Fubp3 (far upstream element binding protein 3) - Rat Genome Database

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Gene: Fubp3 (far upstream element binding protein 3) Rattus norvegicus
Analyze
Symbol: Fubp3
Name: far upstream element binding protein 3
RGD ID: 1307004
Description: Predicted to enable mRNA binding activity and single-stranded DNA binding activity. Involved in intracellular mRNA localization. Located in several cellular components, including dendritic shaft; neuronal cell body; and ribosome. Orthologous to human FUBP3 (far upstream element binding protein 3); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: far upstream element (FUSE) binding protein 3; far upstream element-binding protein 3; LOC362106; MAP2 RNA trans-acting protein 2; Marta2; MGC125009
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,253,216 - 35,302,282 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl335,253,306 - 35,302,280 (+)EnsemblGRCr8
mRatBN7.2314,855,527 - 14,904,540 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,855,557 - 14,904,540 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx317,928,756 - 17,975,805 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,513,762 - 26,560,811 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,761,026 - 24,808,028 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0310,220,712 - 10,269,757 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,221,395 - 10,269,693 (-)Ensemblrn6Rnor6.0
Rnor_5.0315,580,074 - 15,629,063 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4310,679,700 - 10,726,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera39,607,318 - 9,654,313 (+)NCBICelera
RGSC_v3.1310,542,001 - 10,622,428 (+)NCBI
Cytogenetic Map3p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
dendritic shaft  (IDA)
neuronal cell body  (IDA)
nucleoplasm  (IDA)
nucleus  (IBA,IEA,ISO)
ribosome  (IDA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. The RNA-binding protein MARTA2 regulates dendritic targeting of MAP2 mRNAs in rat neurons. Zivraj KH, etal., J Neurochem. 2013 Mar;124(5):670-84. doi: 10.1111/jnc.12079. Epub 2013 Jan 20.
Additional References at PubMed
PMID:8940183   PMID:8940189   PMID:12477932   PMID:19087307   PMID:19946888   PMID:22658674   PMID:22681889   PMID:31505169  


Genomics

Comparative Map Data
Fubp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,253,216 - 35,302,282 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl335,253,306 - 35,302,280 (+)EnsemblGRCr8
mRatBN7.2314,855,527 - 14,904,540 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,855,557 - 14,904,540 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx317,928,756 - 17,975,805 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,513,762 - 26,560,811 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,761,026 - 24,808,028 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0310,220,712 - 10,269,757 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,221,395 - 10,269,693 (-)Ensemblrn6Rnor6.0
Rnor_5.0315,580,074 - 15,629,063 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4310,679,700 - 10,726,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera39,607,318 - 9,654,313 (+)NCBICelera
RGSC_v3.1310,542,001 - 10,622,428 (+)NCBI
Cytogenetic Map3p12NCBI
FUBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389130,579,577 - 130,638,352 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9130,578,965 - 130,638,354 (+)Ensemblhg38GRCh38
GRCh379133,454,964 - 133,513,739 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,444,781 - 132,503,560 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349130,484,540 - 130,543,293NCBI
Celera9103,993,491 - 104,052,272 (+)NCBICelera
Cytogenetic Map9q34.11-q34.12NCBI
HuRef9102,941,649 - 103,000,421 (+)NCBIHuRef
CHM1_19133,603,981 - 133,662,726 (+)NCBICHM1_1
T2T-CHM13v2.09142,784,549 - 142,843,289 (+)NCBIT2T-CHM13v2.0
Fubp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,462,655 - 31,507,538 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,462,663 - 31,507,538 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38231,572,643 - 31,617,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,572,651 - 31,617,526 (+)Ensemblmm10GRCm38
MGSCv37231,428,245 - 31,473,039 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36231,394,826 - 31,439,528 (+)NCBIMGSCv36mm8
Celera231,273,754 - 31,318,513 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.84NCBI
Fubp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955513548,139 - 595,479 (+)Ensembl
ChiLan1.0NW_004955513548,202 - 595,427 (+)NCBIChiLan1.0ChiLan1.0
FUBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,713,806 - 8,772,577 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,716,148 - 8,774,919 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09101,703,130 - 101,762,607 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19130,352,000 - 130,411,601 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,353,079 - 130,411,601 (+)EnsemblpanPan2panpan1.1
FUBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,317,955 - 53,370,040 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,317,438 - 53,370,112 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha952,515,974 - 52,569,086 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0954,216,433 - 54,269,784 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl954,216,331 - 54,269,777 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,993,933 - 53,047,288 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0953,314,771 - 53,368,199 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0953,407,807 - 53,460,910 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fubp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,818,352 - 197,869,495 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,586,833 - 17,638,032 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,586,878 - 17,638,028 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FUBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1270,652,450 - 270,702,918 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11270,649,796 - 270,702,920 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21304,574,072 - 304,625,560 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FUBP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1127,504,264 - 7,563,089 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl127,504,295 - 7,563,040 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660797,898,650 - 7,959,190 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fubp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247605,078,698 - 5,122,905 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fubp3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v154,010,084 - 4,056,613 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fubp3
432 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:84
Interacting mature miRNAs:89
Transcripts:ENSRNOT00000021871
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
D3Rat96  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8335,269,893 - 35,270,085 (+)Marker Load Pipeline
mRatBN7.2314,872,149 - 14,872,341 (-)MAPPERmRatBN7.2
Rnor_6.0310,252,909 - 10,253,100NCBIRnor6.0
Rnor_5.0315,612,271 - 15,612,462UniSTSRnor5.0
RGSC_v3.4310,696,213 - 10,696,405RGDRGSC3.4
RGSC_v3.4310,696,214 - 10,696,405UniSTSRGSC3.4
Celera39,623,832 - 9,624,023UniSTS
RGSC_v3.1310,590,708 - 10,590,899RGD
RH 3.4 Map357.1UniSTS
RH 3.4 Map357.1RGD
RH 2.0 Map30.0RGD
SHRSP x BN Map33.4899RGD
Cytogenetic Map3p12UniSTS
RH132868  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,903,565 - 14,903,769 (-)MAPPERmRatBN7.2
Rnor_6.0310,221,483 - 10,221,686NCBIRnor6.0
Rnor_5.0315,580,845 - 15,581,048UniSTSRnor5.0
RGSC_v3.4310,727,628 - 10,727,831UniSTSRGSC3.4
Celera39,655,246 - 9,655,449UniSTS
RH 3.4 Map357.1UniSTS
Cytogenetic Map3p12UniSTS
BE118096  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,888,013 - 14,888,195 (-)MAPPERmRatBN7.2
Rnor_6.0310,237,057 - 10,237,238NCBIRnor6.0
Rnor_5.0315,596,419 - 15,596,600UniSTSRnor5.0
RGSC_v3.4310,712,076 - 10,712,257UniSTSRGSC3.4
Celera39,639,694 - 9,639,875UniSTS
RH 3.4 Map355.8UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001039337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ144645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000021871   ⟹   ENSRNOP00000021871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,253,310 - 35,301,616 (+)Ensembl
mRatBN7.2 Ensembl314,855,557 - 14,903,849 (+)Ensembl
Rnor_6.0 Ensembl310,221,395 - 10,269,693 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl310,222,456 - 10,226,930 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093627   ⟹   ENSRNOP00000076194
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,295,455 - 35,301,616 (+)Ensembl
mRatBN7.2 Ensembl314,898,080 - 14,903,849 (+)Ensembl
Rnor_6.0 Ensembl310,222,290 - 10,226,286 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093750
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl310,223,599 - 10,224,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102580   ⟹   ENSRNOP00000078964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,253,310 - 35,301,616 (+)Ensembl
mRatBN7.2 Ensembl314,855,557 - 14,903,535 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104503   ⟹   ENSRNOP00000089855
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,253,306 - 35,301,615 (+)Ensembl
mRatBN7.2 Ensembl314,855,557 - 14,903,535 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118843   ⟹   ENSRNOP00000096689
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,253,306 - 35,302,280 (+)Ensembl
mRatBN7.2 Ensembl314,855,557 - 14,904,540 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000144831   ⟹   ENSRNOP00000101214
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,253,320 - 35,302,278 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154414   ⟹   ENSRNOP00000107880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,253,310 - 35,301,512 (+)Ensembl
RefSeq Acc Id: NM_001039337   ⟹   NP_001034426
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,380 - 35,300,375 (+)NCBI
mRatBN7.2314,855,636 - 14,902,633 (+)NCBI
Rnor_6.0310,222,619 - 10,269,614 (-)NCBI
Rnor_5.0315,580,074 - 15,629,063 (-)NCBI
RGSC_v3.4310,679,700 - 10,726,695 (+)RGD
Celera39,607,318 - 9,654,313 (+)RGD
Sequence:
RefSeq Acc Id: XM_006233921   ⟹   XP_006233983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,281 - 35,301,615 (+)NCBI
mRatBN7.2314,855,529 - 14,902,844 (+)NCBI
Rnor_6.0310,222,660 - 10,269,756 (-)NCBI
Rnor_5.0315,580,074 - 15,629,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233922   ⟹   XP_006233984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,281 - 35,300,379 (+)NCBI
mRatBN7.2314,855,529 - 14,902,844 (+)NCBI
Rnor_6.0310,222,669 - 10,269,757 (-)NCBI
Rnor_5.0315,580,074 - 15,629,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006233924   ⟹   XP_006233986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,216 - 35,302,282 (+)NCBI
mRatBN7.2314,855,528 - 14,904,540 (+)NCBI
Rnor_6.0310,220,712 - 10,269,757 (-)NCBI
Rnor_5.0315,580,074 - 15,629,063 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039105375   ⟹   XP_038961303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,280 - 35,301,615 (+)NCBI
mRatBN7.2314,855,527 - 14,902,844 (+)NCBI
RefSeq Acc Id: XM_039105376   ⟹   XP_038961304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,493 - 35,301,615 (+)NCBI
mRatBN7.2314,855,749 - 14,902,844 (+)NCBI
RefSeq Acc Id: XM_063284066   ⟹   XP_063140136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,281 - 35,301,672 (+)NCBI
RefSeq Acc Id: XM_063284067   ⟹   XP_063140137
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,280 - 35,302,282 (+)NCBI
RefSeq Acc Id: XM_063284068   ⟹   XP_063140138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,279 - 35,301,615 (+)NCBI
RefSeq Acc Id: XR_010064654
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,253,281 - 35,296,770 (+)NCBI
RefSeq Acc Id: NP_001034426   ⟸   NM_001039337
- UniProtKB: A6JU26 (UniProtKB/TrEMBL),   G3V829 (UniProtKB/TrEMBL),   Q2QC85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233986   ⟸   XM_006233924
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006233983   ⟸   XM_006233921
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006233984   ⟸   XM_006233922
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000021871   ⟸   ENSRNOT00000021871
Ensembl Acc Id: ENSRNOP00000076194   ⟸   ENSRNOT00000093627
RefSeq Acc Id: XP_038961303   ⟸   XM_039105375
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G4A0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961304   ⟸   XM_039105376
- Peptide Label: isoform X7
- UniProtKB: A0A8I6G4A0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096689   ⟸   ENSRNOT00000118843
Ensembl Acc Id: ENSRNOP00000089855   ⟸   ENSRNOT00000104503
Ensembl Acc Id: ENSRNOP00000078964   ⟸   ENSRNOT00000102580
RefSeq Acc Id: XP_063140138   ⟸   XM_063284068
- Peptide Label: isoform X5
- UniProtKB: Q2QC85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140137   ⟸   XM_063284067
- Peptide Label: isoform X4
- UniProtKB: Q2QC85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140136   ⟸   XM_063284066
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000101214   ⟸   ENSRNOT00000144831
Ensembl Acc Id: ENSRNOP00000107880   ⟸   ENSRNOT00000154414
Protein Domains
K Homology

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V829-F1-model_v2 AlphaFold G3V829 1-569 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691974
Promoter ID:EPDNEW_R2499
Type:initiation region
Name:Fubp3_1
Description:far upstream element binding protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0310,269,694 - 10,269,754EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307004 AgrOrtholog
BioCyc Gene G2FUF-50175 BioCyc
Ensembl Genes ENSRNOG00000009139 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021871 ENTREZGENE
  ENSRNOT00000021871.9 UniProtKB/TrEMBL
  ENSRNOT00000093627.3 UniProtKB/TrEMBL
  ENSRNOT00000102580 ENTREZGENE
  ENSRNOT00000102580.2 UniProtKB/TrEMBL
  ENSRNOT00000104503 ENTREZGENE
  ENSRNOT00000104503.2 UniProtKB/TrEMBL
  ENSRNOT00000118843 ENTREZGENE
  ENSRNOT00000118843.2 UniProtKB/TrEMBL
  ENSRNOT00000144831 ENTREZGENE
  ENSRNOT00000144831.1 UniProtKB/TrEMBL
  ENSRNOT00000154414 ENTREZGENE
  ENSRNOT00000154414.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
InterPro DUF1897 UniProtKB/TrEMBL
  IPR004087 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  KH_type_1 UniProtKB/TrEMBL
KEGG Report rno:362106 UniProtKB/TrEMBL
NCBI Gene 362106 ENTREZGENE
PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN UniProtKB/TrEMBL
Pfam DUF1897 UniProtKB/TrEMBL
  KH_1 UniProtKB/TrEMBL
PhenoGen Fubp3 PhenoGen
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009139 RatGTEx
SMART SM00322 UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A1W2Q698_RAT UniProtKB/TrEMBL
  A0A8I6ACQ5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATS5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G4A0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L8B7_RAT UniProtKB/TrEMBL
  A0ABK0LRK4_RAT UniProtKB/TrEMBL
  A6JU26 ENTREZGENE, UniProtKB/TrEMBL
  G3V829 ENTREZGENE, UniProtKB/TrEMBL
  Q2QC85 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Fubp3  far upstream element binding protein 3  Fubp3  far upstream element (FUSE) binding protein 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 Fubp3  far upstream element (FUSE) binding protein 3  Fubp3_predicted  far upstream element (FUSE) binding protein 3 (predicted)  Symbol and Name status set to approved 1299863 APPROVED
2005-01-12 Fubp3_predicted  far upstream element (FUSE) binding protein 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED