCTTACTGATAGCTGGTTTGCTAC
CTGGCACCTTGCTGGAGTTGTTCTTTTTGAAGCGCAGGTTTGTCCCCCACCACCCTAGTGGCTG
AGCTCTTGGCTTTGTACCCCACTAACAGCAGAATTGAGTTCATCCCTTTGTCTACTGTGAAATC
AGCAAATTGTTTACTCCTCTGTAGAGCAGGCCTTCTCTGTCACAAGGCAGCACGCTAGGTGTGG
AGCCACGTGGGAGGGACAAAGACTGAGCTGTGAGAAGAGACAAGTCCTTAACCTTTTAAAATCG
TGGGTTTTGCCTTCCCCCCAATTTTTTAGAAATGGCTTTTGAATTGCGTTTGAAAAGAAGAACC
CTCCATGGGTTTTCCCTTGAAACCAGCCCCTCCATGCACAGACAAGGCAGGTCCTGCCAAATGG
TGTTCTAAAGTCGAGGGAATTCCGATACATGATCACCCCATGTCATCTATTGTGATGGCCTGAC
ACTGCCACAGTTTTCATCGTGATTCTAAGTTTTGTGCCAAATTGGACTTGCTTGGAAGCCGACC
GACCGGATGTGCCAGGCGCCACTCCTCAGCACAGTCCTTTACCGTGGGCTTCTCGGTAAAATGG
GGAGAAAAGAAGAA

hide sequence

RefSeq Acc Id:

XM_039081517 ⟹ XP_038937445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,429,106 - 82,538,612 (+)	NCBI
mRatBN7.2	8	73,548,440 - 73,657,945 (+)	NCBI

RefSeq Acc Id:

XM_039081518 ⟹ XP_038937446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,430,766 - 82,538,612 (+)	NCBI
mRatBN7.2	8	73,549,272 - 73,657,945 (+)	NCBI

RefSeq Acc Id:

XM_039081519 ⟹ XP_038937447

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,455,511 - 82,538,612 (+)	NCBI
mRatBN7.2	8	73,580,458 - 73,657,945 (+)	NCBI

RefSeq Acc Id:

XM_063265548 ⟹ XP_063121618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,455,511 - 82,538,612 (+)	NCBI

RefSeq Acc Id:

XR_010053966

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	82,429,106 - 82,514,919 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001032740	(Get FASTA)	NCBI Sequence Viewer
	XP_038937445	(Get FASTA)	NCBI Sequence Viewer
	XP_038937446	(Get FASTA)	NCBI Sequence Viewer
	XP_038937447	(Get FASTA)	NCBI Sequence Viewer
	XP_063121618	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAU05739	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071092
GenBank Protein	Q2VWP9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001032740 ⟸ NM_001037651
- Peptide Label:	precursor
- UniProtKB:	Q2VWP9 (UniProtKB/Swiss-Prot), F1LNL1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPPVRPGMLPLLLLLLLPPLGSVPGVWSFSELFFMKEPQDATVTRKDPVFLDCQAHGEGPIKV TWLKNGAKLSENKRIQVLSNGSLYISEAEGRRGEQSDEGFYQCLAVNKYGAILSQKAHLTLSTI SAFEVHPVSTEVPEGGVARFSCKISSTPPAVITWEFNRTALPMTMDSRVTALPSGVLQIYDAGP EDAGKYRCVAATHAHKRKSMEASLTIVPANETRSFYMPTIIASPQNVTASLHQTVVLECMATGY PKPIISWSRLDHKSIDVFNTRVLGNGNLIISDVKLQHAGVYVCRATTPGTRNFTVAMATLTVLA PPSFVEWPESLTRPRAGTARFVCQAEGIPSPKMSWLKNGRRIHSNGRIKMYNSKLVINQIIPED DAIYQCMAENSQGSVLSRARLTVVMSEDRPSAPYNVHAETMSSSAILLAWERPLYNSDKVIAYS VHYMKAEGLNNEEYQVVLGNDTTHYIIDDLEPDSNYTFYIVAYMPMGASQMSDHVTQNTLEDVP LRPPEISLTSRSPTDILISWLPIPAKYRRGQVVLYRLSFRLSTENSIQVVELPGTVHEYLLEGL EPDSVYLVRITAATRVGLGESSVWTSHRTPKATSVKAPKSPELHLEPLNCTTISVRWLQDTEDP AAIRGYKLFYKEEGQQEHGPIFLDTGDLLYTLSGLDPRRKYHVRLLAYNNLEDGYQADQTVSTP GCVSVRDRMVPPPPPPHHLYAKANTSSSIFLHWRRPAFTTAQVINYTIRCNPVGLQNASLVLYL QTSETHMLVQGLEPNTKYEFAVRLHVDQLSSPWSPVVYHTTLPEAPTGPPVGVKVTLIEDDTAL VSWKPPDGPETVVTRYTILYASRKAWIAGEWQVLHREGAITMALLENLVAGNVYIVKISASNEV GEGPFPNSVELAVLPKDASESNQRPKRLDSSDAKVYSGYYHLDQKSMTGIAVGVGIALTCILIC VLILIYRSKARKSSASKTTQSGTQPLSRASASVAAGSDMGKNLERATENEESSVPMMPSCFIDA KGGTDLIINSYGPIIKNNPKKKWRFFQDTKKIKVEQTQRRITQTVCFYQPGTTVLISDEDSPSS PGQTTSFPRPFGPTTLDTEHSANSEGSHETGDSGRFSHESNDEIHLSSVISSTPPTSNSLTCGD SDGDAAPKKHGDPAQPLPAEQTSAPQPTPAGLRHAAESVPV hide sequence

Ensembl Acc Id:

ENSRNOP00000071092 ⟸ ENSRNOT00000091722

RefSeq Acc Id:	XP_038937445 ⟸ XM_039081517
- Peptide Label:	isoform X1
- UniProtKB:	Q2VWP9 (UniProtKB/Swiss-Prot), A6KEM4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937446 ⟸ XM_039081518
- Peptide Label:	isoform X2
- UniProtKB:	Q2VWP9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_038937447 ⟸ XM_039081519
- Peptide Label:	isoform X3
- UniProtKB:	Q2VWP9 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063121618 ⟸ XM_063265548
- Peptide Label:	isoform X4
- UniProtKB:	Q2VWP9 (UniProtKB/Swiss-Prot)

Protein Domains

Fibronectin type-III Ig-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q2VWP9-F1-model_v2	AlphaFold	Q2VWP9	1-1193	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307157	AgrOrtholog
BioCyc Gene	G2FUF-29869	BioCyc
Ensembl Genes	ENSRNOG00000055251	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000091722	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
InterPro	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
KEGG Report	rno:315806	UniProtKB/Swiss-Prot
NCBI Gene	315806	ENTREZGENE
PANTHER	PROTEIN SIDEKICK	UniProtKB/Swiss-Prot
	PROTOGENIN	UniProtKB/Swiss-Prot
Pfam	fn3	UniProtKB/Swiss-Prot
	I-set	UniProtKB/Swiss-Prot
	Ig_3	UniProtKB/Swiss-Prot
PhenoGen	Prtg	PhenoGen
PROSITE	FN3	UniProtKB/Swiss-Prot
	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000055251	RatGTEx
SMART	FN3	UniProtKB/Swiss-Prot
	IGc2	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
UniProt	A6KEM4	ENTREZGENE, UniProtKB/TrEMBL
	F1LNL1	ENTREZGENE, UniProtKB/TrEMBL
	PRTG_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-02	Prtg	protogenin	Prtg	protogenin homolog (Gallus gallus)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Prtg	protogenin homolog (Gallus gallus)	RGD1307157	similar to DDM36	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1307157	similar to DDM36	RGD1307157_predicted	similar to DDM36 (predicted)	Symbol and Name status set to approved	1299863	APPROVED
2005-01-20	RGD1307157_predicted	similar to DDM36 (predicted)	LOC315806_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC315806_predicted	similar to DDM36 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD