Trim55 (tripartite motif-containing 55) - Rat Genome Database

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Gene: Trim55 (tripartite motif-containing 55) Rattus norvegicus
Analyze
Symbol: Trim55
Name: tripartite motif-containing 55
RGD ID: 1306943
Description: Predicted to enable identical protein binding activity; protein-macromolecule adaptor activity; and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of non-canonical NF-kappaB signal transduction and protein K48-linked ubiquitination. Predicted to act upstream of or within with a positive effect on diapedesis and leukocyte migration involved in inflammatory response. Predicted to act upstream of or within with a negative effect on macrophage migration. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human TRIM55 (tripartite motif containing 55); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC365751; MURF-2; muRF2; muscle-specific RING finger protein 2; ring finger protein 29; Rnf29; tripartite motif-containing protein 55
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82104,016,361 - 104,058,302 (+)NCBIGRCr8
mRatBN7.22102,100,229 - 102,142,173 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2102,088,443 - 102,142,168 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2108,624,508 - 108,673,252 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02106,745,640 - 106,794,384 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02101,713,099 - 101,763,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02104,416,972 - 104,459,117 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2104,416,972 - 104,459,107 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02124,140,032 - 124,182,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42104,721,413 - 104,763,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12104,666,374 - 104,708,096 (+)NCBI
Celera297,493,957 - 97,535,909 (+)NCBICelera
Cytogenetic Map2q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12414993   PMID:12477932   PMID:15199100   PMID:15489334   PMID:15802564   PMID:21185285   PMID:22493164   PMID:25868327   PMID:26452100   PMID:32463795  


Genomics

Comparative Map Data
Trim55
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82104,016,361 - 104,058,302 (+)NCBIGRCr8
mRatBN7.22102,100,229 - 102,142,173 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2102,088,443 - 102,142,168 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2108,624,508 - 108,673,252 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02106,745,640 - 106,794,384 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02101,713,099 - 101,763,541 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02104,416,972 - 104,459,117 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2104,416,972 - 104,459,107 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02124,140,032 - 124,182,037 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42104,721,413 - 104,763,136 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12104,666,374 - 104,708,096 (+)NCBI
Celera297,493,957 - 97,535,909 (+)NCBICelera
Cytogenetic Map2q24NCBI
TRIM55
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38866,113,351 - 66,175,485 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl866,126,896 - 66,175,485 (+)EnsemblGRCh38hg38GRCh38
GRCh37867,039,364 - 67,087,720 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36867,201,832 - 67,250,274 (+)NCBINCBI36Build 36hg18NCBI36
Celera863,030,998 - 63,079,433 (+)NCBICelera
Cytogenetic Map8q13.1NCBI
HuRef862,529,431 - 62,577,875 (+)NCBIHuRef
CHM1_1867,093,935 - 67,142,373 (+)NCBICHM1_1
T2T-CHM13v2.0866,538,238 - 66,601,172 (+)NCBIT2T-CHM13v2.0
Trim55
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39319,698,591 - 19,746,748 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl319,698,638 - 19,746,585 (+)EnsemblGRCm39 Ensembl
GRCm38319,644,344 - 19,692,584 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl319,644,474 - 19,692,421 (+)EnsemblGRCm38mm10GRCm38
MGSCv37319,544,460 - 19,591,599 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36319,836,611 - 19,883,750 (+)NCBIMGSCv36mm8
Celera319,637,248 - 19,684,700 (+)NCBICelera
Cytogenetic Map3A2NCBI
cM Map35.65NCBI
Trim55
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544412,992,362 - 13,034,621 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544412,992,362 - 13,034,621 (-)NCBIChiLan1.0ChiLan1.0
TRIM55
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2781,840,314 - 81,907,943 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1857,484,344 - 57,548,891 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0862,651,139 - 62,713,882 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1864,319,423 - 64,381,352 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl864,319,423 - 64,381,352 (+)Ensemblpanpan1.1panPan2
TRIM55
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12915,786,423 - 15,831,059 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2915,786,433 - 15,830,402 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2916,101,222 - 16,145,848 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02915,865,064 - 15,909,688 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2915,865,071 - 15,910,988 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12915,894,673 - 15,939,274 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02915,997,002 - 16,041,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02916,252,730 - 16,297,343 (+)NCBIUU_Cfam_GSD_1.0
Trim55
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530366,966,659 - 67,023,035 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364967,762,531 - 7,816,359 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364967,762,471 - 7,816,359 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM55
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl468,487,120 - 68,530,889 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1468,487,249 - 68,530,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2474,655,441 - 74,698,465 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM55
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1861,996,908 - 62,052,053 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl862,002,042 - 62,051,150 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603979,460,973 - 79,509,929 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trim55
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474425,197,335 - 25,246,856 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474425,197,581 - 25,246,857 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trim55
239 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:360
Count of miRNA genes:202
Interacting mature miRNAs:239
Transcripts:ENSRNOT00000017125
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)276539322150540526Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)276539322102785628Rat
61465Bp13Blood pressure QTL 133.3blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)276539322102785628Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)278665619219826953Rat
1598862Glom9Glomerulus QTL 93.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)292337601137337601Rat
1598863Cm65Cardiac mass QTL 652.3heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)292337601137337601Rat
1598865Bp296Blood pressure QTL 2962.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)281018907126018907Rat
2300165Bmd49Bone mineral density QTL 494.80.0001lumbar vertebra mineral mass (VT:0010511)bone mineral density (CMO:0001226)288862519133862519Rat
2300170Bmd45Bone mineral density QTL 4512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
2300185Bmd46Bone mineral density QTL 468.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)288862519133862519Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)243162366111362592Rat
1578772Stresp14Stress response QTL 1450.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)282345893130923501Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
2299162Iddm32Insulin dependent diabetes mellitus QTL 322.36blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)278665616143657569Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)276539322202447032Rat
61392Bp6Blood pressure QTL 67arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)280270434125270434Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
7207808Bmd89Bone mineral density QTL 894.1femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)288862519133862519Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)281689826221035911Rat

Markers in Region
D2Rat278  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22102,104,121 - 102,104,430 (+)MAPPERmRatBN7.2
mRatBN7.22102,104,314 - 102,104,430 (+)MAPPERmRatBN7.2
Rnor_6.02104,421,261 - 104,421,376NCBIRnor6.0
Rnor_6.02104,421,037 - 104,421,376NCBIRnor6.0
Rnor_5.02124,144,126 - 124,144,465UniSTSRnor5.0
Rnor_5.02124,144,350 - 124,144,465UniSTSRnor5.0
RGSC_v3.42104,725,477 - 104,725,593RGDRGSC3.4
RGSC_v3.42104,725,478 - 104,725,593UniSTSRGSC3.4
RGSC_v3.12104,670,439 - 104,670,555RGD
Celera297,498,066 - 97,498,185UniSTS
SHRSP x BN Map236.5198UniSTS
SHRSP x BN Map236.5198RGD
FHH x ACI Map248.8399RGD
Cytogenetic Map2q24UniSTS
RH139159  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22102,141,308 - 102,141,428 (+)MAPPERmRatBN7.2
Rnor_6.02104,458,253 - 104,458,372NCBIRnor6.0
Rnor_5.02124,181,173 - 124,181,292UniSTSRnor5.0
RGSC_v3.42104,762,277 - 104,762,396UniSTSRGSC3.4
Celera297,535,050 - 97,535,169UniSTS
RH 3.4 Map2622.4UniSTS
Cytogenetic Map2q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 8 11 3 8
Low 16 13 14 13 28 2 22 8
Below cutoff 1 32 21 5 21 46 22 15 2

Sequence


RefSeq Acc Id: ENSRNOT00000017125   ⟹   ENSRNOP00000017125
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2102,100,231 - 102,142,168 (+)Ensembl
Rnor_6.0 Ensembl2104,416,972 - 104,459,107 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094830   ⟹   ENSRNOP00000084028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2102,100,242 - 102,142,162 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116649   ⟹   ENSRNOP00000079787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2102,088,443 - 102,125,377 (+)Ensembl
RefSeq Acc Id: NM_001012218   ⟹   NP_001012218
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,016,381 - 104,058,297 (+)NCBI
mRatBN7.22102,100,249 - 102,142,168 (+)NCBI
Rnor_6.02104,416,972 - 104,459,112 (+)NCBI
Rnor_5.02124,140,032 - 124,182,037 (+)NCBI
RGSC_v3.42104,721,413 - 104,763,136 (+)RGD
Celera297,493,957 - 97,535,909 (+)RGD
Sequence:
RefSeq Acc Id: XM_006232181   ⟹   XP_006232243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,016,361 - 104,058,302 (+)NCBI
mRatBN7.22102,100,229 - 102,142,173 (+)NCBI
Rnor_6.02104,417,100 - 104,458,190 (+)NCBI
Rnor_5.02124,140,032 - 124,182,037 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006232182   ⟹   XP_006232244
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82104,016,361 - 104,058,302 (+)NCBI
mRatBN7.22102,100,229 - 102,142,173 (+)NCBI
Rnor_6.02104,417,100 - 104,459,117 (+)NCBI
Rnor_5.02124,140,032 - 124,182,037 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001012218   ⟸   NM_001012218
- UniProtKB: Q5PQN5 (UniProtKB/Swiss-Prot),   A6IHB9 (UniProtKB/TrEMBL),   A0A8L2UJ67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232243   ⟸   XM_006232181
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A0E8 (UniProtKB/TrEMBL),   A0A8I5ZNU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232244   ⟸   XM_006232182
- Peptide Label: isoform X2
- UniProtKB: A0A8L2UJ67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000017125   ⟸   ENSRNOT00000017125
RefSeq Acc Id: ENSRNOP00000084028   ⟸   ENSRNOT00000094830
RefSeq Acc Id: ENSRNOP00000079787   ⟸   ENSRNOT00000116649
Protein Domains
B box-type   COS   RING-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5PQN5-F1-model_v2 AlphaFold Q5PQN5 1-545 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306943 AgrOrtholog
BioCyc Gene G2FUF-53618 BioCyc
Ensembl Genes ENSRNOG00000012723 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00065019641 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000017125 ENTREZGENE
  ENSRNOT00000017125.6 UniProtKB/TrEMBL
  ENSRNOT00000094830 ENTREZGENE
  ENSRNOT00000094830.1 UniProtKB/TrEMBL
  ENSRNOT00000116649.1 UniProtKB/TrEMBL
  ENSRNOT00065033105 UniProtKB/Swiss-Prot
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7192411 IMAGE-MGC_LOAD
InterPro COS_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf-RING_LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:365751 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94677 IMAGE-MGC_LOAD
NCBI Gene 365751 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRIPARTITE MOTIF-CONTAINING PROTEIN 55 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_UBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim55 PhenoGen
PROSITE COS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012723 RatGTEx
  ENSRNOG00065019641 RatGTEx
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZNU7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0E8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UJ67 ENTREZGENE, UniProtKB/TrEMBL
  A6IHB9 ENTREZGENE, UniProtKB/TrEMBL
  Q5PQN5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Trim55  tripartite motif-containing 55  Rnf29  ring finger protein 29  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Rnf29  ring finger protein 29  Rnf29_predicted  ring finger protein 29 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rnf29_predicted  ring finger protein 29 (predicted)      Symbol and Name status set to approved 70820 APPROVED