Spdl1 (spindle apparatus coiled-coil protein 1) - Rat Genome Database

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Gene: Spdl1 (spindle apparatus coiled-coil protein 1) Rattus norvegicus
Analyze
Symbol: Spdl1
Name: spindle apparatus coiled-coil protein 1
RGD ID: 1306908
Description: Predicted to enable enzyme binding activity and kinetochore binding activity. Predicted to be involved in several processes, including establishment of mitotic spindle orientation; mitotic metaphase chromosome alignment; and protein localization to kinetochore. Predicted to be located in nucleus. Predicted to be part of outer kinetochore. Predicted to be active in spindle pole. Orthologous to human SPDL1 (spindle apparatus coiled-coil protein 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Ccdc99; coiled-coil domain containing 99; coiled-coil domain-containing protein 99; LOC303037; MGC124977; protein Spindly; RGD1306908; similar to RIKEN cDNA 2600001J17; spindle apparatus coiled-coil domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,773,456 - 19,798,341 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1019,773,457 - 19,798,297 (-)EnsemblGRCr8
mRatBN7.21019,269,125 - 19,294,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1019,269,127 - 19,294,127 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1024,025,401 - 24,050,230 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01023,513,918 - 23,538,747 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01018,993,397 - 19,018,241 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01019,628,070 - 19,652,914 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1019,628,258 - 19,652,898 (-)Ensemblrn6Rnor6.0
Rnor_5.01019,504,669 - 19,529,513 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41019,684,827 - 19,709,881 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1018,901,001 - 18,925,678 (-)NCBICelera
RGSC_v3.11019,686,195 - 19,710,929 (-)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1-dichloroethene  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3-methylcholanthrene  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dibutyl phthalate  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
GSK-J4  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
lucanthone  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
menadione  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
methylparaben  (ISO)
ochratoxin A  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP)
PCB138  (ISO)
phenobarbital  (ISO)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
rac-lactic acid  (ISO)
resveratrol  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
tetrahydropalmatine  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA)
kinetochore  (IEA)
nucleus  (IEA,ISO,ISS)
outer kinetochore  (IBA,IEA,ISO,ISS)
spindle pole  (IBA,IEA,ISO,ISS)

Molecular Function
enzyme binding  (IEA,ISO)
kinetochore binding  (IBA,IEA,ISO,ISS)
protein binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:19468067   PMID:23382074  


Genomics

Comparative Map Data
Spdl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,773,456 - 19,798,341 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1019,773,457 - 19,798,297 (-)EnsemblGRCr8
mRatBN7.21019,269,125 - 19,294,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1019,269,127 - 19,294,127 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1024,025,401 - 24,050,230 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01023,513,918 - 23,538,747 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01018,993,397 - 19,018,241 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01019,628,070 - 19,652,914 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1019,628,258 - 19,652,898 (-)Ensemblrn6Rnor6.0
Rnor_5.01019,504,669 - 19,529,513 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41019,684,827 - 19,709,881 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1018,901,001 - 18,925,678 (-)NCBICelera
RGSC_v3.11019,686,195 - 19,710,929 (-)NCBI
Cytogenetic Map10q12NCBI
SPDL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385169,583,773 - 169,604,778 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5169,583,632 - 169,604,778 (+)Ensemblhg38GRCh38
GRCh375169,010,777 - 169,031,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365168,943,216 - 168,964,360 (+)NCBIBuild 36Build 36hg18NCBI36
Celera5165,042,230 - 165,063,368 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5164,109,127 - 164,130,272 (+)NCBIHuRef
CHM1_15168,443,114 - 168,464,262 (+)NCBICHM1_1
T2T-CHM13v2.05170,119,147 - 170,140,150 (+)NCBIT2T-CHM13v2.0
Spdl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,700,012 - 34,724,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,700,017 - 34,724,468 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381134,809,185 - 34,833,665 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,809,190 - 34,833,641 (-)Ensemblmm10GRCm38
MGSCv371134,622,687 - 34,647,143 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361134,652,613 - 34,677,047 (-)NCBIMGSCv36mm8
Celera1138,586,433 - 38,610,792 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.9NCBI
Spdl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540822,594,776 - 22,628,429 (+)Ensembl
ChiLan1.0NW_00495540822,590,474 - 22,619,168 (+)NCBIChiLan1.0ChiLan1.0
SPDL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24164,746,513 - 164,765,573 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15162,886,058 - 162,905,247 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05164,949,009 - 164,967,957 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15171,710,108 - 171,729,148 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5171,710,108 - 171,729,148 (+)EnsemblpanPan2panpan1.1
SPDL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1442,214,997 - 42,235,282 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl441,780,436 - 42,235,177 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha442,167,193 - 42,187,383 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0442,627,079 - 42,647,227 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl442,626,845 - 42,647,193 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1442,408,253 - 42,428,373 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0442,595,075 - 42,615,189 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0443,106,170 - 43,126,332 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Spdl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,227,642 - 116,229,278 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936688840,345 - 841,808 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPDL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1654,277,052 - 54,303,544 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11654,276,943 - 54,303,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21658,844,321 - 58,870,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPDL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12371,795,470 - 71,816,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2371,795,563 - 71,816,452 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660346,848,945 - 6,869,953 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spdl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473320,326,893 - 20,350,923 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473320,326,565 - 20,350,937 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Spdl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v197,483,073 - 7,505,301 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Spdl1
203 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:242
Count of miRNA genes:166
Interacting mature miRNAs:189
Transcripts:ENSRNOT00000009648
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101577675460776754Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)101465354159653541Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101553301273695498Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
737823Alc12Alcohol consumption QTL 124.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101774978420796344Rat
61332Eau3Experimental allergic uveoretinitis QTL 30.004uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)101803578263035782Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
2298495Eae23Experimental allergic encephalomyelitis QTL 2316.93nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)101617552561175525Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101866841963668419Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101803578263035782Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101499153586964295Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014991535107713808Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014991535107556066Rat

Markers in Region
RH139388  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21019,269,503 - 19,269,613 (+)MAPPERmRatBN7.2
Rnor_6.01019,628,449 - 19,628,558NCBIRnor6.0
Rnor_5.01019,505,048 - 19,505,157UniSTSRnor5.0
RGSC_v3.41019,685,009 - 19,685,118UniSTSRGSC3.4
Celera1018,901,183 - 18,901,292UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 161 91 90 59 91 59 6 354 190 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009648   ⟹   ENSRNOP00000009648
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1019,773,457 - 19,798,297 (-)Ensembl
mRatBN7.2 Ensembl1019,269,127 - 19,294,127 (-)Ensembl
Rnor_6.0 Ensembl1019,628,258 - 19,652,898 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137459   ⟹   ENSRNOP00000100187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1019,773,457 - 19,798,297 (-)Ensembl
RefSeq Acc Id: NM_001034138   ⟹   NP_001029310
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81019,773,456 - 19,798,297 (-)NCBI
mRatBN7.21019,269,322 - 19,294,163 (-)NCBI
Rnor_6.01019,628,267 - 19,652,873 (-)NCBI
Rnor_5.01019,504,669 - 19,529,513 (-)NCBI
RGSC_v3.41019,684,827 - 19,709,881 (-)RGD
Celera1018,901,001 - 18,925,678 (-)RGD
Sequence:
RefSeq Acc Id: XM_006246104   ⟹   XP_006246166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81019,773,456 - 19,798,341 (-)NCBI
mRatBN7.21019,269,125 - 19,294,213 (-)NCBI
Rnor_6.01019,628,070 - 19,652,914 (-)NCBI
Rnor_5.01019,504,669 - 19,529,513 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001029310 (Get FASTA)   NCBI Sequence Viewer  
  XP_006246166 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI05813 (Get FASTA)   NCBI Sequence Viewer  
  EDM04088 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009648
  ENSRNOP00000009648.4
GenBank Protein Q3KR99 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001029310   ⟸   NM_001034138
- UniProtKB: Q3KR99 (UniProtKB/Swiss-Prot),   A6HDI3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006246166   ⟸   XM_006246104
- Peptide Label: isoform X1
- UniProtKB: Q3KR99 (UniProtKB/Swiss-Prot),   A6HDI3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009648   ⟸   ENSRNOT00000009648
Ensembl Acc Id: ENSRNOP00000100187   ⟸   ENSRNOT00000137459

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3KR99-F1-model_v2 AlphaFold Q3KR99 1-597 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697101
Promoter ID:EPDNEW_R7625
Type:multiple initiation site
Name:Spdl1_1
Description:spindle apparatus coiled-coil protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01019,652,899 - 19,652,959EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306908 AgrOrtholog
BioCyc Gene G2FUF-25583 BioCyc
Ensembl Genes ENSRNOG00000007292 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009648 ENTREZGENE
  ENSRNOT00000009648.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7112484 IMAGE-MGC_LOAD
InterPro SPDLY_chordates UniProtKB/Swiss-Prot
  Spindly/BICDR_Dynein_Adapter UniProtKB/Swiss-Prot
KEGG Report rno:303037 UniProtKB/Swiss-Prot
MGC_CLONE MGC:124977 IMAGE-MGC_LOAD
NCBI Gene 303037 ENTREZGENE
PANTHER BICD FAMILY-LIKE CARGO ADAPTER UniProtKB/Swiss-Prot
  PROTEIN SPINDLY UniProtKB/Swiss-Prot
PhenoGen Spdl1 PhenoGen
RatGTEx ENSRNOG00000007292 RatGTEx
UniProt A0ABK0LFD6_RAT UniProtKB/TrEMBL
  A6HDI3 ENTREZGENE, UniProtKB/TrEMBL
  Q3KR99 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-05 Spdl1  spindle apparatus coiled-coil protein 1  Ccdc99  coiled-coil domain containing 99  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ccdc99  coiled-coil domain containing 99  RGD1306908  similar to RIKEN cDNA 2600001J17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306908  similar to RIKEN cDNA 2600001J17  RGD1306908_predicted  similar to RIKEN cDNA 2600001J17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306908_predicted  similar to RIKEN cDNA 2600001J17 (predicted)  LOC303037_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC303037_predicted  similar to RIKEN cDNA 2600001J17 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL