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Gene: Troap (trophinin associated protein) Rattus norvegicus

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Symbol:

Troap

Name:

trophinin associated protein

RGD ID:

1306870

Description:

Orthologous to human TROAP (trophinin associated protein); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC300219; tastin; trophinin associated protein (tastin)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TROAP (trophinin associated protein)	RGD	RGD
Mus musculus (house mouse):	Troap (trophinin associated protein)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Troap (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TROAP (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TROAP (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Troap (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TROAP (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TROAP (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Troap (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Troap (trophinin associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TROAP (trophinin associated protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Troap (trophinin associated protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-156j22.4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Danio rerio (zebrafish):	si:ch211-156j22.4	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	troap	Alliance	DIOPT (OrthoFinder\|OrthoInspector)
Xenopus tropicalis (tropical clawed frog):	troap	Alliance	DIOPT (OrthoFinder\|OrthoInspector)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	132,111,892 - 132,121,296 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	132,113,433 - 132,121,294 (+)	Ensembl				GRCr8
mRatBN7.2	7	130,233,534 - 130,242,369 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	130,234,544 - 130,242,365 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	132,044,775 - 132,052,569 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	134,270,349 - 134,278,143 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	134,182,856 - 134,190,650 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	140,758,576 - 140,766,423 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	140,758,615 - 140,766,423 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	115,263,516 - 115,271,364 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	137,852,698 - 137,860,157 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	126,719,296 - 126,727,104 (+)	NCBI		Celera
RGSC_v3.1	7	137,934,261 - 137,936,594 (+)	NCBI
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

hepatocellular carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP,ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

caffeine (ISO)

calcitriol (ISO)

chlordecone (ISO)

chromium(6+) (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

Cuprizon (EXP)

DDE (ISO)

dexamethasone (ISO)

diallyl trisulfide (ISO)

dioxygen (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fipronil (EXP)

FR900359 (ISO)

furan (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

leflunomide (EXP,ISO)

lidocaine (EXP)

Moniliformin (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monobenzyl phthalate (ISO)

Monobutylphthalate (ISO)

monoethyl phthalate (ISO)

N-acetyl-L-cysteine (EXP)

N-nitrosodiethylamine (EXP)

N-Nitrosopyrrolidine (ISO)

nitrofen (EXP)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

palbociclib (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

propanal (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamibarotene (ISO)

temozolomide (ISO)

testosterone (EXP,ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trimellitic anhydride (ISO)

trovafloxacin (ISO)

urethane (ISO)

valproic acid (ISO)

vanadium atom (ISO)

vanadium(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Troap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	132,111,892 - 132,121,296 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	132,113,433 - 132,121,294 (+)	Ensembl				GRCr8
mRatBN7.2	7	130,233,534 - 130,242,369 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	130,234,544 - 130,242,365 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	132,044,775 - 132,052,569 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	134,270,349 - 134,278,143 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	134,182,856 - 134,190,650 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	140,758,576 - 140,766,423 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	140,758,615 - 140,766,423 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	115,263,516 - 115,271,364 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	137,852,698 - 137,860,157 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	126,719,296 - 126,727,104 (+)	NCBI		Celera
RGSC_v3.1	7	137,934,261 - 137,936,594 (+)	NCBI
Cytogenetic Map	7	q36	NCBI

TROAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	49,323,255 - 49,331,731 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	49,323,216 - 49,331,733 (+)	Ensembl			hg38	GRCh38
GRCh37	12	49,717,038 - 49,725,514 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	48,003,238 - 48,011,781 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	48,003,328 - 48,011,781	NCBI
Celera	12	48,510,276 - 48,518,819 (+)	NCBI		Celera
Cytogenetic Map	12	q13.12	NCBI
HuRef	12	46,747,401 - 46,755,945 (+)	NCBI		HuRef
CHM1_1	12	49,682,668 - 49,691,211 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	49,284,317 - 49,293,921 (+)	NCBI		T2T-CHM13v2.0

Troap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	98,972,854 - 98,981,290 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	98,972,456 - 98,981,290 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	99,074,973 - 99,083,409 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	99,074,575 - 99,083,409 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	98,905,404 - 98,913,840 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	98,902,680 - 98,911,442 (+)	NCBI		MGSCv36	mm8
Celera	15	101,229,127 - 101,237,671 (+)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	55.8	NCBI

Troap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	8,129,874 - 8,137,263 (+)	Ensembl
ChiLan1.0	NW_004955500	8,129,031 - 8,137,235 (+)	NCBI	ChiLan1.0	ChiLan1.0

TROAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	44,853,584 - 44,863,193 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	44,850,242 - 44,859,954 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	39,420,106 - 39,428,676 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	40,305,833 - 40,314,800 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	40,305,833 - 40,314,800 (-)	Ensembl			panPan2	panpan1.1

TROAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	5,282,495 - 5,289,106 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	5,282,497 - 5,289,124 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	40,967,645 - 40,974,255 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	5,333,852 - 5,340,458 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	5,333,972 - 5,340,422 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	5,299,238 - 5,305,848 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	5,288,737 - 5,295,343 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	41,360,748 - 41,367,359 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Troap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	66,078,412 - 66,086,191 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936512	7,079,485 - 7,086,382 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TROAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	15,300,687 - 15,307,679 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	15,300,688 - 15,307,681 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	15,707,114 - 15,714,116 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TROAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	45,552,369 - 45,560,134 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	45,553,251 - 45,560,123 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	200,568,328 - 200,576,931 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Troap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	2,853,715 - 2,861,346 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624816	2,853,799 - 2,861,374 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Troap
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	271,903,613 - 271,911,194 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Troap
77 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	40
Count of miRNA genes:	38
Interacting mature miRNAs:	39
Transcripts:	ENSRNOT00000043479
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	121393075	137014596	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	132099939	137014596	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	119280025	135560836	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	115313999	136544683	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

AI029610

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	7	132,120,883 - 132,121,236 (+)	Marker Load Pipeline
mRatBN7.2	7	130,241,952 - 130,242,305 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	140,766,011 - 140,766,363	NCBI	Rnor6.0
Rnor_5.0	X	115,270,952 - 115,271,304	UniSTS	Rnor5.0
RGSC_v3.4	7	137,859,745 - 137,860,097	UniSTS	RGSC3.4
Celera	7	126,726,692 - 126,727,044	UniSTS
RH 3.4 Map	7	1087.2	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	66	161	89	88	57	87	57	6	346	185	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039078927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005486593	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC110690	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000089448 ⟹ ENSRNOP00000071862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	132,113,433 - 132,121,293 (+)	Ensembl
mRatBN7.2 Ensembl	7	130,234,556 - 130,242,365 (+)	Ensembl
Rnor_6.0 Ensembl	7	140,758,615 - 140,766,423 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112650 ⟹ ENSRNOP00000097449

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	132,113,471 - 132,121,294 (+)	Ensembl
mRatBN7.2 Ensembl	7	130,234,544 - 130,242,358 (+)	Ensembl

RefSeq Acc Id:

NM_001271243 ⟹ NP_001258172

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	132,113,488 - 132,121,296 (+)	NCBI
mRatBN7.2	7	130,234,556 - 130,242,365 (+)	NCBI
Rnor_6.0	7	140,758,615 - 140,766,423 (+)	NCBI
Rnor_5.0	X	115,263,516 - 115,271,364 (+)	NCBI
Celera	7	126,719,296 - 126,727,104 (+)	NCBI

Sequence:

show sequence

GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGAAATCCAGAAAATCGGCGAAAAAAACCTGA
GAAAGTAGAGGTGACCCCGAGGAGCTCCTGGAATGCCGCCATGACTACCCTCCAAACCAGTAAG
GACCCGCACCTCCGAGGTGTATCTCCCAACCCTAGCAAAATTCCAGTACTCTCTCAAAGATGCT
CGGATTTTTCCTCAGCCAAGTCGGGCTCTCTGGACCAGGAGAACCAAGATCCAAGGAGATCAGC
GAAGAAACCACTGCACCGTACTCAACGTCCCCTCACTGACACGGCAGGCCTCAGATCGAAAGCC
CTGCACCAGACAGAAAAATCACAAAGACTGAGGATCACTCAGCCGCGGAACCCTTTGGAGGAAC
TCAAGCCTAGCTCTGGGGGATCAAATGTGGGGCTCACCCATCCCCAGACAGAGGCCTCAGGGGC
TATAGAGTTTGTTGCTGACCCTGCAGCCCTGGCCACCATCCTGTCAGGTGAGGGAGTGAAGAGC
TGTCCCCTGGAGTCCCGGTCCAGTCTGGCTCAGAGAGTGCTAGTGCGTGAGAGAAAGGGAGGCA
CCCACATCCAGAGGGGCCAGAGTGCACGGTCTTCCGCATACCTGGCTCCCAGAATCCGCGCCCA
CCAAGCGGATCCCGCCAGGGCTTCCTGCTTCTCAAGGCTGGAGGGCCCAGGGCTCCGAGACCGC
ACTTTTTCCTCACAGAGGTCAGAGGCTCTGAACCCACGTGCAGGTTCCTCCTTTCATTCCTCCG
CTCGCCCCAGTTTACAGGAGCTCAGAAGAGAGACCTGTGGCGGTAGCAGGGATGGATCCTGTAC
TGACAGCAGGACCTCAGCAAGCCAGGCCTCGAGACTGCTCCTGAAGACCCCGGTGCAGCCTGCT
TCCTTAACCCTCAGAGGAGACCACGAGGCTGTTCCTCACTCAGGTGGAGAAGGAGGACCCAAAC
TGGGTCTGGCTCAACGAGTTCCATTAAAAGAAAGCCTAACACACACCAGGACCACATATTCATC
CATGAAACGCTTTACCACTCGACGGAAAACCCAATTCACACCCCTCCGGTCACTACCTAGAGTC
CAGCAGGCCCAATGGCTGAGTGGCCTCTCTCCTCATTCCTCCCCTGAAGAGCCTGCCCTGCCCT
GGGAGCAGATTGCTGTGAAGTTGTTTGACCAGGAGAGTCTCATCGCTTTGCAGAAGGGACCTGG
GAAACCATCTGTGGCAAGCACTTCTGGACCTCAGTCCACGAGAACCCCCAGCCACCAGGAGCTA
AAGATGCAGCGCATCCATATTTTGCAGCAGCTCTTGCGGCAGGAAGTAGAGGGGCTGGCAACGG
GCAATTGTGCAGCTCTGAATGGAGGCTCCGCTTTAGATACGACCGAACGTCAGCCCCCAGTGGC
TGAAGACTCTAGCACTCTGAGTGCTCCAGCACACAAGTCTGAAACTCCCCTTGCACTGCCAGAA
CACTCTGGTGTGACAGAGGCCCTCCCTGCGGAAGAGCGTGAGGAGCCACAGGCTTGCCCTGGGG
AAGACACTAAGGAGTCACAGCCCTGCTCTACCACAGAACTAAAGCCCCCAGTGCCACATAGAGC
TGAGCCAGAGCCGCCAGCACCTTGCCTTCCAGCACTGGCAGGACCCCCTCTGCCTAGTTGTCGG
GGACAGGCTGAGCCCCCTGAGGCTCGCCCTGGGATACAGCTGGGAGCATCGGCAGCCAGCGCTC
TGCAAGCTGGAAACCCAGAGTCTAGCCCAGAGCCCTGTTGCAGTCAGGGGCCTCCAGCAGCCAC
CAGCCTGACCTCGACACAAAGCCCAGTGTGTGCCAGCTTCCCTATCCACTCACTGCACTCTTCG
AGATCCCCGACAGGCCGCTCAGGCCCCAGCAGTGTGGCCCCTCGAACCCTGGCCCTGAGGCAGC
GCCTCAGAGCTTGTCTCACCACCATCCACTGTTTCCACGAGGCTCGCCTGGATGACGAATGTGC
CTTCTACACCAGTCGAGCCCTGCCCCCAGGGCCTACCAGGGTCTGCACCAATCCTGTTGCTACA
ATGCTTGAATGGCAAGATGCCCTGCGTTTCATTCCAGTTGGCCCTGTGGCCCCACAGGACTCTC
CGTCGTGACTCTGGCCTTTTCTGGGCTTCTGCCCTGCTGTACTCACCCCTTCCTTTAGCCTTAT
TTATTGTCGACCTGCCCATTGGACTGGGAGCCAACGCCCTTTTATCCTTTATAATAAAGTTTCT
ATAAATTGTGTTTGAA

hide sequence

RefSeq Acc Id:

XM_006257348 ⟹ XP_006257410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	132,112,105 - 132,121,296 (+)	NCBI
mRatBN7.2	7	130,234,485 - 130,242,365 (+)	NCBI
Rnor_6.0	7	140,758,576 - 140,766,423 (+)	NCBI
Rnor_5.0	X	115,263,516 - 115,271,364 (+)	NCBI

Sequence:

show sequence

TCACAAGCTTGGCGTATTTTACAAACCGGGGAAGCCTCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGTAGAAATCCAGAAAATCGGCGAAAAAAACCTGAGAAAGTAGAGGTGACCCCGAGGAGC
TCCTGGAATGCCGCCATGACTACCCTCCAAACCAGTAAGGACCCGCACCTCCGAGGTGTATCTC
CCAACCCTAGCAAAATTCCAGTACTCTCTCAAAGATGCTCGGATTTTTCCTCAGCCAAGTCGGG
CTCTCTGGACCAGGAGAACCAAGATCCAAGGAGATCAGCGAAGAAACCACTGCACCGTACTCAA
CGTCCCCTCACTGACACGGCAGGCCTCAGATCGAAAGCCCTGCACCAGACAGAAAAATCACAAA
GACTGAGGATCACTCAGCCGCGGAACCCTTTGGAGGAACTCAAGCCTAGCTCTGGGGGATCAAA
TGTGGGGCTCACCCATCCCCAGACAGAGGCCTCAGGGGCTATAGAGTTTGTTGCTGACCCTGCA
GCCCTGGCCACCATCCTGTCAGGTGAGGGAGTGAAGAGCTGTCCCCTGGAGTCCCGGTCCAGTC
TGGCTCAGAGAGTGCTAGTGCGTGAGAGAAAGGGAGGCACCCACATCCAGAGGGGCCAGAACCC
ACGTGCAGGTTCCTCCTTTCATTCCTCCGCTCGCCCCAGTTTACAGGAGCTCAGAAGAGAGACC
TGTGGCGGTAGCAGGGATGGATCCTGTACTGACAGCAGGACCTCAGCAAGCCAGGCCTCGAGAC
TGCTCCTGAAGACCCCGGTGCAGCCTGCTTCCTTAACCCTCAGAGGAGACCACGAGGCTGTTCC
TCACTCAGGTGGAGAAGGAGGACCCAAACTGGGTCTGGCTCAACGAGTTCCATTAAAAGAAAGC
CTAACACACACCAGGACCACATATTCATCCATGAAACGCTTTACCACTCGACGGAAAACCCAAT
TCACACCCCTCCGGTCACTACCTAGAGTCCAGCAGGCCCAATGGCTGAGTGGCCTCTCTCCTCA
TTCCTCCCCTGAAGAGCCTGCCCTGCCCTGGGAGCAGATTGCTGTGAAGTTGTTTGACCAGGAG
AGTCTCATCGCTTTGCAGAAGGGACCTGGGAAACCATCTGTGGCAAGCACTTCTGGACCTCAGT
CCACGAGAACCCCCAGCCACCAGGAGCTAAAGATGCAGCGCATCCATATTTTGCAGCAGCTCTT
GCGGCAGGAAGTAGAGGGGCTGGCAACGGGCAATTGTGCAGCTCTGAATGGAGGCTCCGCTTTA
GATACGACCGAACGTCAGCCCCCAGTGGCTGAAGACTCTAGCACTCTGAGTGCTCCAGCACACA
AGTCTGAAACTCCCCTTGCACTGCCAGAACACTCTGGTGTGACAGAGGCCCTCCCTGCGGAAGA
GCGTGAGGAGCCACAGGCTTGCCCTGGGGAAGACACTAAGGAGTCACAGCCCTGCTCTACCACA
GAACTAAAGCCCCCAGTGCCACATAGAGCTGAGCCAGAGCCGCCAGCACCTTGCCTTCCAGCAC
TGGCAGGACCCCCTCTGCCTAGTTGTCGGGGACAGGCTGAGCCCCCTGAGGCTCGCCCTGGGAT
ACAGCTGGGAGCATCGGCAGCCAGCGCTCTGCAAGCTGGAAACCCAGAGTCTAGCCCAGAGCCC
TGTTGCAGTCAGGGGCCTCCAGCAGCCACCAGCCTGACCTCGACACAAAGCCCAGTGTGTGCCA
GCTTCCCTATCCACTCACTGCACTCTTCGAGATCCCCGACAGGCCGCTCAGGCCCCAGCAGTGT
GGCCCCTCGAACCCTGGCCCTGAGGCAGCGCCTCAGAGCTTGTCTCACCACCATCCACTGTTTC
CACGAGGCTCGCCTGGATGACGAATGTGCCTTCTACACCAGTCGAGCCCTGCCCCCAGGGCCTA
CCAGGGTCTGCACCAATCCTGTTGCTACAATGCTTGAATGGCAAGATGCCCTGCGTTTCATTCC
AGTTGGCCCTGTGGCCCCACAGGACTCTCCGTCGTGACTCTGGCCTTTTCTGGGCTTCTGCCCT
GCTGTACTCACCCCTTCCTTTAGCCTTATTTATTGTCGACCTGCCCATTGGACTGGGAGCCAAC
GCCCTTTTATCCTTTATAATAAAGTTTCTATAAATTGTGTTTGAA

hide sequence

RefSeq Acc Id:

XM_039078927 ⟹ XP_038934855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	132,115,886 - 132,121,296 (+)	NCBI
mRatBN7.2	7	130,236,959 - 130,242,365 (+)	NCBI

RefSeq Acc Id:

XR_005486593

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	132,111,892 - 132,120,128 (+)	NCBI
mRatBN7.2	7	130,233,534 - 130,241,202 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258172	(Get FASTA)	NCBI Sequence Viewer
	XP_006257410	(Get FASTA)	NCBI Sequence Viewer
	XP_038934855	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL87003	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071862
	ENSRNOP00000071862.1
	ENSRNOP00000097449
	ENSRNOP00000097449.1

RefSeq Acc Id:

NP_001258172 ⟸ NM_001271243

- UniProtKB:

D3ZLZ9 (UniProtKB/TrEMBL), A6KCD9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTLQTSKDPHLRGVSPNPSKIPVLSQRCSDFSSAKSGSLDQENQDPRRSAKKPLHRTQRPLTD
TAGLRSKALHQTEKSQRLRITQPRNPLEELKPSSGGSNVGLTHPQTEASGAIEFVADPAALATI
LSGEGVKSCPLESRSSLAQRVLVRERKGGTHIQRGQSARSSAYLAPRIRAHQADPARASCFSRL
EGPGLRDRTFSSQRSEALNPRAGSSFHSSARPSLQELRRETCGGSRDGSCTDSRTSASQASRLL
LKTPVQPASLTLRGDHEAVPHSGGEGGPKLGLAQRVPLKESLTHTRTTYSSMKRFTTRRKTQFT
PLRSLPRVQQAQWLSGLSPHSSPEEPALPWEQIAVKLFDQESLIALQKGPGKPSVASTSGPQST
RTPSHQELKMQRIHILQQLLRQEVEGLATGNCAALNGGSALDTTERQPPVAEDSSTLSAPAHKS
ETPLALPEHSGVTEALPAEEREEPQACPGEDTKESQPCSTTELKPPVPHRAEPEPPAPCLPALA
GPPLPSCRGQAEPPEARPGIQLGASAASALQAGNPESSPEPCCSQGPPAATSLTSTQSPVCASF
PIHSLHSSRSPTGRSGPSSVAPRTLALRQRLRACLTTIHCFHEARLDDECAFYTSRALPPGPTR
VCTNPVATMLEWQDALRFIPVGPVAPQDSPS

