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Gene: Zfp507 (zinc finger protein 507) Rattus norvegicus

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Symbol:

Zfp507

Name:

zinc finger protein 507

RGD ID:

1307017

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human ZNF507 (zinc finger protein 507); INTERACTS WITH (+)-schisandrin B; 2,6-dinitrotoluene; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC100912350; LOC292816; zinc finger protein 507-like; Znf507

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF507 (zinc finger protein 507)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znf507 (zinc finger protein 507)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NXPH3 (neurexophilin 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ZNF507 (zinc finger protein 507)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfp507 (zinc finger protein 507)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf507 (zinc finger protein 507)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	znf507	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,572,675 - 97,605,449 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,575,133 - 97,605,405 (-)	Ensembl				GRCr8
mRatBN7.2	1	88,435,787 - 88,468,577 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	88,438,246 - 88,468,518 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	93,842,774 - 93,873,068 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	102,308,751 - 102,339,047 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	95,601,071 - 95,631,365 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	92,089,674 - 92,119,983 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	92,087,215 - 92,120,009 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	93,220,455 - 93,250,657 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	88,332,568 - 88,362,934 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	82,787,503 - 82,817,973 (-)	NCBI		Celera
RGSC_v3.1	1	88,411,793 - 88,441,034 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

lead diacetate (ISO)

leflunomide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

paracetamol (EXP,ISO)

pentanal (ISO)

perfluorohexanesulfonic acid (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IBA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

metal ion binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Zfp507
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,572,675 - 97,605,449 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,575,133 - 97,605,405 (-)	Ensembl				GRCr8
mRatBN7.2	1	88,435,787 - 88,468,577 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	88,438,246 - 88,468,518 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	93,842,774 - 93,873,068 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	102,308,751 - 102,339,047 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	95,601,071 - 95,631,365 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	92,089,674 - 92,119,983 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	92,087,215 - 92,120,009 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	93,220,455 - 93,250,657 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	88,332,568 - 88,362,934 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	82,787,503 - 82,817,973 (-)	NCBI		Celera
RGSC_v3.1	1	88,411,793 - 88,441,034 (-)	NCBI
Cytogenetic Map	1	q21	NCBI

ZNF507
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	32,345,610 - 32,387,667 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	32,345,594 - 32,387,667 (+)	Ensembl			hg38	GRCh38
GRCh37	19	32,836,516 - 32,878,573 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	37,528,393 - 37,570,413 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	19	37,528,392 - 37,570,410	NCBI
Celera	19	29,530,154 - 29,572,221 (+)	NCBI		Celera
Cytogenetic Map	19	q13.11	NCBI
HuRef	19	29,339,547 - 29,381,616 (+)	NCBI		HuRef
CHM1_1	19	32,837,598 - 32,879,632 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	34,864,228 - 34,906,309 (+)	NCBI		T2T-CHM13v2.0

Zfp507
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	35,471,768 - 35,502,749 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	35,471,768 - 35,502,428 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	35,772,343 - 35,803,000 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	35,772,343 - 35,803,003 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	32,662,640 - 32,742,093 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	35,481,103 - 35,560,562 (-)	NCBI		MGSCv36	mm8
Celera	16	63,419,149 - 63,419,596 (+)	NCBI		Celera
Cytogenetic Map	7	B2	NCBI
cM Map	7	21.37	NCBI

Znf507
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	5,558,995 - 5,589,850 (-)	Ensembl
ChiLan1.0	NW_004955468	5,555,576 - 5,589,850 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF507
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	38,317,734 - 38,358,416 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	40,314,301 - 40,358,095 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	29,265,127 - 29,307,440 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	38,016,288 - 38,057,619 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	38,016,288 - 38,057,619 (+)	Ensembl			panPan2	panpan1.1

ZNF507
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	119,543,301 - 119,581,867 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	119,546,916 - 119,582,055 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	118,942,614 - 118,982,077 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	120,144,118 - 120,183,673 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	120,144,123 - 120,183,663 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	119,707,122 - 119,746,513 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	119,326,743 - 119,366,204 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	120,386,972 - 120,426,496 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znf507
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	8,317,423 - 8,351,122 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	3,294,502 - 3,328,503 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	3,295,207 - 3,328,460 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF507
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	42,274,206 - 42,316,755 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	42,274,192 - 42,316,764 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	37,726,796 - 37,769,364 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF507
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	27,399,339 - 27,440,371 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	27,400,968 - 27,435,886 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	4,967,175 - 5,010,815 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf507
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,280,498 - 7,315,250 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	7,280,443 - 7,313,668 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znf507
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	162,841,188 - 162,874,055 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfp507
130 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	412
Count of miRNA genes:	233
Interacting mature miRNAs:	278
Transcripts:	ENSRNOT00000018153
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
737977	Bp160	Blood pressure QTL 160		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	97582336	142582336	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat

Markers in Region

D1Rat342

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	97,577,213 - 97,577,331 (+)	Marker Load Pipeline
mRatBN7.2	1	88,440,326 - 88,440,444 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	92,091,755 - 92,091,872	NCBI	Rnor6.0
Rnor_5.0	1	93,222,539 - 93,222,656	UniSTS	Rnor5.0
RGSC_v3.4	1	88,334,648 - 88,334,765	RGD	RGSC3.4
RGSC_v3.4	1	88,334,649 - 88,334,766	UniSTS	RGSC3.4
Celera	1	82,789,584 - 82,789,701	UniSTS
RGSC_v3.1	1	88,412,759 - 88,412,876	RGD
SHRSP x BN Map	1	44.5299	UniSTS
SHRSP x BN Map	1	44.5299	RGD
Cytogenetic Map	1	q21	UniSTS

D7S2025

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	92,101,105 - 92,102,738	NCBI	Rnor6.0
Rnor_5.0	1	93,231,889 - 93,233,413	UniSTS	Rnor5.0
Celera	1	82,799,139 - 82,800,766	UniSTS
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106248	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018153 ⟹ ENSRNOP00000018153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,575,133 - 97,605,405 (-)	Ensembl
mRatBN7.2 Ensembl	1	88,438,246 - 88,468,518 (-)	Ensembl
Rnor_6.0 Ensembl	1	92,089,674 - 92,119,951 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092121 ⟹ ENSRNOP00000070739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	92,087,215 - 92,120,009 (-)	Ensembl

RefSeq Acc Id:

NM_001106248 ⟹ NP_001099718

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,575,133 - 97,605,405 (-)	NCBI
mRatBN7.2	1	88,438,246 - 88,468,518 (-)	NCBI
Rnor_6.0	1	92,089,674 - 92,119,951 (-)	NCBI
Rnor_5.0	1	93,220,455 - 93,250,657 (-)	NCBI
RGSC_v3.4	1	88,332,568 - 88,362,934 (-)	RGD
Celera	1	82,787,503 - 82,817,973 (-)	RGD

Sequence:

show sequence

CTTGGAGCCACGGCCGAGGAGGGGGCAAAAAGGGGAAAAGAGAGGGAAAAGAGTCGGGAGCGAG
GCGGACGAGGGTAAGGGGACGGCGGGGTCCCGGCCAGCCAAAGGAGGCTCGCAGAAGCGGCAGC
CCGCCGCCCTACCGCAGCTGGATTGTGAATATTGATCCAGGAGACTATCAATTTCAGAAATTGA
TTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAACCTTGGATATGGAAGAAAGCAGCAGC
ATTGCCATGTTGGTGCAAGAGATTGGAGAACAGGAGGCTGTGTTAACTGCTGAAGGAGTCCTCA
GCCCTTCCTCAGAAGCTGACCAACAAAGAAAACCTAAAGCAGATCCATTGGTCCATGTCATCCA
GAAGTTAAGCAAGATAGTGGGGCACGAAAAGTCACAAAAATGTCTTCTGATTGGGAAAAAGCGC
CAACGCCCAAGTGAGATACCACACTCTCTTGAGAGGGTAGAGAACTGTGAGATCCCAGCTAAAG
CAGCCGGGCCCCCTGCTGCTGGGGTTAGGGAAGCCGAGATGTCACAGGCCTGTCCCACCCTTGC
CGCCAATGACGGGAAGACTATGTCCTACCAGTGTAGCCTTTGTAAGTTCCTGTCGCCATCCTTT
TCTGTGCTGAAAGAGCACGTCAAGCAGCACGGGCAGCAGCACGACGTGATGCTCATGTGCTCAG
AGTGCCACGCCACCTCCAGAAGCCAGCAAGAGCTGGAAGCGCATGTGGTGAGTGAGCATGAGAA
CAGTGCCAGCAGCCATGCCCGCCAAGGAGCCACAGAAAGAAAGAGTGAGACCTTGGTGGACATT
CCAGTGAACGTGGGCAGCCCACAGACCCATGCTGTCCAGAGTGCAGCTGTGGCAGAGACGGGGC
GGAGGAAGTGGTATGCATATGAACAGTACGGCATGTACCGGTGCTTGTTCTGCAGCTATACCTG
TGGCCAGCAGCGGATGTTAAAGACACATGCTTGGAAACATGCAGGGGAAGTTAACTGTTCCTAT
CCAATCTTTGAGAATGAAAATGAGCCCCTTGGTCTTCTGGCTTCTTCTGTGTCTGCTGCACCTG
GTGGGGTTGATGCAGTCGTCATTGCTATTGGGGACAGCGAACTCAGCATCCACAATGGGCCATC
TGTACAAGTACAGATTTGCAGCTCCGAACCACCATCGTCTTCATCTCCTTTAGAACAGAGCACA
GAGGAGGGAGTACACCTACGCCAGGCAGTCACCCTGGACTCTAACGAGGAAGAAATGCTGGAGG
TGATGTCTGATTCTGAGGAGAATCTGTTTGCTGATAGTTTGCTCTCTTCGGCACAGAAAATCAT
TAGCAGTAGCCCAAACAAAAAAGGTCACGTGAACGTCATTGTGGAACGTTTGCCAAGTGCTGAA
GAAACCCTCCCGCCAAAACATTTCCTCATGAATGCTGAAATGGAAGAGGGGAAGAGCCCGAGCC
CCGCCGAAGCTCAGACTGGGTGTGGAGGAGCAGGAACTATGTACCATGCTGATAAGTGTACTGT
TGATATCGGGGGGTTGATCATCGGCTGGAGCAGTGCAGAGAAGAAAGACAGTGAGCTAAGTAAG
GGCCTGGCTCCTGATGAGAATGCCCCACCAGGACGGAGAAGGACAAATTCTGAGTCTCTCAGGC
TGCACTCCTTAGCTGCAGAAGCCCTTGTCACCATGCCAATAAGAGCTGCTGAACTAACAAGAGC
CAGCCTTGGGCACTATGGGGACATAAACCTTTTAGATCCAGACACTGGACAAAGGCAGGTCAGT
GGTCCATTGGCAACATACTCAAAAAAAATCATGTCTCCTCTTAAGAACTCTTCAGATGGAGGAA
CAAGTTTTAACCAAAGCAATTCCACTGTGGTAGCTCTCCCAGAGGGAAGGCAGGAATTGTCAGA
TGGGCAAGTTAAGACAGGCATCAGTATGTCCCTTCTTACTGTAATAGAAAAACTGAGAGAAAGG
ACAGACCAGAATGCATCAGATGATGACATTTTGAAAGAGTTGCAGGACAATGCCCAGTGTCAGC
CCAACAGCGATGGGAGTTTGTTGGGGTCCAACGTGGTGGAATACATCCCAGATGCCGAGCGGCC
CTACCGATGCCGCCTGTGCAACTACTCGAGTGGCAACAGGGGCTACATCAAGCAGCACCTGCGT
GTCCATCGGCAGAGGCAGCCTTACCAGTGTCCTATCTGTGAGCACATAGCTGAGAACAGCAAAG
ACTTGGAAAGCCACATGATCAACCACTGTAAAACCAGAATACACCAATGTAAGCAGTGCAAAGA
ATCTTTCCATTACAAGAGCCAACTGAGGAATCATGAGAGAGAGCAGCACTGCATGCCCAACACC
TTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGATGCCACCGATGGAAAGTGTGTTCAGG
AAGGGAACAAGTCTTCAACCCAGAAACAGTATAGGTGTGATGTGTGTGATTACACAAGTACAAC
ATATGTCGGTGTCAGGAACCACAGACGAATCCATAACTCAGATAAGCCATACAGGTGCTCCTTG
TGTGGGTATGTGTGCAGCCACCCCCCTTCCTTGAAGTCACACATGTGGAAACATGCAAGTGACC
AGAACTACAACTATGAGCAAGTTAACAAGGCCATCAACGATGCAATCTCACAAAGTGGCAGAGT
TCTGGGGAAATCCCGTGGGAAACCGCTCTTAACCAGCAGTGAAGAGAGAACTGGCCCTACCACA
GGCAGTCCAGAAAACTTGGTGTCCTCCTCGGAGCTCAGTTCCCAACTGCCTGGTGACGGTATCG
ACGCCAGCGAACTTGAGAAACTGAACCCCACAGGCAGCAGCTCTGACATCTCAGGAAGGAGCTG
CAGCTTGGCTACTCCAGGCACTGAGTACTGCGTGTTGCTCTTCTGCTGCTGCATCTGTGGCTTT
GAGTCAACCAGCAAGGAGAGCCTCCTGGATCACATGAAGGAACATGAGGGGGAGATTGTCAGCA
TCATCCTGAACAAGGACCACAGCACAGCCCTGAATGCCAACTAGCTAGGAGCATGTGGGAGGGC
CACTCTGAACCGCAGCTTACCCTCAGCGCCATCACGAGCTCATGAGACATGGAAGAAGCGGTGG
TGTGGGTGATATTCGGTGCAGAGTAAGGAGACAGAGCTATAACCCTGTGTGAGCCCCTGGTGCC
CCCTTGGTAGTGTCACTGTTTATTGTTAAAAGCAAGCAAGCTCTGCAGAGCCACACTGGTCAGC
TCTACAGTGGCCGGGCTCTGATGAGGAAAGTGGCAAATGGGAAGGGGCAGTTCCCACTGTTGCC
AGGATGGGCAGTAGGGAGAGGGAGGGTAACTTCCCTGTCTCCAGAGAGCAATGGAGTGAGGAAT
GGGCTTCATAAACCTTTTCCTTGTGTTGATAGGGATTCATCACAGACTCAATGTAGGGCGTGGT
CCTTCACTCCCTAAAAAAGAAGAGAGATACCCAAATCACTCCTGGATTATAAACATTTGGGAAG
TAAATTATTGTTTCAAATTCACAGTGACTCCACACAAGACTCAGACCAAATTTCAGGTTCACAG
AAATGGGTGATTGATTTCTCAGAGGTCAGTGTGAACAAACAGAGCCCACTTCTCCAGTTACACA
GCTCCACACACCTTCACCGCCAGCAGTAGTCTGACGGCCTCCTCAAGCAGGACGGAGACTACTA
CGCACCACCGTCCTTGAGCTGGGTGCTCACCTGCTACCCAAGCACACTGTAGCCTGCGAGGCAA
AGGAAGAAGCTCTGGGGAGGCTGGGCGTGGTGGGGCAGACTAAAGTCCACAGGTGTGGCTTCTG
AGCAGGGACTCCAGGTTTGAGGCTAACCTGGGTTAGCAGGACTGGGCCTCCTGAGGTTAGAAAG
ATCACTTGGAGAATGAAAGCTGAAAGTCAGCTGCCTCAAAAGTAGCACATCTGTTAAGGTTTTC
TCTACTTAGACTTTATGAGTTTGGTTATATTTAACAGAACAACCCAGGTGACTAAAGAATGGTA
AAACTTCAGTCTGTTTTAATAAGAGACTGGTATAGTTCACATAGTCAGGAGGCAGTGGATTTGA
GAGTTTGAGGCTAGCCTGGTCTACATAGCAAGTTCCAGGCTAACTAAGGCTTCAAAGTGAGATC
TTGTCTC

hide sequence

RefSeq Acc Id:

XM_006228885 ⟹ XP_006228947

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,572,675 - 97,605,449 (-)	NCBI
mRatBN7.2	1	88,435,787 - 88,468,577 (-)	NCBI
Rnor_6.0	1	92,090,276 - 92,119,983 (-)	NCBI
Rnor_5.0	1	93,220,455 - 93,250,657 (-)	NCBI

Sequence:

show sequence

GCCGCTCACGTGATCAGTCTCAGCGCCGCCATCTTGGAGCCACGGCCGAGGAGGGGGCAAAAAG
GGGAAAAGAGAGGGAAAAGAGTCGGGAGCGAGGCGGACGAGGCTGGATTGTGAATATTGATCCA
GGAGACTATCAATTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCCATGTAAC
CTTGGATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACAGGAGGCT
GTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGCTGACCAACAAAGAAAACCTAAAG
CAGATCCATTGGTCCATGTCATCCAGAAGTTAAGCAAGATAGTGGGGCACGAAAAGTCACAAAA
ATGTCTTCTGATTGGGAAAAAGCGCCAACGCCCAAGTGAGATACCACACTCTCTTGAGAGGGTA
GAGAACTGTGAGATCCCAGCTAAAGCAGCCGGGCCCCCTGCTGCTGGGGTTAGGGAAGCCGAGA
TGTCACAGGCCTGTCCCACCCTTGCCGCCAATGACGGGAAGACTATGTCCTACCAGTGTAGCCT
TTGTAAGTTCCTGTCGCCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCACGGGCAGCAG
CACGACGTGATGCTCATGTGCTCAGAGTGCCACGCCACCTCCAGAAGCCAGCAAGAGCTGGAAG
CGCATGTGGTGAGTGAGCATGAGAACAGTGCCAGCAGCCATGCCCGCCAAGGAGCCACAGAAAG
AAAGAGTGAGACCTTGGTGGACATTCCAGTGAACGTGGGCAGCCCACAGACCCATGCTGTCCAG
AGTGCAGCTGTGGCAGAGACGGGGCGGAGGAAGTGGTATGCATATGAACAGTACGGCATGTACC
GGTGCTTGTTCTGCAGCTATACCTGTGGCCAGCAGCGGATGTTAAAGACACATGCTTGGAAACA
TGCAGGGGAAGTTAACTGTTCCTATCCAATCTTTGAGAATGAAAATGAGCCCCTTGGTCTTCTG
GCTTCTTCTGTGTCTGCTGCACCTGGTGGGGTTGATGCAGTCGTCATTGCTATTGGGGACAGCG
AACTCAGCATCCACAATGGGCCATCTGTACAAGTACAGATTTGCAGCTCCGAACCACCATCGTC
TTCATCTCCTTTAGAACAGAGCACAGAGGAGGGAGTACACCTACGCCAGGCAGTCACCCTGGAC
TCTAACGAGGAAGAAATGCTGGAGGTGATGTCTGATTCTGAGGAGAATCTGTTTGCTGATAGTT
TGCTCTCTTCGGCACAGAAAATCATTAGCAGTAGCCCAAACAAAAAAGGTCACGTGAACGTCAT
TGTGGAACGTTTGCCAAGTGCTGAAGAAACCCTCCCGCCAAAACATTTCCTCATGAATGCTGAA
ATGGAAGAGGGGAAGAGCCCGAGCCCCGCCGAAGCTCAGACTGGGTGTGGAGGAGCAGGAACTA
TGTACCATGCTGATAAGTGTACTGTTGATATCGGGGGGTTGATCATCGGCTGGAGCAGTGCAGA
GAAGAAAGACAGTGAGCTAAGTAAGGGCCTGGCTCCTGATGAGAATGCCCCACCAGGACGGAGA
AGGACAAATTCTGAGTCTCTCAGGCTGCACTCCTTAGCTGCAGAAGCCCTTGTCACCATGCCAA
TAAGAGCTGCTGAACTAACAAGAGCCAGCCTTGGGCACTATGGGGACATAAACCTTTTAGATCC
AGACACTGGACAAAGGCAGGTCAGTGGTCCATTGGCAACATACTCAAAAAAAATCATGTCTCCT
CTTAAGAACTCTTCAGATGGAGGAACAAGTTTTAACCAAAGCAATTCCACTGTGGTAGCTCTCC
CAGAGGGAAGGCAGGAATTGTCAGATGGGCAAGTTAAGACAGGCATCAGTATGTCCCTTCTTAC
TGTAATAGAAAAACTGAGAGAAAGGACAGACCAGAATGCATCAGATGATGACATTTTGAAAGAG
TTGCAGGACAATGCCCAGTGTCAGCCCAACAGCGATGGGAGTTTGTTGGGGTCCAACGTGGTGG
AATACATCCCAGATGCCGAGCGGCCCTACCGATGCCGCCTGTGCAACTACTCGAGTGGCAACAG
GGGCTACATCAAGCAGCACCTGCGTGTCCATCGGCAGAGGCAGCCTTACCAGTGTCCTATCTGT
GAGCACATAGCTGAGAACAGCAAAGACTTGGAAAGCCACATGATCAACCACTGTAAAACCAGAA
TACACCAATGTAAGCAGTGCAAAGAATCTTTCCATTACAAGAGCCAACTGAGGAATCATGAGAG
AGAGCAGCACTGCATGCCCAACACCTTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGAT
GCCACCGATGGAAAGTGTGTTCAGGAAGGGAACAAGTCTTCAACCCAGAAACAGTATAGGTGTG
ATGTGTGTGATTACACAAGTACAACATATGTCGGTGTCAGGAACCACAGACGAATCCATAACTC
AGATAAGCCATACAGGTGCTCCTTGTGTGGGTATGTGTGCAGCCACCCCCCTTCCTTGAAGTCA
CACATGTGGAAACATGCAAGTGACCAGAACTACAACTATGAGCAAGTTAACAAGGCCATCAACG
ATGCAATCTCACAAAGTGGCAGAGTTCTGGGGAAATCCCGTGGGAAACCGCTCTTAACCAGCAG
TGAAGAGAGAACTGGCCCTACCACAGGCAGTCCAGAAAACTTGGTGTCCTCCTCGGAGCTCAGT
TCCCAACTGCCTGGTGACGGTATCGACGCCAGCGAACTTGAGAAACTGAACCCCACAGGCAGCA
GCTCTGACATCTCAGGAAGGAGCTGCAGCTTGGCTACTCCAGGCACTGAGTACTGCGTGTTGCT
CTTCTGCTGCTGCATCTGTGGCTTTGAGTCAACCAGCAAGGAGAGCCTCCTGGATCACATGAAG
GAACATGAGGGGGAGATTGTCAGCATCATCCTGAACAAGGACCACAGCACAGCCCTGAATGCCA
ACTAGCTAGGAGCATGTGGGAGGGCCACTCTGAACCGCAGCTTACCCTCAGCGCCATCACGAGC
TCATGAGACATGGAAGAAGCGGTGGTGTGGGTGATATTCGGTGCAGAGTAAGGAGACAGAGCTA
TAACCCTGTGTGAGCCCCTGGTGCCCCCTTGGTAGTGTCACTGTTTATTGTTAAAAGCAAGCAA
GCTCTGCAGAGCCACACTGGTCAGCTCTACAGTGGCCGGGCTCTGATGAGGAAAGTGGCAAATG
GGAAGGGGCAGTTCCCACTGTTGCCAGGATGGGCAGTAGGGAGAGGGAGGGTAACTTCCCTGTC
TCCAGAGAGCAATGGAGTGAGGAATGGGCTTCATAAACCTTTTCCTTGTGTTGATAGGGATTCA
TCACAGACTCAATGTAGGGCGTGGTCCTTCACTCCCTAAAAAAGAAGAGAGATACCCAAATCAC
TCCTGGATTATAAACATTTGGGAAGTAAATTATTGTTTCAAATTCACAGTGACTCCACACAAGA
CTCAGA

hide sequence

RefSeq Acc Id:

XM_006228886 ⟹ XP_006228948

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,572,675 - 97,605,425 (-)	NCBI
mRatBN7.2	1	88,435,787 - 88,468,544 (-)	NCBI
Rnor_6.0	1	92,090,276 - 92,119,983 (-)	NCBI
Rnor_5.0	1	93,220,455 - 93,250,657 (-)	NCBI

Sequence:

show sequence

GCCGCTCACGTGATCAGTCTCAGCGCCGCCATCTTGGAGCCACGGCCGAGGAGGGGGCAAAAAG
GGGAAAAGAGAGGGAAAAGAGTCGGGAGCGAGGCGGACGAGGGTAAGGGGACGGCGGGGTCCCG
GCCAGCCAAAGGAGGCTCGCAGAAGCGGCAGCCCGCCGCCCTACCGCAGCTGGATTGTGAATAT
TGATCCAGGAGACTATCAATTTCAGAAATTGATTGGAAAGACACTGGCTCTGCCACTAACAGCC
ATGTAACCTTGGATATGGAAGAAAGCAGCAGCATTGCCATGTTGGTGCAAGAGATTGGAGAACA
GGAGGCTGTGTTAACTGCTGAAGGAGTCCTCAGCCCTTCCTCAGAAGCTGACCAACAAAGAAAA
CCTAAAGCAGATCCATTGGTCCATGTCATCCAGAAGTTAAGCAAGATAGTGGGGCACGAAAAGT
CACAAAAATGTCTTCTGATTGGGAAAAAGCGCCAACGCCCAAGTGAGATACCACACTCTCTTGA
GAGGGTAGAGAACTGTGAGATCCCAGCTAAAGCAGCCGGGCCCCCTGCTGCTGGGGTTAGGGAA
GCCGAGATGTCACAGGCCTGTCCCACCCTTGCCGCCAATGACGGGAAGACTATGTCCTACCAGT
GTAGCCTTTGTAAGTTCCTGTCGCCATCCTTTTCTGTGCTGAAAGAGCACGTCAAGCAGCACGG
GCAGCAGCACGACGTGATGCTCATGTGCTCAGAGTGCCACGCCACCTCCAGAAGCCAGCAAGAG
CTGGAAGCGCATGTGGTGAGTGAGCATGAGAACAGTGCCAGCAGCCATGCCCGCCAAGGAGCCA
CAGAAAGAAAGAGTGAGACCTTGGTGGACATTCCAGTGAACGTGGGCAGCCCACAGACCCATGC
TGTCCAGAGTGCAGCTGTGGCAGAGACGGGGCGGAGGAAGTGGTATGCATATGAACAGTACGGC
ATGTACCGGTGCTTGTTCTGCAGCTATACCTGTGGCCAGCAGCGGATGTTAAAGACACATGCTT
GGAAACATGCAGGGGAAGTTAACTGTTCCTATCCAATCTTTGAGAATGAAAATGAGCCCCTTGG
TCTTCTGGCTTCTTCTGTGTCTGCTGCACCTGGTGGGGTTGATGCAGTCGTCATTGCTATTGGG
GACAGCGAACTCAGCATCCACAATGGGCCATCTGTACAAGTACAGATTTGCAGCTCCGAACCAC
CATCGTCTTCATCTCCTTTAGAACAGAGCACAGAGGAGGGAGTACACCTACGCCAGGCAGTCAC
CCTGGACTCTAACGAGGAAGAAATGCTGGAGGTGATGTCTGATTCTGAGGAGAATCTGTTTGCT
GATAGTTTGCTCTCTTCGGCACAGAAAATCATTAGCAGTAGCCCAAACAAAAAAGGTCACGTGA
ACGTCATTGTGGAACGTTTGCCAAGTGCTGAAGAAACCCTCCCGCCAAAACATTTCCTCATGAA
TGCTGAAATGGAAGAGGGGAAGAGCCCGAGCCCCGCCGAAGCTCAGACTGGGTGTGGAGGAGCA
GGAACTATGTACCATGCTGATAAGTGTACTGTTGATATCGGGGGGTTGATCATCGGCTGGAGCA
GTGCAGAGAAGAAAGACAGTGAGCTAAGTAAGGGCCTGGCTCCTGATGAGAATGCCCCACCAGG
ACGGAGAAGGACAAATTCTGAGTCTCTCAGGCTGCACTCCTTAGCTGCAGAAGCCCTTGTCACC
ATGCCAATAAGAGCTGCTGAACTAACAAGAGCCAGCCTTGGGCACTATGGGGACATAAACCTTT
TAGATCCAGACACTGGACAAAGGCAGAGCCAACTGAGGAATCATGAGAGAGAGCAGCACTGCAT
GCCCAACACCTTGTCAGTAGCTTCGAATGAGCCAAGAATTTCCCGTGATGCCACCGATGGAAAG
TGTGTTCAGGAAGGGAACAAGTCTTCAACCCAGAAACAGTATAGGTGTGATGTGTGTGATTACA
CAAGTACAACATATGTCGGTGTCAGGAACCACAGACGAATCCATAACTCAGATAAGCCATACAG
GTGCTCCTTGTGTGGGTATGTGTGCAGCCACCCCCCTTCCTTGAAGTCACACATGTGGAAACAT
GCAAGTGACCAGAACTACAACTATGAGCAAGTTAACAAGGCCATCAACGATGCAATCTCACAAA
GTGGCAGAGTTCTGGGGAAATCCCGTGGGAAACCGCTCTTAACCAGCAGTGAAGAGAGAACTGG
CCCTACCACAGGCAGTCCAGAAAACTTGGTGTCCTCCTCGGAGCTCAGTTCCCAACTGCCTGGT
GACGGTATCGACGCCAGCGAACTTGAGAAACTGAACCCCACAGGCAGCAGCTCTGACATCTCAG
GAAGGAGCTGCAGCTTGGCTACTCCAGGCACTGAGTACTGCGTGTTGCTCTTCTGCTGCTGCAT
CTGTGGCTTTGAGTCAACCAGCAAGGAGAGCCTCCTGGATCACATGAAGGAACATGAGGGGGAG
ATTGTCAGCATCATCCTGAACAAGGACCACAGCACAGCCCTGAATGCCAACTAGCTAGGAGCAT
GTGGGAGGGCCACTCTGAACCGCAGCTTACCCTCAGCGCCATCACGAGCTCATGAGACATGGAA
GAAGCGGTGGTGTGGGTGATATTCGGTGCAGAGTAAGGAGACAGAGCTATAACCCTGTGTGAGC
CCCTGGTGCCCCCTTGGTAGTGTCACTGTTTATTGTTAAAAGCAAGCAAGCTCTGCAGAGCCAC
ACTGGTCAGCTCTACAGTGGCCGGGCTCTGATGAGGAAAGTGGCAAATGGGAAGGGGCAGTTCC
CACTGTTGCCAGGATGGGCAGTAGGGAGAGGGAGGGTAACTTCCCTGTCTCCAGAGAGCAATGG
AGTGAGGAATGGGCTTCATAAACCTTTTCCTTGTGTTGATAGGGATTCATCACAGACTCAATGT
AGGGCGTGGTCCTTCACTCCCTAAAAAAGAAGAGAGATACCCAAATCACTCCTGGATTATAAAC
ATTTGGGAAGTAAATTATTGTTTCAAATTCACAGTGACTCCACACAAGACTCAGA

hide sequence

RefSeq Acc Id:

XM_063283728 ⟹ XP_063139798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,572,675 - 97,605,449 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099718	(Get FASTA)	NCBI Sequence Viewer
	XP_006228947	(Get FASTA)	NCBI Sequence Viewer
	XP_006228948	(Get FASTA)	NCBI Sequence Viewer
	XP_063139798	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM07606	(Get FASTA)	NCBI Sequence Viewer
	EDM07607	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018153
	ENSRNOP00000018153.5

RefSeq Acc Id:

NP_001099718 ⟸ NM_001106248

- UniProtKB:

D3ZYC1 (UniProtKB/TrEMBL), A6JAC7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEESSSIAMLVQEIGEQEAVLTAEGVLSPSSEADQQRKPKADPLVHVIQKLSKIVGHEKSQKCL
LIGKKRQRPSEIPHSLERVENCEIPAKAAGPPAAGVREAEMSQACPTLAANDGKTMSYQCSLCK
FLSPSFSVLKEHVKQHGQQHDVMLMCSECHATSRSQQELEAHVVSEHENSASSHARQGATERKS
ETLVDIPVNVGSPQTHAVQSAAVAETGRRKWYAYEQYGMYRCLFCSYTCGQQRMLKTHAWKHAG
EVNCSYPIFENENEPLGLLASSVSAAPGGVDAVVIAIGDSELSIHNGPSVQVQICSSEPPSSSS
PLEQSTEEGVHLRQAVTLDSNEEEMLEVMSDSEENLFADSLLSSAQKIISSSPNKKGHVNVIVE
RLPSAEETLPPKHFLMNAEMEEGKSPSPAEAQTGCGGAGTMYHADKCTVDIGGLIIGWSSAEKK
DSELSKGLAPDENAPPGRRRTNSESLRLHSLAAEALVTMPIRAAELTRASLGHYGDINLLDPDT
GQRQVSGPLATYSKKIMSPLKNSSDGGTSFNQSNSTVVALPEGRQELSDGQVKTGISMSLLTVI
EKLRERTDQNASDDDILKELQDNAQCQPNSDGSLLGSNVVEYIPDAERPYRCRLCNYSSGNRGY
IKQHLRVHRQRQPYQCPICEHIAENSKDLESHMINHCKTRIHQCKQCKESFHYKSQLRNHEREQ
HCMPNTLSVASNEPRISRDATDGKCVQEGNKSSTQKQYRCDVCDYTSTTYVGVRNHRRIHNSDK
PYRCSLCGYVCSHPPSLKSHMWKHASDQNYNYEQVNKAINDAISQSGRVLGKSRGKPLLTSSEE
RTGPTTGSPENLVSSSELSSQLPGDGIDASELEKLNPTGSSSDISGRSCSLATPGTEYCVLLFC
CCICGFESTSKESLLDHMKEHEGEIVSIILNKDHSTALNAN

hide sequence

RefSeq Acc Id:	XP_006228947 ⟸ XM_006228885
- Peptide Label:	isoform X1
- UniProtKB:	D3ZYC1 (UniProtKB/TrEMBL), A6JAC7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEESSSIAMLVQEIGEQEAVLTAEGVLSPSSEADQQRKPKADPLVHVIQKLSKIVGHEKSQKCL LIGKKRQRPSEIPHSLERVENCEIPAKAAGPPAAGVREAEMSQACPTLAANDGKTMSYQCSLCK FLSPSFSVLKEHVKQHGQQHDVMLMCSECHATSRSQQELEAHVVSEHENSASSHARQGATERKS ETLVDIPVNVGSPQTHAVQSAAVAETGRRKWYAYEQYGMYRCLFCSYTCGQQRMLKTHAWKHAG EVNCSYPIFENENEPLGLLASSVSAAPGGVDAVVIAIGDSELSIHNGPSVQVQICSSEPPSSSS PLEQSTEEGVHLRQAVTLDSNEEEMLEVMSDSEENLFADSLLSSAQKIISSSPNKKGHVNVIVE RLPSAEETLPPKHFLMNAEMEEGKSPSPAEAQTGCGGAGTMYHADKCTVDIGGLIIGWSSAEKK DSELSKGLAPDENAPPGRRRTNSESLRLHSLAAEALVTMPIRAAELTRASLGHYGDINLLDPDT GQRQVSGPLATYSKKIMSPLKNSSDGGTSFNQSNSTVVALPEGRQELSDGQVKTGISMSLLTVI EKLRERTDQNASDDDILKELQDNAQCQPNSDGSLLGSNVVEYIPDAERPYRCRLCNYSSGNRGY IKQHLRVHRQRQPYQCPICEHIAENSKDLESHMINHCKTRIHQCKQCKESFHYKSQLRNHEREQ HCMPNTLSVASNEPRISRDATDGKCVQEGNKSSTQKQYRCDVCDYTSTTYVGVRNHRRIHNSDK PYRCSLCGYVCSHPPSLKSHMWKHASDQNYNYEQVNKAINDAISQSGRVLGKSRGKPLLTSSEE RTGPTTGSPENLVSSSELSSQLPGDGIDASELEKLNPTGSSSDISGRSCSLATPGTEYCVLLFC CCICGFESTSKESLLDHMKEHEGEIVSIILNKDHSTALNAN hide sequence

RefSeq Acc Id:

XP_006228948 ⟸ XM_006228886

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEESSSIAMLVQEIGEQEAVLTAEGVLSPSSEADQQRKPKADPLVHVIQKLSKIVGHEKSQKCL
LIGKKRQRPSEIPHSLERVENCEIPAKAAGPPAAGVREAEMSQACPTLAANDGKTMSYQCSLCK
FLSPSFSVLKEHVKQHGQQHDVMLMCSECHATSRSQQELEAHVVSEHENSASSHARQGATERKS
ETLVDIPVNVGSPQTHAVQSAAVAETGRRKWYAYEQYGMYRCLFCSYTCGQQRMLKTHAWKHAG
EVNCSYPIFENENEPLGLLASSVSAAPGGVDAVVIAIGDSELSIHNGPSVQVQICSSEPPSSSS
PLEQSTEEGVHLRQAVTLDSNEEEMLEVMSDSEENLFADSLLSSAQKIISSSPNKKGHVNVIVE
RLPSAEETLPPKHFLMNAEMEEGKSPSPAEAQTGCGGAGTMYHADKCTVDIGGLIIGWSSAEKK
DSELSKGLAPDENAPPGRRRTNSESLRLHSLAAEALVTMPIRAAELTRASLGHYGDINLLDPDT
GQRQSQLRNHEREQHCMPNTLSVASNEPRISRDATDGKCVQEGNKSSTQKQYRCDVCDYTSTTY
VGVRNHRRIHNSDKPYRCSLCGYVCSHPPSLKSHMWKHASDQNYNYEQVNKAINDAISQSGRVL
GKSRGKPLLTSSEERTGPTTGSPENLVSSSELSSQLPGDGIDASELEKLNPTGSSSDISGRSCS
LATPGTEYCVLLFCCCICGFESTSKESLLDHMKEHEGEIVSIILNKDHSTALNAN

hide sequence

Ensembl Acc Id:

ENSRNOP00000018153 ⟸ ENSRNOT00000018153

Ensembl Acc Id:

ENSRNOP00000070739 ⟸ ENSRNOT00000092121

RefSeq Acc Id:	XP_063139798 ⟸ XM_063283728
- Peptide Label:	isoform X2

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYC1-F1-model_v2	AlphaFold	D3ZYC1	1-937	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689975

Promoter ID:

EPDNEW_R500

Type:

multiple initiation site

Name:

Zfp507_1

Description:

zinc finger protein 507

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	92,119,968 - 92,120,028	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307017	AgrOrtholog
BioCyc Gene	G2FUF-59964	BioCyc
Ensembl Genes	ENSRNOG00000013565	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018153	ENTREZGENE
	ENSRNOT00000018153.7	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Zinc_finger/UBP_domain	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:292816	UniProtKB/TrEMBL
NCBI Gene	292816	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 507	UniProtKB/TrEMBL
PhenoGen	Zfp507	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013565	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A6JAC7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYC1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Zfp507	zinc finger protein 507	LOC100912350	zinc finger protein 507-like	Data merged from RGD:6487181	737654	PROVISIONAL
2012-07-05	LOC100912350	zinc finger protein 507-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2011-07-19	Zfp507	zinc finger protein 507	Znf507	zinc finger protein 507	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Znf507	zinc finger protein 507	zfp507	zinc finger protein 507	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	zfp507	zinc finger protein 507	Znf507_predicted	zinc finger protein 507 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Znf507_predicted	zinc finger protein 507 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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