Reps1 (RALBP1 associated Eps domain containing 1) - Rat Genome Database

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Gene: Reps1 (RALBP1 associated Eps domain containing 1) Rattus norvegicus
Analyze
Symbol: Reps1
Name: RALBP1 associated Eps domain containing 1
RGD ID: 1307131
Description: Predicted to enable SH3 domain binding activity. Predicted to be involved in endocytosis and endosomal transport. Predicted to be located in clathrin-coated pit; cytosol; and nucleoplasm. Predicted to be active in cytoplasm and plasma membrane. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation. Orthologous to human REPS1 (RALBP1 associated Eps domain containing 1); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100909392; LOC292944; RalBP1 associated Eps domain containing protein; ralBP1-associated Eps domain-containing protein 1; ralBP1-associated Eps domain-containing protein 1-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,517,589 - 14,595,404 (+)NCBIGRCr8
mRatBN7.2112,697,742 - 12,775,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,697,747 - 12,775,561 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx112,470,060 - 12,547,376 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0118,471,983 - 18,549,304 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0112,678,445 - 12,755,890 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0113,262,049 - 13,298,347 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,212,324 - 13,298,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0114,951,280 - 14,987,342 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,106,941 - 13,185,314 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,107,016 - 13,185,397 (+)NCBI
Celera111,155,459 - 11,232,735 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:20946875  


Genomics

Comparative Map Data
Reps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,517,589 - 14,595,404 (+)NCBIGRCr8
mRatBN7.2112,697,742 - 12,775,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,697,747 - 12,775,561 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx112,470,060 - 12,547,376 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0118,471,983 - 18,549,304 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0112,678,445 - 12,755,890 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0113,262,049 - 13,298,347 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,212,324 - 13,298,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0114,951,280 - 14,987,342 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,106,941 - 13,185,314 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,107,016 - 13,185,397 (+)NCBI
Celera111,155,459 - 11,232,735 (+)NCBICelera
Cytogenetic Map1p12NCBI
REPS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,903,493 - 138,988,253 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,903,493 - 138,988,261 (-)EnsemblGRCh38hg38GRCh38
GRCh376139,224,630 - 139,309,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,267,313 - 139,351,091 (-)NCBINCBI36Build 36hg18NCBI36
Build 346139,267,313 - 139,351,091NCBI
Celera6139,965,691 - 140,049,451 (-)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,787,266 - 136,871,047 (-)NCBIHuRef
CHM1_16139,488,602 - 139,572,395 (-)NCBICHM1_1
T2T-CHM13v2.06140,092,038 - 140,176,789 (-)NCBIT2T-CHM13v2.0
Reps1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391017,931,301 - 18,000,892 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1017,931,609 - 18,000,903 (+)EnsemblGRCm39 Ensembl
GRCm381018,055,562 - 18,125,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,055,861 - 18,125,155 (+)EnsemblGRCm38mm10GRCm38
MGSCv371017,775,746 - 17,844,961 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,778,867 - 17,814,549 (+)NCBIMGSCv36mm8
Celera1017,953,437 - 18,023,302 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.42NCBI
Reps1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,713,655 - 20,752,842 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,677,676 - 20,752,842 (+)NCBIChiLan1.0ChiLan1.0
REPS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,869,061 - 158,954,362 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,766,657 - 156,849,719 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,662,837 - 136,748,743 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,748,143 - 140,830,499 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,748,309 - 140,830,499 (-)Ensemblpanpan1.1panPan2
REPS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,141,321 - 31,200,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,141,258 - 31,181,542 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,014,739 - 32,097,965 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,302,116 - 31,385,526 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,302,829 - 31,386,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,178,496 - 31,261,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0131,060,739 - 31,143,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,371,790 - 31,455,091 (-)NCBIUU_Cfam_GSD_1.0
Reps1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,201,811 - 126,277,843 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,981,244 - 6,056,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,981,037 - 6,057,059 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REPS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,481,343 - 25,565,277 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,481,283 - 25,565,284 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,641,932 - 28,700,509 (+)NCBISscrofa10.2Sscrofa10.2susScr3
REPS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,402,172 - 34,488,994 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,402,127 - 34,491,919 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,546,231 - 6,658,055 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Reps1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475314,970,706 - 15,057,037 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475314,970,693 - 15,057,033 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Reps1
192 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat

Markers in Region
BB161292  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2112,775,319 - 12,775,445 (+)MAPPERmRatBN7.2
Rnor_6.0113,298,106 - 13,298,231NCBIRnor6.0
Rnor_6.0111,772,171 - 11,772,296NCBIRnor6.0
Rnor_5.0113,365,525 - 13,365,650UniSTSRnor5.0
Rnor_5.0114,987,101 - 14,987,226UniSTSRnor5.0
RGSC_v3.4113,185,073 - 13,185,198UniSTSRGSC3.4
Celera111,232,494 - 11,232,619UniSTS
Cytogenetic Map1p12UniSTS
RH142277  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2112,774,056 - 12,775,373 (+)MAPPERmRatBN7.2
Rnor_6.0113,296,843 - 13,298,159NCBIRnor6.0
Rnor_6.0111,770,908 - 11,772,224NCBIRnor6.0
Rnor_5.0114,985,838 - 14,987,154UniSTSRnor5.0
Rnor_5.0113,364,262 - 13,365,578UniSTSRnor5.0
RGSC_v3.4113,183,810 - 13,185,126UniSTSRGSC3.4
Celera111,231,231 - 11,232,547UniSTS
RH 3.4 Map1130.81UniSTS
Cytogenetic Map1p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 24 17 8 19 8 74 23 36 11
Low 1 19 40 33 33 8 11 12 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001394899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001394900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000089607   ⟹   ENSRNOP00000075677
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,698,116 - 12,775,561 (+)Ensembl
Rnor_6.0 Ensembl113,212,324 - 13,298,347 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090703   ⟹   ENSRNOP00000071230
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,698,116 - 12,775,561 (+)Ensembl
Rnor_6.0 Ensembl113,261,876 - 13,298,343 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096610   ⟹   ENSRNOP00000091930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,740,056 - 12,775,561 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118337   ⟹   ENSRNOP00000084736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,697,747 - 12,739,494 (+)Ensembl
RefSeq Acc Id: NM_001394899   ⟹   NP_001381828
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,589 - 14,595,404 (+)NCBI
mRatBN7.2112,697,742 - 12,775,562 (+)NCBI
RefSeq Acc Id: NM_001394900   ⟹   NP_001381829
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,589 - 14,595,404 (+)NCBI
mRatBN7.2112,697,742 - 12,775,562 (+)NCBI
RefSeq Acc Id: NM_001415798   ⟹   NP_001402727
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,589 - 14,595,404 (+)NCBI
mRatBN7.2112,697,742 - 12,775,562 (+)NCBI
RefSeq Acc Id: XM_039105158   ⟹   XP_038961086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105163   ⟹   XP_038961091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105167   ⟹   XP_038961095
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105171   ⟹   XP_038961099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105175   ⟹   XP_038961103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105181   ⟹   XP_038961109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105185   ⟹   XP_038961113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105200   ⟹   XP_038961128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,546,747 - 14,595,404 (+)NCBI
mRatBN7.2112,726,900 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105204   ⟹   XP_038961132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,535,048 - 14,595,404 (+)NCBI
mRatBN7.2112,715,201 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_039105212   ⟹   XP_038961140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
mRatBN7.2112,698,107 - 12,775,556 (+)NCBI
RefSeq Acc Id: XM_063284299   ⟹   XP_063140369
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
RefSeq Acc Id: XM_063284301   ⟹   XP_063140371
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
RefSeq Acc Id: XM_063284303   ⟹   XP_063140373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
RefSeq Acc Id: XM_063284305   ⟹   XP_063140375
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,517,985 - 14,595,404 (+)NCBI
RefSeq Acc Id: XM_063284307   ⟹   XP_063140377
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,546,747 - 14,595,404 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000075677   ⟸   ENSRNOT00000089607
RefSeq Acc Id: ENSRNOP00000071230   ⟸   ENSRNOT00000090703
RefSeq Acc Id: XP_038961086   ⟸   XM_039105158
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961095   ⟸   XM_039105167
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961091   ⟸   XM_039105163
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961099   ⟸   XM_039105171
- Peptide Label: isoform X4
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961109   ⟸   XM_039105181
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961113   ⟸   XM_039105185
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961103   ⟸   XM_039105175
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961140   ⟸   XM_039105212
- Peptide Label: isoform X14
- UniProtKB: A0A0G2JZY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961132   ⟸   XM_039105204
- Peptide Label: isoform X10
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961128   ⟸   XM_039105200
- Peptide Label: isoform X9
- UniProtKB: A0A8I6GJC5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000091930   ⟸   ENSRNOT00000096610
RefSeq Acc Id: ENSRNOP00000084736   ⟸   ENSRNOT00000118337
RefSeq Acc Id: NP_001402727   ⟸   NM_001415798
- Peptide Label: isoform 3
- UniProtKB: A0A0G2JZY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381828   ⟸   NM_001394899
- Peptide Label: isoform 1
- UniProtKB: A0A0G2JZY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001381829   ⟸   NM_001394900
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JZY3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140369   ⟸   XM_063284299
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063140371   ⟸   XM_063284301
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063140375   ⟸   XM_063284305
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063140373   ⟸   XM_063284303
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063140377   ⟸   XM_063284307
- Peptide Label: isoform X15
Protein Domains
EF-hand   EH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JZY3-F1-model_v2 AlphaFold A0A0G2JZY3 1-744 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307131 AgrOrtholog
BioCyc Gene G2FUF-62279 BioCyc
Ensembl Genes ENSRNOG00000059224 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089607.2 UniProtKB/TrEMBL
  ENSRNOT00000090703.2 UniProtKB/TrEMBL
  ENSRNOT00000096610.1 UniProtKB/TrEMBL
  ENSRNOT00000118337.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  EH_dom UniProtKB/TrEMBL
NCBI Gene 292944 ENTREZGENE
PANTHER EH DOMAIN UniProtKB/TrEMBL
  PTHR11216:SF63 UniProtKB/TrEMBL
Pfam EF-hand_4 UniProtKB/TrEMBL
PhenoGen Reps1 PhenoGen
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  PS50031 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000059224 RatGTEx
SMART SM00027 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A0G2JZY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2KB70_RAT UniProtKB/TrEMBL
  A0A8I5ZZS5_RAT UniProtKB/TrEMBL
  A0A8I6GJC5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Reps1  RALBP1 associated Eps domain containing 1  LOC100909392  ralBP1-associated Eps domain-containing protein 1-like  Data merged from RGD:6504231 737654 PROVISIONAL
2012-07-05 LOC100909392  ralBP1-associated Eps domain-containing protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-11-04 Reps1  RALBP1 associated Eps domain containing 1  Reps1  RalBP1 associated Eps domain containing protein   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Reps1  RalBP1 associated Eps domain containing protein   Reps1_predicted  RalBP1 associated Eps domain containing protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Reps1_predicted  RalBP1 associated Eps domain containing protein (predicted)      Symbol and Name status set to approved 70820 APPROVED