hide sequence

RefSeq Acc Id:	XP_006257410 ⟸ XM_006257348
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ARF8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTTLQTSKDPHLRGVSPNPSKIPVLSQRCSDFSSAKSGSLDQENQDPRRSAKKPLHRTQRPLTD TAGLRSKALHQTEKSQRLRITQPRNPLEELKPSSGGSNVGLTHPQTEASGAIEFVADPAALATI LSGEGVKSCPLESRSSLAQRVLVRERKGGTHIQRGQNPRAGSSFHSSARPSLQELRRETCGGSR DGSCTDSRTSASQASRLLLKTPVQPASLTLRGDHEAVPHSGGEGGPKLGLAQRVPLKESLTHTR TTYSSMKRFTTRRKTQFTPLRSLPRVQQAQWLSGLSPHSSPEEPALPWEQIAVKLFDQESLIAL QKGPGKPSVASTSGPQSTRTPSHQELKMQRIHILQQLLRQEVEGLATGNCAALNGGSALDTTER QPPVAEDSSTLSAPAHKSETPLALPEHSGVTEALPAEEREEPQACPGEDTKESQPCSTTELKPP VPHRAEPEPPAPCLPALAGPPLPSCRGQAEPPEARPGIQLGASAASALQAGNPESSPEPCCSQG PPAATSLTSTQSPVCASFPIHSLHSSRSPTGRSGPSSVAPRTLALRQRLRACLTTIHCFHEARL DDECAFYTSRALPPGPTRVCTNPVATMLEWQDALRFIPVGPVAPQDSPS hide sequence

Ensembl Acc Id:

ENSRNOP00000071862 ⟸ ENSRNOT00000089448

RefSeq Acc Id:	XP_038934855 ⟸ XM_039078927
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000097449 ⟸ ENSRNOT00000112650

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZLZ9-F1-model_v2	AlphaFold	D3ZLZ9	1-671	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695639

Promoter ID:

EPDNEW_R6164

Type:

multiple initiation site

Name:

Troap_1

Description:

trophinin associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	140,758,596 - 140,758,656	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306870	AgrOrtholog
BioCyc Gene	G2FUF-32087	BioCyc
Ensembl Genes	ENSRNOG00000060703	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000089448	ENTREZGENE
	ENSRNOT00000089448.3	UniProtKB/TrEMBL
	ENSRNOT00000112650	ENTREZGENE
	ENSRNOT00000112650.2	UniProtKB/TrEMBL
InterPro	Tastin	UniProtKB/TrEMBL
KEGG Report	rno:300219	UniProtKB/TrEMBL
NCBI Gene	300219	ENTREZGENE
PANTHER	PTHR15289	UniProtKB/TrEMBL
	TASTIN	UniProtKB/TrEMBL
PhenoGen	Troap	PhenoGen
RatGTEx	ENSRNOG00000060703	RatGTEx
UniProt	A0A8I6ARF8	ENTREZGENE, UniProtKB/TrEMBL
	A6KCD9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZLZ9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Troap	trophinin associated protein	Troap_predicted	trophinin associated protein (tastin) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Troap_predicted	trophinin associated protein (tastin) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD