Advanced Search (OLGA)

Gene: Slco5a1 (solute carrier organic anion transporter family, member 5A1) Rattus norvegicus

Analyze

Symbol:

Slco5a1

Name:

solute carrier organic anion transporter family, member 5A1

RGD ID:

1307132

Description:

Predicted to enable sodium-independent organic anion transmembrane transporter activity. Predicted to be involved in sodium-independent organic anion transport. Predicted to be located in plasma membrane. Predicted to be active in basolateral plasma membrane. Orthologous to human SLCO5A1 (solute carrier organic anion transporter family member 5A1); INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC312907; solute carrier organic anion transporter family member 5A1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	11,012,001 - 11,141,180 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	11,012,075 - 11,141,177 (+)	Ensembl				GRCr8
mRatBN7.2	5	6,228,938 - 6,358,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	6,228,973 - 6,352,913 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	8,374,006 - 8,496,220 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	10,012,890 - 10,135,101 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	9,708,214 - 9,830,827 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	5,866,362 - 5,994,748 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	5,866,897 - 5,989,667 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	10,704,801 - 10,829,802 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	5,446,597 - 5,571,661 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	5,806,993 - 5,929,188 (+)	NCBI		Celera
RGSC_v3.1	5	5,446,555 - 5,572,105 (+)	NCBI
Cytogenetic Map	5	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Desbuquois dysplasia (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3-iodothyronamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

amitrole (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

dimethylarsinic acid (ISO)

ethyl methanesulfonate (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

hydroquinone O-beta-D-glucopyranoside (ISO)

ketamine (EXP)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel atom (ISO)

niclosamide (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

permethrin (EXP)

pinostrobin (ISO)

pioglitazone (ISO)

progesterone (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

xylitol (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic ion transport (IEA)

sodium-independent organic anion transport (IBA)

transmembrane transport (IEA)

Cellular Component

basolateral plasma membrane (IBA)

membrane (IEA)

plasma membrane (IEA,ISO)

Molecular Function

transmembrane transporter activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21278488

Genomics

Comparative Map Data

Slco5a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	11,012,001 - 11,141,180 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	11,012,075 - 11,141,177 (+)	Ensembl				GRCr8
mRatBN7.2	5	6,228,938 - 6,358,124 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	6,228,973 - 6,352,913 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	8,374,006 - 8,496,220 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	10,012,890 - 10,135,101 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	9,708,214 - 9,830,827 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	5,866,362 - 5,994,748 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	5,866,897 - 5,989,667 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	10,704,801 - 10,829,802 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	5,446,597 - 5,571,661 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	5,806,993 - 5,929,188 (+)	NCBI		Celera
RGSC_v3.1	5	5,446,555 - 5,572,105 (+)	NCBI
Cytogenetic Map	5	q11	NCBI

SLCO5A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	69,667,046 - 69,834,978 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	69,667,041 - 69,835,064 (-)	Ensembl			hg38	GRCh38
GRCh37	8	70,579,281 - 70,747,213 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	70,747,129 - 70,909,762 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	70,747,128 - 70,909,762	NCBI
Celera	8	66,582,145 - 66,744,912 (-)	NCBI		Celera
Cytogenetic Map	8	q13.3	NCBI
HuRef	8	66,078,661 - 66,241,442 (-)	NCBI		HuRef
CHM1_1	8	70,639,975 - 70,802,700 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	70,096,700 - 70,264,566 (-)	NCBI		T2T-CHM13v2.0

Slco5a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	12,936,773 - 13,063,043 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	12,936,773 - 13,062,874 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	12,866,549 - 12,992,796 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	12,866,549 - 12,992,650 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	12,856,630 - 12,981,216 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	12,863,809 - 12,976,349 (-)	NCBI		MGSCv36	mm8
Celera	1	12,824,337 - 12,949,884 (-)	NCBI		Celera
Cytogenetic Map	1	A3	NCBI
cM Map	1	3.71	NCBI

SLCO5A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	85,403,658 - 85,564,520 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	61,042,917 - 61,194,622 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	66,202,168 - 66,359,752 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	67,860,134 - 68,019,664 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	67,860,134 - 68,019,757 (-)	Ensembl			panPan2	panpan1.1

SLCO5A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	18,895,195 - 19,029,385 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	18,895,799 - 19,028,769 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	19,215,735 - 19,353,625 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	18,987,976 - 19,121,514 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	18,987,945 - 19,121,274 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	19,027,513 - 19,165,580 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	19,094,070 - 19,232,078 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	19,374,658 - 19,513,660 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slco5a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	60,129,379 - 60,264,043 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936496	14,521,053 - 14,654,522 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936496	14,518,855 - 14,654,496 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLCO5A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	65,439,237 - 65,587,240 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	65,439,221 - 65,589,115 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	71,224,074 - 71,249,807 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLCO5A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	65,444,143 - 65,601,242 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	65,446,585 - 65,598,876 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	75,851,045 - 76,022,054 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slco5a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	21,341,840 - 21,472,477 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624744	21,341,670 - 21,477,408 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slco5a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	147,515,308 - 147,636,188 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Slco5a1
701 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	94
Count of miRNA genes:	82
Interacting mature miRNAs:	89
Transcripts:	ENSRNOT00000011940
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312562	Pur18	Proteinuria QTL 18	2.6	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	5	6922282	37468560	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	6922282	81330203	Rat
8662454	Vetf3	Vascular elastic tissue fragility QTL 3	27.4		artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	5	7065535	74335773	Rat
1300117	Hrtrt8	Heart rate QTL 8	3.49		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	5	8627230	52665523	Rat
1331756	Rf34	Renal function QTL 34	4.16275		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	87027358	Rat
2313085	Bss59	Bone structure and strength QTL 59	2.9	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	5	8627230	53627230	Rat
1331771	Rf35	Renal function QTL 35	4.36965		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	5	10019064	91770353	Rat

Markers in Region

D5Uwm57

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	6,251,984 - 6,252,128 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	5,889,494 - 5,889,637	NCBI	Rnor6.0
Rnor_5.0	5	10,725,737 - 10,725,880	UniSTS	Rnor5.0
RGSC_v3.4	5	5,468,839 - 5,468,983	RGD	RGSC3.4
RGSC_v3.4	5	5,468,840 - 5,468,983	UniSTS	RGSC3.4
Celera	5	5,828,305 - 5,828,448	UniSTS
RGSC_v3.1	5	5,468,839 - 5,468,983	RGD
Cytogenetic Map	5	q11	UniSTS

AU027527

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	11,069,130 - 11,069,253 (+)	Marker Load Pipeline
mRatBN7.2	5	6,286,071 - 6,286,194 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	5,923,635 - 5,923,757	NCBI	Rnor6.0
Rnor_5.0	5	10,758,833 - 10,758,955	UniSTS	Rnor5.0
RGSC_v3.4	5	5,505,230 - 5,505,352	UniSTS	RGSC3.4
Celera	5	5,862,834 - 5,862,956	UniSTS
Cytogenetic Map	5	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	65	153	73	72	41	92	41	6	308	190	11	130	54	89	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109745	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011940 ⟹ ENSRNOP00000011940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	11,012,075 - 11,141,177 (+)	Ensembl
mRatBN7.2 Ensembl	5	6,230,603 - 6,352,913 (+)	Ensembl
Rnor_6.0 Ensembl	5	5,866,897 - 5,989,667 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098676 ⟹ ENSRNOP00000095549

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	11,012,075 - 11,108,362 (+)	Ensembl
mRatBN7.2 Ensembl	5	6,230,603 - 6,325,262 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109647 ⟹ ENSRNOP00000085127

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	6,228,973 - 6,244,525 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111917 ⟹ ENSRNOP00000091855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	11,012,075 - 11,121,874 (+)	Ensembl
mRatBN7.2 Ensembl	5	6,230,603 - 6,338,816 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112653 ⟹ ENSRNOP00000097916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	11,012,075 - 11,121,574 (+)	Ensembl
mRatBN7.2 Ensembl	5	6,230,603 - 6,338,516 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113639 ⟹ ENSRNOP00000082764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	11,012,075 - 11,135,481 (+)	Ensembl
mRatBN7.2 Ensembl	5	6,230,603 - 6,352,425 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114253 ⟹ ENSRNOP00000087338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	6,230,603 - 6,352,913 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115158 ⟹ ENSRNOP00000090586

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	6,230,603 - 6,300,844 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118060 ⟹ ENSRNOP00000077674

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	11,012,075 - 11,141,177 (+)	Ensembl
mRatBN7.2 Ensembl	5	6,229,395 - 6,352,913 (+)	Ensembl

RefSeq Acc Id:

NM_001107898 ⟹ NP_001101368

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	11,013,671 - 11,135,969 (+)	NCBI
mRatBN7.2	5	6,230,603 - 6,352,913 (+)	NCBI
Rnor_6.0	5	5,868,558 - 5,989,537 (+)	NCBI
Rnor_5.0	5	10,704,801 - 10,829,802 (+)	NCBI
RGSC_v3.4	5	5,446,597 - 5,571,661 (+)	RGD
Celera	5	5,806,993 - 5,929,188 (+)	RGD

Sequence:

show sequence

TGTTCGGGGACTTGGGGCTGCAGTCTCTGCGGGTTCTTCCTGCACCGTTCAGCTCCTAGCTAGC
ACTTCGGTCCCTCCGGGGACCACGGGGTTACTTAGCACTAGCCCCCGGCCGCCGGGATGCCAGC
CCCACGTGCAGCCATCCTTCTCTGACCATCCATTCTCTGCTTTACAGGTCGGCAGCTTTACGAC
CCCATGTGTCTCAAGCCTTGCAGTGGGCACCGAACACCCCTGGGACCACAAAGTGGGATGTTGT
TCGGACAATCGCCTTAAGTGACCCGGTACTGGGCCCAGGTCGCTCCAGCTTCTGGCCACCGTCT
GAGAGACGGCGGCGGAGGGGATGAGCACCGGACGCGCAAAGCGCCTACCGCGAGCTATCCCCGG
GAGGTGGACACCTAGCAGGGCTCCTCGAAGGACCGCGCGGACCTTTACCTCCCCCGGTACAAGG
TGGAGAAAACTTCCTGTTGTGCCTCGGGGATAGATGCTCTGGGCACCTCCCTACTGCTGAGATG
TTCTGCTTTCAGGTTCTGCCATCCTCAGCCCGGGTCTCTGGAGGGGACGACTGAGTGGGTCCGA
CATCAGCCCATCCTGCAGGTGGATGAAAATTGCCGGAGGCCTTGTATGGGATCAGCAATCACAT
TTTAAGAGCCATGGACGAAGGGGCTGCGCAGTCCCGGGCCCAAGAACAGCTAGAGGCACCTTCC
CTGGTAGGAGCTGTCCAAGAGAACTTCGAGTCGGAGTCCTTCAGGTCCAAGAGTTTACCGGTCC
TGCACAGCGCCTCCTGCCGGCAGAATCTCAGTGCTGGGAATGCAGATGGCAAACTGGCCTTGGG
CAGCATTGAAGCTTCAGGTCACCAGGAGACACATCCTGGACGGAACTTGATAGTCCCTAGCCCT
TCTGCTCCATCTACTTCTGCAGGCACTACAACGGAACTCATGGACTGTAACCACAGGAGGGACC
CCAGCAAAACTGTGTCAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCTTTACGT
GGTCCTTACGGATTCTCGCTGCTTCCTAGTGTGCATGTGTTTTCTGACTTTCATCCAGGCGTTA
ATGGTCTCGGGCTATCTGAGCAGCGTCATCACCACCATCGAAAGGCGCTATAGCCTGAAGAGTT
CGGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAGGAAACCTAGTGGTGGTGGTGTTCGTCAG
CTACTTTGGTGGCCGTGGGAGAAGGCCCCTGTGGCTGGCCGTGGGTGGACTTCTTATCGCCATC
GGGGCTGCGCTCTTCGCCTTACCTCACTTCATCTCGCCTCCCTATCAAATCCAAGAGTTGAATG
CTTCGGCCTCCAATGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCCTCCTCC
CTGTCCCAAGGACTCGGGAGGAAACAGTCACTGGATCTACGTGGCTTTATTTGTCTGTGCACAG
GTTCTCATTGGAATGGGCTCCACGCCGATTTACACCCTGGGACCAACCTATTTAGATGACAACG
TCAAGAAAGACAATGCGTCCTTGTACCTAGCCATCATGTACGTCATGGGTGCACTTGGCCCTGC
AGTGGGATACTTACTAGGTGGGCTACTCATTGGCTTTTATGTGGATCCCAGAAATCCCGTTCTC
CTTGATCAGAATGACCCTCGTTTCATCGGAAACTGGTGGAGTGGATTCCTTCTTTGTGCCATTG
CAATGTTTCTTGTGATATTCCCAATGTTTACTTTTCCAAAAAAGCTTCCACCTCGACACAAGAA
AAAGAAAAAATTTTCTGCCGATGTTGTTAGCGACGATGACATCATCAAGGAGAAATCAAACACA
AGCGAGCAAGTGAACAAAAAAGTTTCCTCAATGGGCTTTGGAAAGAATGTCAGAGACCTACCGA
GAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTTTGTGAGTCTGTCATACACAGCCGA
GAGTGCCATTGTCACCGCTTTCATTACCTTCATCCCCAAGTTCATCGAGTCACAGTTTGGTATC
CCGGCTTCCAATGCCAGCATCTACACTGGTGTCATCATTGTCCCCAGCGCTGGTGTTGGCATTG
TCCTGGGAGGCTACATCATAAAAAAACTGAAGCTCGGTGCCAGGGAATCTGCAAAACTCGCAAT
GATCTGCAGTGGGGTGTCTTTGCTGTGCTTCTCAACCCTGTTCATTGTTGGATGTGAAAGCATT
AACCTGGGAGGCATAAACATCCCTTACACAACGGGGAATCTGACAGGAAGTTGTAATGTTAATT
GTGGTTGTAAAATACATGAATATGAACCAGTCTGTGGATCAGATGGGATCACGTACTTCAACCC
TTGTCTGGCTGGCTGCATTAACAGTGGCAATCTTACCACGGGGGTCCGAAATTACACAGAGTGC
ACTTGTGTCCAAAGCCGACAAGTGATCACCCCGCCCACAGTGGGGCAGCGCAGCCAACTTCGAG
TGGTCATCGTGAAGACCTATCTCAATGAGAACGGCTACGCTGTGTCTGGGAAATGCAAGCGAGC
CTGCAATACCCTCATCCCCTTCTTGGTCTTCCTTTTCATAGTTACCTTCATCACAGCGTGTGCT
CAACCGTCAGCCATTATAGTGACACTCAGGTCCGTGGAAGATGAGGAAAGGCCCTTCGCATTGG
GGATGCAGTTTGTTCTGCTGCGAACACTTGCATACATTCCTACTCCGATTTACTTTGGAGCCGT
GATTGACACCACCTGTATGCTCTGGCAGCAGGAGTGCGGAGTGCAGGGCTCCTGCTGGGAGTAC
AACGTGACGTCATTTCGTTTCGTCTACTTTGGCCTGGCGGCTGGCCTCAAGTTTGTTGGCTTTA
TTTTCATTTTCCTGGCCTGGTACTCTATCAAGTACAAAGAGGACGAGCTGCAGAGGCGGCGGTG
CAGAGACTTCCCGCTGAGCACTGTGAGCGAGCATGTGGGCCGGCCCAGCAAAGCCGAGAAATAC
TCCCGGACTACATCGTGCCCAGCCTTCAGCACCCAGGGGGAATCCCACGAGGAAACTGCTCTGC
AGAAGGGATTCCCGGGCACCACACTGACATATCCTGGACCTTTCTCAGAAGCAGAAAGTTCCTC
TGCAGACCGAGGGCTGGACGAGAGCCTCGATGCCGCTCTGTAGCATCCCTGCTGGAGCCTGGAG
AAGGAAGACTTGTGTTGTTGGTTGAGTTGAACACGGCAAGTTGAGA

hide sequence

RefSeq Acc Id:

XM_008763495 ⟹ XP_008761717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	11,012,002 - 11,141,180 (+)	NCBI
mRatBN7.2	5	6,228,940 - 6,358,124 (+)	NCBI
Rnor_6.0	5	5,866,365 - 5,994,748 (+)	NCBI

Sequence:

show sequence

CACAAGTCAGGAAACCCTTGTGTCCTGTTCTCCGCCACTCTTGCAGTCAGGTCCTCTGCCCCAT
GTCTCCAATTTCTCAGCAATGGGAGAACTGATTTACTTGTAGTGCCGCACCTCTGTGCCTTTTC
AAGCAAGCGCCCTTCCTGATCTGGACAGGAAGGTTCTGGATGTCTGGTTCTGCAGTACACGCTG
TATAGAACGCACTGTATAGAATCCTTTTTACGTGGATAATTTGGGGGGGGGGCAAGACAAGTTT
CGCTAACATCAGGGATCTTGTTCCACTTTGGTCCCCAGAATCTGCTATGGCAGAAAAGACATGG
TGCGTATTGAATATGGTTGAAACGAATAGAAGTACTTTACATGAAATGGCCTCTCTGTCCAAGT
TGGTGACTTTTTAAGACACCTGCACCCTTGGGGTTTTAGTGCGGGTCATCTTCCCACTGTGCAG
ATGAAGGGCAGCGGGGTGGCTGGTTGCCTGAGGGCTGGGCTGGGTGGCTGCCCGTGCGCCTGCG
CCCTCTGCTGCTCCGGTCCTGGCGCGTCTCTGTGCCCGTGTGTCTGTCTGGGGAAAAGAGGCTT
GGGTGACAGACCAGAGGTTGGGAGAAGAGTTAGCCAGCTGGACTCGCAGTCTCACTCCCTGATT
TCTCGGCGGCGGGACCGAGACCGCCTCTGCAGGAGGCTGGCCCATCTTCCCGCACCGCCGTCGT
CCTCCTGTGGCCGCTCCTCTCCCAGCCAGGCAGATTGGTCGTCACCCTCGCTAGTCGGCAGCTT
TACGACCCCATGTGTCTCAAGCCTTGCAGTGGGCACCGAACACCCCTGGGACCACAAAGTGGGA
TGTTGTTCGGACAATCGCCTTAAGTGACCCGGTACTGGGCCCAGGTCGCTCCAGCTTCTGGCCA
CCGTCTGAGAGACGGCGGCGGAGGGGATGAGCACCGGACGCGCAAAGCGCCTACCGCGAGCTAT
CCCCGGGAGGTGGACACCTAGCAGGGCTCCTCGAAGGACCGCGCGGACCTTTACCTCCCCCGGT
ACAAGGTGGAGAAAACTTCCTGTTGTGCCTCGGGGATAGATGCTCTGGGCACCTCCCTACTGCT
GAGATGTTCTGCTTTCAGGTTCTGCCATCCTCAGCCCGGGTCTCTGGAGGGGACGACTGAGTGG
GTCCGACATCAGCCCATCCTGCAGGTGGATGAAAATTGCCGGAGGCCTTGTATGGGATCAGCAA
TCACATTTTAAGAGCCATGGACGAAGGGGCTGCGCAGTCCCGGGCCCAAGAACAGCTAGAGGCA
CCTTCCCTGGTAGGAGCTGTCCAAGAGAACTTCGAGTCGGAGTCCTTCAGGTCCAAGAGTTTAC
CGGTCCTGCACAGCGCCTCCTGCCGGCAGAATCTCAGTGCTGGGAATGCAGATGGCAAACTGGC
CTTGGGCAGCATTGAAGCTTCAGGTCACCAGGAGACACATCCTGGACGGAACTTGATAGTCCCT
AGCCCTTCTGCTCCATCTACTTCTGCAGGCACTACAACGGAACTCATGGACTGTAATCACAGGA
GGGACCCCAGCAAAACTGTGTCAGTATCTTCCACTTTGGCCACACTCCAGGAGAGAAGGTGTCT
TTACGTGGTCCTTACGGATTCTCGCTGCTTCCTAGTGTGCATGTGTTTTCTGACTTTCATCCAG
GCGTTAATGGTCTCGGGCTATCTGAGCAGCGTCATCACCACCATCGAAAGGCGCTATAGCCTGA
AGAGTTCGGAGTCAGGGCTGCTGGTCAGCTGCTTTGATATAGGAAACCTAGTGGTGGTGGTGTT
CGTCAGCTACTTTGGTGGCCGTGGGAGAAGGCCCCTGTGGCTGGCCGTGGGTGGACTTCTTATC
GCCATCGGGGCTGCGCTCTTCGCCTTACCTCACTTCATCTCGCCTCCCTATCAAATCCAAGAGT
TGAATGCTTCGGCCTCCAATGATGGCCTTTGTCAGAATGGCAACTCCACAGCCATCTTGGAGCC
TCCTCCCTGTCCCAAGGACTCGGGAGGAAACAGTCACTGGATCTACGTGGCTTTATTTGTCTGT
GCACAGGTTCTCATTGGAATGGGCTCCACGCCGATTTACACCCTGGGACCAACCTATTTAGATG
ACAACGTCAAGAAAGACAATGCGTCCTTGTACCTAGCCATCATGTACGTCATGGGTGCACTTGG
CCCTGCAGTGGGATACTTACTAGGTGGGCTACTCATTGGCTTTTATGTGGATCCCAGAAATCCC
GTTCTCCTTGATCAGAATGACCCTCGTTTCATCGGAAACTGGTGGAGTGGATTCCTTCTTTGTG
CCATTGCAATGTTTCTTGTGATATTCCCAATGTTTACTTTTCCAAAAAAGCTTCCACCTCGACA
CAAGAAAAAGAAAAAATTTTCTGCCGATGTTGTTAGCGACGATGACATCATCAAGGAGAAATCA
AACACAAGCGAGCAAGTGAACAAAAAAGTTTCCTCAATGGGCTTTGGAAAGAATGTCAGAGACC
TACCGAGAGCAGCTGTCAGGATCTTAAGCAACATGACATTCCTTTTTGTGAGTCTGTCATACAC
AGCCGAGAGTGCCATTGTCACCGCTTTCATTACCTTCATCCCCAAGTTCATCGAGTCACAGTTT
GGTATCCCGGCTTCCAATGCCAGCATCTACACTGGTGTCATCATTGTCCCCAGCGCTGGTGTTG
GCATTGTCCTGGGAGGCTACATCATAAAAAAACTGAAGCTCGGTGCCAGGGAATCTGCAAAACT
CGCAATGATCTGCAGTGGGGTGTCTTTGCTGTGCTTCTCAACCCTGTTCATTGTTGGATGTGAA
AGCATTAACCTGGGAGGCATAAACATCCCTTACACAACGGGACCGTCTCTGACCATGCCCCATA
GGAATCTGACAGGAAGTTGTAATGTTAATTGTGGTTGTAAAATACATGAATATGAACCAGTCTG
TGGATCAGATGGGATCACGTACTTCAACCCTTGTCTGGCTGGCTGCATTAACAGTGGCAATCTT
ACCACGGGGGTCCGAAATTACACAGAGTGCACTTGTGTCCAAAGCCGACAAGTGATCACCCCGC
CCACAGTGGGGCAGCGCAGCCAACTTCGAGTGGTCATCGTGAAGACCTATCTCAATGAGAACGG
CTACGCTGTGTCTGGGAAATGCAAGCGAGCCTGCAATACCCTCATCCCCTTCTTGGTCTTCCTT
TTCATAGTTACCTTCATCACAGCGTGTGCTCAACCGTCAGCCATTATAGTGACACTCAGGTCCG
TGGAAGATGAGGAAAGGCCCTTCGCATTGGGGATGCAGTTTGTTCTGCTGCGAACACTTGCATA
CATTCCTACTCCGATTTACTTTGGAGCCGTGATTGACACCACCTGTATGCTCTGGCAGCAGGAG
TGCGGAGTGCAGGGCTCCTGCTGGGAGTACAACGTGACGTCATTTCGTTTCGTCTACTTTGGCC
TGGCGGCTGGCCTCAAGTTTGTTGGCTTTATTTTCATTTTCCTGGCCTGGTACTCTATCAAGTA
CAAAGAGGACGAGCTGCAGAGGCGGCGGTGCAGAGACTTCCCGCTGAGCACTGTGAGCGAGCAT
GTGGGCCGGCCCAGCAAAGCCGAGAAATACTCCCGGACTACATCGTGCCCAGCCTTCAGCACCC
AGGGGGAATCCCACGAGGAAACTGCTCTGCAGAAGGGATTCCCGGGCACCACACTGACATATCC
TGGACCTTTCTCAGAAGCAGAAAGTTCCTCTGCAGACCGAGGGCTGGACGAGAGCCTCGATGCC
GCTCTGTAGCATCCCTGCTGGAGCCTGGAGAAGGAAGACTTGTGTTGTTGGTTGAGTTGAACAC
GGCAAGTTGAGAAACACCTGTGCCTTCTTTCCTTTTGTAAACCTCCACAGACACAATCCTCAAA
CCAACAATACTCAGTACACACAGCCACTGTTGCTGAGGGCTCGGTACCTCAACGGGACGGACAG
CTTCCCCCTCCAGGGAGGAGTTTAGCTGGATCTGCCGCCATGTCTGCTAGGTTCACTTAATGTT
CACAGTCCCTTTGGGTAGAAGCCCGAGGTCCACGGTTAACCGCGGGAAAGGCTATGACCATACA
TATCATTAGCATACACTCCAGACAAAGGTGAGCTTCACCAGGACTTTGCATTTGCAAGTCAAGA
GTTTTTAGATTTGAGCACCTACTGTGAGCTCTGCAGCAAAGCACAACTGAATTTGCCTCAACTA
TGCAATTTGATTGGAAATAGAAAAGTGTGGCATGTCCCTTTGGCTTTCAGAGAGCAAAGCAGAA
ACGTTTTTCCTTAGTGGAAGCTGAATGTTCCCTAAAGCACTGTTAATCGCAATTTAAGCCATAA
CAGACTTATCAATCAGGTAAAAAAAAAAAAACCTTCAAATGCTTCAATGCTTCAAAGAACTGTA
TTATTGTGCAATGGAAGGGTTTCTTGAGAAGTATTTTCTCTAAGTCCATTCACTCCATCTTAAG
GTAGACCAAGAGGCTGCTGAGTCGCACGTCTGCTGGCTTGAATATATAAACTACAGTATTCTTT
CCTAAGGGGCTTTAAAACTAGTGTGCTAAACAGTACGGCTGGAAACTAATCTGAGATGCTCGAT
GGGGAGGAAATGATGATCTTCTCTTCCGAGGAACTCTCGCAGCTCTAAGGGCCCACTGAAACTC
GCTAAGAGTTACTGCTACTTTGACATACAAAGTAGTTGATAAAGAAAATCCTGAGGTAAGATGG
AGTCCCAACTAGGGAACTTCACTTCTCTCTTAACATACTGGCAAATCTCTACTGATTGTTTTCT
CTGTGTGGAAGGTGGTCATGGTTGCCTTGGAGAATGAATGATTCAGTCATGAAAGCTGTACCGT
GGATATGAAAATCACTGCCCAGCAGACGGGAGGTTTGTCAGCTGAACACAGAATATGATCATAC
TTAAATAACGAGTTGGAATGTAAAGAAAGCCAGTCTGCCATACTGAATCCTGTATGGCAGGATT
CATCGTTTCACGGTGCCCTTTGCATGGCCGTTCTTCTGTCTTTCCTCAAGTGGCTCTGAGACAG
GATAATTCCCTTCCTAAAGGCACCTCAGGTCCACTGACAGCTGTTTATCTTTGTCTCTCGGCTT
TAGGCTGCTCAGGATGCTTTCTGTATGGTGTTCTTACGTCAGAGGCCTCTTGGCAAACCTTTGT
GCATCCAACAGTTGGTAACTCATGGGATCTGGCTACACTGGACCAAGATGTCCAATGCACCATA
AAATTATAGCCTCTCTGTCAAAGAACTCATGTCATGTAAGGTGACCTCAGGAAATGTTTCCTCG
TCTGGAAGAGAGGTGGCTGACAGAAGGGCCATGATCCATTCAATCTTGGCAGGGCACACAGGTA
GAATTATGAATATTCTTATTACAGTTCCTGGTATAGAATTGACTTCCTGCCCGTGTAGGAAGCC
CACAAGTCAAGTGGTTTTCTGGGTAATGTCTATAAGAGGCAGAGCTAGTGCCTAGGTGAAAAGA
ATCTTCTTTGACTCCTGGGCTTGGCTGCCATGGAGGTGGGATGCTTAGCTAGGATAGATTGTGA
ATGCTGGGTGTCAGATTTTTGACCAGAGTAACAAACATGAGAGGTTTTCATAAAGTCTTGCAGG
TCAGCCCACGGTGTACTCTTGGGAGTTGGTGTCCCTCACTGGCCTCTGTGGGTGACTGTCATTC
TTTAGAAGGGATAATAAGTGTCCTTTGGTGTTGATGCTAAGCTGATTAGGTTGTAGAGAGGTGG
TGCTTTCTTAATTTTTTTCTGTGATATTAAGATATTTTATTAAGAAACTTCTGGTGGAATTGGT
CCTGTTTTGGTACTAAGATTGATGGGCTCACCAAGGGTGATTAGAACGCTTCTGGTCCCTTCCT
CTACCTTGAATTCAGTTCAGCAGTTTCTGACTGAGCACTGGTTATGTGTTGATGCCATTCATTG
CTCCTTGAGATCCTATGGGATGCAGAGGTCAGAACTCGAAGACCTTGGAAGTGCACTACAGCAT
GCAAATATTAAATATTGATATTAAGTAGCAGGTGTATCATTAATGTACTAGTGGTGATTGTACA
CTAGGTCCTGAAAGTCATGAGGGAATGAAGTTCTGCATTCTATATCAGTTAAAGATTGCTCCCC
AGATGTCTTAGCTCCAGTAGCATCATCTGAATATTGCATAGCCACGGAGTGAGTATTTCATAGG
CAGTGCCATTCAATTGTGCTGATAGAAGAGGTCTTCCGTTTCTGGCAAACTGGTTGCTTTCCTT
GTGGCCGCAGCTCGTAACAGAAACTAACTGCTTTCTGAGCATAGGCTTTTGGGTTGTTTTGACA
AAAGGCAAGTTGTTCTTGTATCATCTCTATAAATTAAATTGTCTTGTTTGGCTTCAGTATGCCA
ATCTAATACGAAGCTTATGGACTTAGAAACTCCCAAGGGCAGAGGGAGGAAGGTGGTGGAGGAA
CCTTCTTTTGATTTTCTTCCTAGTATGAGGTTCTTGTGTTGTGGAGGTGCCCTCACAGGTTGAA
GAGAGTTAAAAGTCATTTGGAACACCATGAGGATGGGGAGAAAGAGAGCATTTGTTGGGGTGAA
TATTTGCAGGATGGTTTCCCAGCATTCAACACCCACTGCATTTTCCAGTTTAAGAGCGGGCGAG
GAAACACGGTTTCCTTCAGTGGCGCAGGCCTGAGCTCAGGACCTTGCATATGACCTCAGGCCCA
TGTTCCCTGAGCAGCACCCCAGTCTTCTCTGGAGAGCATTTTTTATTTGTTTGTTTAAAAAGCA
GATTTGAAACCCTAGGCTCAGAAAGTTGAAGCCAGTTCTTCGGGTGGCTCAGAGTAGCAGTGAC
AGGGGATGAGTGATATGTCCACTGTAAAATAGGTTAGCACCTATCACTGTTTGATGTACTATTG
TTTTTGAAGTTATAGAGACATTCTTTAGAGACATTTATTTCCTTGTATGAATAGAGGAAACATA
GCACACGCCCGTGTGAACCACCCACACTTCATGTTTAACTAGATTCTCAAAGTAAATGTTATTT
ATGTAGCCAAGTATAATACTAAAATCATTCATTATAACTTACTTCAAATGTTTATTTATGGGTT
GAGTTTAATTGAGAACACACCCAGTTTGGTTATTAATTAGGATCTTAGCAGAATTTCCTAAAGT
GAAATGTTATGAAGAAAGGGTTAATTCTGGCTGGTTGAATCTGAGCTTTGGGTGTTTCAGGTGT
ATTATTTATTTCTTTCTCTTGTCAGTAGATTAACATTTCTGCTAACTCATAGACAGCCGTGGGT
TTTCAGAGTCTTAGTGAAGATTTAAAAAGAACATAGAAAATGGACTACAAACCACAGACTCCGT
CTGTCACCTCAGGTGACTGTGATGGTAAACTATATCTTTGCACTCAGGGAAGCCAGCACCCACA
GGAGTTGCTAGAGTGGGGCTCCCAGAGGTCTCAGAAATCCTGTCTCACCAACCATCCAAAACTT
CTGTTCGGTCCACAGTTCTAGCTCACAGTCTTTGATGAACTTCTAGCCAGGAAGTGTCTTCTTT
GTTTTGTTTTTGAGGCTGCTTCGTAGAACCCTGTGTGCACCAAGGAACATCACTACAGTGTGGA
GGGACCCAAAGCCCCCATGGGAACTCTCCCATGAGCTCTGTAGCAAGGCAAGCACTTGCCTAAG
GTGCTAGCTGATAATAACTTGTGACAGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
CTAGAGGTGCAGAGTGTGAAGGTATCTGTTGCTACATAGGTACATGCTGAGTATTCTACGTAGC
AGATAGAAACCAGAATGTTGTAAGTCCCTGAAAAGCCAGATTCGCTAATTCTGTTCTGCAGACT
TGTGAGTAGCCTTCCGCGGTCAGGAGGGATGGCTGGCAGGTGAGGCTAGTGGCCTCGTGTACTT
TGCCTTTTCCCTCTTCTGTCAACTCACCTTTACTGGTAGTTTGTGGTCTACCTGACTGTCGAAG
GCCAAGAAGATACTGCTGGCGTTGTCTGTCCCAGACTTCCTGTTGTGCTGCTTCAACCAGATTT
GTGTTTGTCTGAAGAGGTTTAATTTAAGCAGTTCATTTGTCCTCAGCCTTATGGAGGGTCAAAT
GTGACCAGAAACTCACCTTACTGCTGTTGGCTTTGGCAACATTAAATATAAAATGCCTCGGTGC
TAAAGTGTTTGCAGACGCATGTTCCTCTCTGAAGTCAGTGTTTCAGTGCTTTGCGTTTGGAAAT
CTGGGGGTTCCCCCGAGAGGACAAACCCCGCTGACTTCATTTCCACAGTCCAGAAACTCTAATG
CAAAACTGGGAAGTGTACTGGGGAGTCCTCTTCTACACAAAGGTCAGTGGGAGAATGATCAGAT
GCTAAAAAATAATTTCAGAGAGATAAAAACACATTTAGATAATCTTCTATCTTCTACGGAAAGT
TTCAAGCCCTGGGAGCTGCTCTTCAGCTCTGGGTTGGATGCTGTTGTCTCTGACTGGTAGTTTA
CTCTATATATGGAAAGTAAAGAAACTAATGTTATTGAAAACAAAAGTAATGGTAAGGCTGTTCT
AAAGTAAACCGAGGAGTAAGACTCCCCAGTGGGCATTTGTCTTCAGTATATACCTCTACCCCAA
ACTTAAATGATGATCTAGAGAATGAAGTCCAAGGCCAGCCTTTACTTTGTAGTGTAAGGAAATG
TGAAACTGTGTCAAACTGGTATTAGGATATCTGTGGAGTGTGCGTATGTGCGTGTGTGTGTGTG
TGTGTGTGCGTGTGTGTATCTTTCTGGCTGTGTGTCTATGTGCTTCTCTGTAGAGGCATGTTTG
TGATGAAAGGCTGCTTTGAGTCATAATGTAGAGTTTCATTTTTGTGGTTTTTAGAACAAATATT
TATTTGGAGATCTGCTATGGTAAGGGCCGTATGACTTACTTCTTTATGTCTAATGAAACTGATT
GTCAAAGGACTAATAAACCTGGGTTTACAACATCATGAATACTTGATTATTGAAAATTAAGGGG
GGGAAAAGTTCAAAAAAAATAAAGTGTGTTGGATTGAAA

hide sequence

RefSeq Acc Id:

XM_039109744 ⟹ XP_038965672

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	11,012,330 - 11,141,180 (+)	NCBI
mRatBN7.2	5	6,229,236 - 6,358,124 (+)	NCBI

RefSeq Acc Id:

XM_039109745 ⟹ XP_038965673

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	11,012,001 - 11,141,180 (+)	NCBI
mRatBN7.2	5	6,228,938 - 6,358,124 (+)	NCBI

RefSeq Acc Id:

XM_039109746 ⟹ XP_038965674

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	11,063,474 - 11,141,180 (+)	NCBI
mRatBN7.2	5	6,280,415 - 6,358,124 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101368	(Get FASTA)	NCBI Sequence Viewer
	NP_001423667	(Get FASTA)	NCBI Sequence Viewer
	XP_008761717	(Get FASTA)	NCBI Sequence Viewer
	XP_038965672	(Get FASTA)	NCBI Sequence Viewer
	XP_038965673	(Get FASTA)	NCBI Sequence Viewer
	XP_038965674	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM11534	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011940
	ENSRNOP00000011940.5
	ENSRNOP00000077674
	ENSRNOP00000077674.2
	ENSRNOP00000082764
	ENSRNOP00000082764.1
	ENSRNOP00000091855.1
	ENSRNOP00000095549.1
	ENSRNOP00000097916.1

RefSeq Acc Id:

NP_001101368 ⟸ NM_001107898

- UniProtKB:

A6JFD8 (UniProtKB/TrEMBL), A0A8I6A406 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDEGAAQSRAQEQLEAPSLVGAVQENFESESFRSKSLPVLHSASCRQNLSAGNADGKLALGSIE
ASGHQETHPGRNLIVPSPSAPSTSAGTTTELMDCNHRRDPSKTVSVSSTLATLQERRCLYVVLT
DSRCFLVCMCFLTFIQALMVSGYLSSVITTIERRYSLKSSESGLLVSCFDIGNLVVVVFVSYFG
GRGRRPLWLAVGGLLIAIGAALFALPHFISPPYQIQELNASASNDGLCQNGNSTAILEPPPCPK
DSGGNSHWIYVALFVCAQVLIGMGSTPIYTLGPTYLDDNVKKDNASLYLAIMYVMGALGPAVGY
LLGGLLIGFYVDPRNPVLLDQNDPRFIGNWWSGFLLCAIAMFLVIFPMFTFPKKLPPRHKKKKK
FSADVVSDDDIIKEKSNTSEQVNKKVSSMGFGKNVRDLPRAAVRILSNMTFLFVSLSYTAESAI
VTAFITFIPKFIESQFGIPASNASIYTGVIIVPSAGVGIVLGGYIIKKLKLGARESAKLAMICS
GVSLLCFSTLFIVGCESINLGGINIPYTTGNLTGSCNVNCGCKIHEYEPVCGSDGITYFNPCLA
GCINSGNLTTGVRNYTECTCVQSRQVITPPTVGQRSQLRVVIVKTYLNENGYAVSGKCKRACNT
LIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPIYFGAVIDT
TCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKEDELQRRRCRDF
PLSTVSEHVGRPSKAEKYSRTTSCPAFSTQGESHEETALQKGFPGTTLTYPGPFSEAESSSADR
GLDESLDAAL

hide sequence

RefSeq Acc Id:

XP_008761717 ⟸ XM_008763495

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDEGAAQSRAQEQLEAPSLVGAVQENFESESFRSKSLPVLHSASCRQNLSAGNADGKLALGSIE
ASGHQETHPGRNLIVPSPSAPSTSAGTTTELMDCNHRRDPSKTVSVSSTLATLQERRCLYVVLT
DSRCFLVCMCFLTFIQALMVSGYLSSVITTIERRYSLKSSESGLLVSCFDIGNLVVVVFVSYFG
GRGRRPLWLAVGGLLIAIGAALFALPHFISPPYQIQELNASASNDGLCQNGNSTAILEPPPCPK
DSGGNSHWIYVALFVCAQVLIGMGSTPIYTLGPTYLDDNVKKDNASLYLAIMYVMGALGPAVGY
LLGGLLIGFYVDPRNPVLLDQNDPRFIGNWWSGFLLCAIAMFLVIFPMFTFPKKLPPRHKKKKK
FSADVVSDDDIIKEKSNTSEQVNKKVSSMGFGKNVRDLPRAAVRILSNMTFLFVSLSYTAESAI
VTAFITFIPKFIESQFGIPASNASIYTGVIIVPSAGVGIVLGGYIIKKLKLGARESAKLAMICS
GVSLLCFSTLFIVGCESINLGGINIPYTTGPSLTMPHRNLTGSCNVNCGCKIHEYEPVCGSDGI
TYFNPCLAGCINSGNLTTGVRNYTECTCVQSRQVITPPTVGQRSQLRVVIVKTYLNENGYAVSG
KCKRACNTLIPFLVFLFIVTFITACAQPSAIIVTLRSVEDEERPFALGMQFVLLRTLAYIPTPI
YFGAVIDTTCMLWQQECGVQGSCWEYNVTSFRFVYFGLAAGLKFVGFIFIFLAWYSIKYKEDEL
QRRRCRDFPLSTVSEHVGRPSKAEKYSRTTSCPAFSTQGESHEETALQKGFPGTTLTYPGPFSE
AESSSADRGLDESLDAAL

hide sequence

Ensembl Acc Id:

ENSRNOP00000011940 ⟸ ENSRNOT00000011940

RefSeq Acc Id:	XP_038965673 ⟸ XM_039109745
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A406 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965672 ⟸ XM_039109744
- Peptide Label:	isoform X1
- UniProtKB:	D3ZZM7 (UniProtKB/TrEMBL), A0A8I6A406 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965674 ⟸ XM_039109746
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000077674 ⟸ ENSRNOT00000118060

Ensembl Acc Id:

ENSRNOP00000085127 ⟸ ENSRNOT00000109647

Ensembl Acc Id:

ENSRNOP00000090586 ⟸ ENSRNOT00000115158

Ensembl Acc Id:

ENSRNOP00000087338 ⟸ ENSRNOT00000114253

Ensembl Acc Id:

ENSRNOP00000095549 ⟸ ENSRNOT00000098676

Ensembl Acc Id:

ENSRNOP00000091855 ⟸ ENSRNOT00000111917

Ensembl Acc Id:

ENSRNOP00000097916 ⟸ ENSRNOT00000112653

Ensembl Acc Id:

ENSRNOP00000082764 ⟸ ENSRNOT00000113639

Protein Domains

Kazal-like Major facilitator superfamily (MFS) profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZZM7-F1-model_v2	AlphaFold	D3ZZM7	1-850	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307132	AgrOrtholog
BioCyc Gene	G2FUF-42241	BioCyc
Ensembl Genes	ENSRNOG00000008966	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011940	ENTREZGENE
	ENSRNOT00000011940.7	UniProtKB/TrEMBL
	ENSRNOT00000098676.2	UniProtKB/TrEMBL
	ENSRNOT00000111917.2	UniProtKB/TrEMBL
	ENSRNOT00000112653.2	UniProtKB/TrEMBL
	ENSRNOT00000113639	ENTREZGENE
	ENSRNOT00000113639.2	UniProtKB/TrEMBL
	ENSRNOT00000118060	ENTREZGENE
	ENSRNOT00000118060.2	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1250.20	UniProtKB/TrEMBL
	3.30.60.30	UniProtKB/TrEMBL
InterPro	Kazal_dom_sf	UniProtKB/TrEMBL
	Major_facilitator_SF	UniProtKB/TrEMBL
	MFS_trans_sf	UniProtKB/TrEMBL
	OA_transporter	UniProtKB/TrEMBL
	Prot_inh_Kazal	UniProtKB/TrEMBL
KEGG Report	rno:312907	UniProtKB/TrEMBL
NCBI Gene	312907	ENTREZGENE
PANTHER	OA_transporter	UniProtKB/TrEMBL
	SOLUTE CARRIER ORGANIC ANION TRANSPORTER FAMILY MEMBER 5A1	UniProtKB/TrEMBL
Pfam	Kazal_2	UniProtKB/TrEMBL
	OATP	UniProtKB/TrEMBL
PhenoGen	Slco5a1	PhenoGen
PROSITE	KAZAL_2	UniProtKB/TrEMBL
	MFS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008966	RatGTEx
Superfamily-SCOP	MFS_gen_substrate_transporter	UniProtKB/TrEMBL
	SSF100895	UniProtKB/TrEMBL
UniProt	A0A8I5ZJJ8_RAT	UniProtKB/TrEMBL
	A0A8I5ZV71_RAT	UniProtKB/TrEMBL
	A0A8I6A406	ENTREZGENE
	A0A8I6AG12_RAT	UniProtKB/TrEMBL
	A0A8I6AVN1_RAT	UniProtKB/TrEMBL
	A0A8I6GLP2_RAT	UniProtKB/TrEMBL
	A6JFD8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZZM7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Slco5a1	solute carrier organic anion transporter family, member 5A1	Slco5a1_predicted	solute carrier organic anion transporter family, member 5A1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slco5a1_predicted	solute carrier organic anion transporter family, member 5A1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD