Fbxl5 (F-box and leucine-rich repeat protein 5) - Rat Genome Database

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Gene: Fbxl5 (F-box and leucine-rich repeat protein 5) Rattus norvegicus
Analyze
Symbol: Fbxl5
Name: F-box and leucine-rich repeat protein 5
RGD ID: 1306887
Description: Predicted to enable iron ion binding activity. Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; intracellular iron ion homeostasis; and protein ubiquitination. Predicted to act upstream of or within multicellular organismal-level iron ion homeostasis and positive regulation of protein catabolic process. Predicted to be located in perinuclear region of cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL5 (F-box and leucine rich repeat protein 5); PARTICIPATES IN iron homeostasis pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F-box/LRR-repeat protein 5; LOC305424
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,517,452 - 71,559,850 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1471,480,270 - 71,560,652 (+)EnsemblGRCr8
mRatBN7.21467,305,109 - 67,347,383 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,267,801 - 67,347,383 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1471,715,434 - 71,753,684 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01472,989,247 - 73,027,495 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01469,425,876 - 69,464,125 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01471,852,649 - 71,891,143 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,852,682 - 71,891,143 (+)Ensemblrn6Rnor6.0
Rnor_5.01471,880,703 - 71,918,708 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41472,471,063 - 72,510,384 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1466,264,892 - 66,303,083 (+)NCBICelera
RGSC_v3.11472,473,343 - 72,512,820 (+)NCBI
Cytogenetic Map14q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Cellular iron uptake, trafficking and metabolism: Key molecules and mechanisms and their roles in disease. Lane DJ, etal., Biochim Biophys Acta. 2015 May;1853(5):1130-44. doi: 10.1016/j.bbamcr.2015.01.021. Epub 2015 Feb 4.
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17532294   PMID:19028597   PMID:19762596   PMID:19762597   PMID:21907140  


Genomics

Comparative Map Data
Fbxl5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,517,452 - 71,559,850 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1471,480,270 - 71,560,652 (+)EnsemblGRCr8
mRatBN7.21467,305,109 - 67,347,383 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,267,801 - 67,347,383 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1471,715,434 - 71,753,684 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01472,989,247 - 73,027,495 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01469,425,876 - 69,464,125 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01471,852,649 - 71,891,143 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,852,682 - 71,891,143 (+)Ensemblrn6Rnor6.0
Rnor_5.01471,880,703 - 71,918,708 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41472,471,063 - 72,510,384 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1466,264,892 - 66,303,083 (+)NCBICelera
RGSC_v3.11472,473,343 - 72,512,820 (+)NCBI
Cytogenetic Map14q21NCBI
FBXL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,604,381 - 15,681,569 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38415,507,612 - 15,514,707 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,604,381 - 15,681,679 (-)Ensemblhg38GRCh38
GRCh37415,606,004 - 15,656,980 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,215,252 - 15,266,111 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34415,282,422 - 15,333,282NCBI
Celera416,069,952 - 16,121,669 (-)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef414,956,302 - 15,007,653 (-)NCBIHuRef
CHM1_1415,603,953 - 15,655,030 (-)NCBICHM1_1
T2T-CHM13v2.0415,586,272 - 15,663,882 (-)NCBIT2T-CHM13v2.0
Fbxl5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,901,958 - 43,939,529 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl543,901,957 - 43,978,980 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38543,744,618 - 43,782,149 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,744,615 - 43,821,638 (-)Ensemblmm10GRCm38
MGSCv37544,135,857 - 44,173,388 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36544,044,154 - 44,070,344 (-)NCBIMGSCv36mm8
Celera541,173,924 - 41,211,343 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.81NCBI
Fbxl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554808,344,019 - 8,398,650 (+)Ensembl
ChiLan1.0NW_0049554808,360,957 - 8,397,903 (+)NCBIChiLan1.0ChiLan1.0
FBXL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2315,891,899 - 15,948,950 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,089,811 - 16,146,466 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,050,909 - 10,107,573 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1415,348,977 - 15,430,631 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,348,977 - 15,430,631 (-)EnsemblpanPan2panpan1.1
FBXL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,683,770 - 64,727,161 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,575,348 - 64,726,931 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha367,201,038 - 67,244,528 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0365,161,645 - 65,205,900 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,161,829 - 65,238,030 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,650,616 - 64,694,045 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,854,792 - 64,898,216 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,214,973 - 65,258,445 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fbxl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,568,209 - 58,611,235 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647712,279,541 - 12,313,007 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647712,279,521 - 12,312,927 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl810,913,106 - 10,961,306 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1810,915,526 - 10,987,374 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,563,435 - 10,609,509 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FBXL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12734,575,889 - 34,682,308 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2734,580,426 - 34,625,036 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604781,292,762 - 81,362,289 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxl5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475516,197,242 - 16,245,653 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475516,197,223 - 16,245,108 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fbxl5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11161,979,257 - 62,017,226 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fbxl5
310 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:270
Count of miRNA genes:162
Interacting mature miRNAs:199
Transcripts:ENSRNOT00000064636
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143802371083023710Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143900944484009444Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143123808072970315Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143067446985041098Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143802371083023710Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143802371083023710Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143802371083023710Rat

Markers in Region
RH136893  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21467,347,158 - 67,347,308 (+)MAPPERmRatBN7.2
Rnor_6.01471,890,919 - 71,891,068NCBIRnor6.0
Rnor_5.01471,918,484 - 71,918,633UniSTSRnor5.0
RGSC_v3.41472,510,160 - 72,510,309UniSTSRGSC3.4
Celera1466,302,859 - 66,303,008UniSTS
Cytogenetic Map14q21UniSTS
RH138397  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21467,343,809 - 67,343,983 (+)MAPPERmRatBN7.2
Rnor_6.01471,887,570 - 71,887,743NCBIRnor6.0
Rnor_5.01471,915,135 - 71,915,308UniSTSRnor5.0
RGSC_v3.41472,506,816 - 72,506,989UniSTSRGSC3.4
Celera1466,299,510 - 66,299,683UniSTS
Cytogenetic Map14q21UniSTS
FBXL5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21467,331,363 - 67,332,330 (+)MAPPERmRatBN7.2
Rnor_6.01471,874,875 - 71,875,841NCBIRnor6.0
Rnor_5.01471,902,883 - 71,903,849UniSTSRnor5.0
RGSC_v3.41472,494,220 - 72,495,186UniSTSRGSC3.4
Celera1466,287,037 - 66,288,001UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000064636   ⟹   ENSRNOP00000062042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,521,589 - 71,559,844 (+)Ensembl
mRatBN7.2 Ensembl1467,309,220 - 67,347,383 (+)Ensembl
Rnor_6.0 Ensembl1471,852,730 - 71,891,143 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078326   ⟹   ENSRNOP00000068659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,521,594 - 71,559,848 (+)Ensembl
mRatBN7.2 Ensembl1467,309,120 - 67,347,374 (+)Ensembl
Rnor_6.0 Ensembl1471,852,682 - 71,890,634 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101227   ⟹   ENSRNOP00000093757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,517,461 - 71,559,849 (+)Ensembl
mRatBN7.2 Ensembl1467,304,928 - 67,347,383 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103550   ⟹   ENSRNOP00000081384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,480,270 - 71,560,652 (+)Ensembl
mRatBN7.2 Ensembl1467,267,801 - 67,347,383 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000126192   ⟹   ENSRNOP00000101249
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,517,458 - 71,560,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000172538   ⟹   ENSRNOP00000110832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1471,521,588 - 71,560,652 (+)Ensembl
RefSeq Acc Id: NM_001401432   ⟹   NP_001388361
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,521,599 - 71,559,850 (+)NCBI
mRatBN7.21467,309,132 - 67,347,383 (+)NCBI
RefSeq Acc Id: XM_017599194   ⟹   XP_017454683
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,530,252 - 71,559,850 (+)NCBI
mRatBN7.21467,317,775 - 67,347,383 (+)NCBI
Rnor_6.01471,861,326 - 71,891,143 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599195   ⟹   XP_017454684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,532,303 - 71,559,850 (+)NCBI
mRatBN7.21467,317,797 - 67,347,383 (+)NCBI
Rnor_6.01471,861,326 - 71,891,143 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091944   ⟹   XP_038947872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,517,452 - 71,559,850 (+)NCBI
mRatBN7.21467,305,109 - 67,347,383 (+)NCBI
RefSeq Acc Id: XM_039091946   ⟹   XP_038947874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,521,566 - 71,544,797 (+)NCBI
mRatBN7.21467,309,097 - 67,332,340 (+)NCBI
RefSeq Acc Id: XM_063273139   ⟹   XP_063129209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,517,652 - 71,559,850 (+)NCBI
RefSeq Acc Id: XM_063273140   ⟹   XP_063129210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,521,564 - 71,553,590 (+)NCBI
RefSeq Acc Id: XP_017454683   ⟸   XM_017599194
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZSP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454684   ⟸   XM_017599195
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZSP0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068659   ⟸   ENSRNOT00000078326
Ensembl Acc Id: ENSRNOP00000062042   ⟸   ENSRNOT00000064636
RefSeq Acc Id: XP_038947872   ⟸   XM_039091944
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AK75 (UniProtKB/TrEMBL),   A0A8I5ZSP0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947874   ⟸   XM_039091946
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000081384   ⟸   ENSRNOT00000103550
Ensembl Acc Id: ENSRNOP00000093757   ⟸   ENSRNOT00000101227
RefSeq Acc Id: NP_001388361   ⟸   NM_001401432
- UniProtKB: A0A0G2JTC9 (UniProtKB/TrEMBL),   A0A8I5ZSP0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129209   ⟸   XM_063273139
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZSP0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129210   ⟸   XM_063273140
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000101249   ⟸   ENSRNOT00000126192
Ensembl Acc Id: ENSRNOP00000110832   ⟸   ENSRNOT00000172538
Protein Domains
F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTC9-F1-model_v2 AlphaFold A0A0G2JTC9 1-690 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699356
Promoter ID:EPDNEW_R9879
Type:initiation region
Name:Fbxl5_1
Description:F-box and leucine-rich repeat protein 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01471,852,710 - 71,852,770EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306887 AgrOrtholog
BioCyc Gene G2FUF-15507 BioCyc
Ensembl Genes ENSRNOG00000005261 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000064636.4 UniProtKB/TrEMBL
  ENSRNOT00000078326.3 UniProtKB/TrEMBL
  ENSRNOT00000101227 ENTREZGENE
  ENSRNOT00000101227.2 UniProtKB/TrEMBL
  ENSRNOT00000103550.2 UniProtKB/TrEMBL
  ENSRNOT00000126192 ENTREZGENE
  ENSRNOT00000126192.1 UniProtKB/TrEMBL
  ENSRNOT00000172538 ENTREZGENE
  ENSRNOT00000172538.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
  nmb1532 protein domain like UniProtKB/TrEMBL
InterPro F-box_dom_cyclin-like UniProtKB/TrEMBL
  F-box_dom_like UniProtKB/TrEMBL
  F-box_LRR-repeat UniProtKB/TrEMBL
  FBXO4 UniProtKB/TrEMBL
  Haemerythrin/HHE_cat-bd_motif UniProtKB/TrEMBL
  Hr_FBXL5 UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_Cys-con_subtyp UniProtKB/TrEMBL
NCBI Gene 305424 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 4 UniProtKB/TrEMBL
  F-BOX/LRR-REPEAT PROTEIN 5 UniProtKB/TrEMBL
  MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B UniProtKB/TrEMBL
  SI:DKEY-12E7.1 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam F-box-like UniProtKB/TrEMBL
  Hemerythrin UniProtKB/TrEMBL
  LRR_6 UniProtKB/TrEMBL
PhenoGen Fbxl5 PhenoGen
PROSITE FBOX UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005261 RatGTEx
SMART FBOX UniProtKB/TrEMBL
  LRR_CC UniProtKB/TrEMBL
Superfamily-SCOP F-box_dom_Skp2-like UniProtKB/TrEMBL
  RNI-like UniProtKB/TrEMBL
UniProt A0A0G2JTC9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZSP0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AK75 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LIZ5_RAT UniProtKB/TrEMBL
  A0ABK0LJ68_RAT UniProtKB/TrEMBL
  D3ZA08_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Fbxl5  F-box and leucine-rich repeat protein 5   Fbxl5_predicted  F-box and leucine-rich repeat protein 5 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Fbxl5_predicted  F-box and leucine-rich repeat protein 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED