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Gene: Ints11 (integrator complex subunit 11) Rattus norvegicus

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Symbol:

Ints11

Name:

integrator complex subunit 11

RGD ID:

1306841

Description:

Predicted to enable RNA endonuclease activity. Predicted to be involved in RNA polymerase II transcription initiation surveillance and snRNA 3'-end processing. Predicted to act upstream of or within transcription elongation by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be part of INTAC complex and integrator complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in neurodevelopmental disorder with motor and language delay, ocular defects, and brain abnormalities. Orthologous to human INTS11 (integrator complex subunit 11); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cleavage and polyadenylation specific factor 3-like; cleavage and polyadenylation-specific factor 3-like protein; CPSF3-like protein; Cpsf3l; int11; LOC298688; MGC124975; RGD1306841; similar to RIKEN cDNA 2410006F12

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	INTS11 (integrator complex subunit 11)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ints11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ints11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	INTS11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	INTS11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ints11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	INTS11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	INTS11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ints11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ints11 (integrator complex subunit 11)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ints11 (integrator complex subunit 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	INTS11 (integrator complex subunit 11)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F10B5.8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	IntS11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ints11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ints11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ints11	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,761,370 - 171,779,883 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	171,761,371 - 171,779,883 (+)	Ensembl				GRCr8
mRatBN7.2	5	166,479,134 - 166,497,956 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,479,155 - 166,497,651 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	169,183,861 - 169,202,461 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,005,282 - 171,023,882 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,967,813 - 170,986,414 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,318,435 - 173,336,930 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,318,479 - 173,336,930 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	172,728,160 - 172,746,611 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	164,679,889 - 164,698,375 (+)	NCBI		Celera
RGSC_v3.1	5	172,738,640 - 172,757,106 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

neurodevelopmental disorder with motor and language delay, ocular defects, and brain abnormalities (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-citrinin (ISO)

(-)-demecolcine (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dimethylhydrazine (ISO)

14-Deoxy-11,12-didehydroandrographolide (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

3-chloropropane-1,2-diol (EXP)

acrolein (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

clobetasol (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

diazinon (ISO)

dibenzo[a,l]pyrene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

diuron (EXP)

dorsomorphin (ISO)

folic acid (ISO)

formaldehyde (ISO)

ivermectin (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (EXP)

PCB138 (ISO)

phenylmercury acetate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription elongation by RNA polymerase II (IEA,ISO)

RNA polymerase II transcription initiation surveillance (IEA,ISO,ISS)

snRNA 3'-end processing (IEA,ISO,ISS)

snRNA processing (IBA,IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO,ISS)

cytosol (IEA,ISO)

INTAC complex (IEA,ISO,ISS)

integrator complex (IEA,ISO,ISS)

nucleoplasm (IEA,ISO)

nucleus (IBA,IEA,ISO,ISS)

Molecular Function

hydrolase activity (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA endonuclease activity (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:16239144	PMID:22516433	PMID:23904267

Genomics

Comparative Map Data

Ints11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,761,370 - 171,779,883 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	171,761,371 - 171,779,883 (+)	Ensembl				GRCr8
mRatBN7.2	5	166,479,134 - 166,497,956 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	166,479,155 - 166,497,651 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	169,183,861 - 169,202,461 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	171,005,282 - 171,023,882 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	170,967,813 - 170,986,414 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	173,318,435 - 173,336,930 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	173,318,479 - 173,336,930 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	172,728,160 - 172,746,611 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	164,679,889 - 164,698,375 (+)	NCBI		Celera
RGSC_v3.1	5	172,738,640 - 172,757,106 (+)	NCBI
Cytogenetic Map	5	q36	NCBI

INTS11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,311,600 - 1,324,660 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,311,585 - 1,324,687 (-)	Ensembl			hg38	GRCh38
GRCh37	1	1,246,980 - 1,260,040 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,236,828 - 1,249,909 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	1,321,096 - 1,334,176 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	518,567 - 531,272 (-)	NCBI		HuRef
CHM1_1	1	1,233,996 - 1,247,095 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	743,151 - 756,245 (-)	NCBI		T2T-CHM13v2.0

Ints11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,954,006 - 155,973,561 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,954,003 - 155,973,560 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	155,869,547 - 155,889,103 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,869,546 - 155,889,103 (+)	Ensembl			mm10	GRCm38
MGSCv37	4	155,243,676 - 155,263,212 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,713,367 - 154,732,903 (+)	NCBI		MGSCv36	mm8
Celera	4	158,140,490 - 158,160,072 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	87.66	NCBI

Ints11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,479,057 - 9,491,629 (+)	Ensembl
ChiLan1.0	NW_004955486	9,479,057 - 9,491,629 (+)	NCBI	ChiLan1.0	ChiLan1.0

INTS11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,899,932 - 226,915,600 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	225,598,471 - 225,612,288 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	66,280 - 81,854 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,266,581 - 1,281,430 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,266,581 - 1,281,430 (-)	Ensembl			panPan2	panpan1.1

INTS11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,485,690 - 56,498,074 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,485,948 - 56,498,017 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,562,020 - 56,574,377 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	56,687,937 - 56,700,267 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	56,687,937 - 56,700,243 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	56,678,657 - 56,691,014 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,570,943 - 56,583,298 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	56,960,955 - 56,973,519 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ints11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	27,632,649 - 27,645,493 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936737	1,822,826 - 1,833,104 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936737	1,820,472 - 1,833,301 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

INTS11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,596,803 - 63,607,921 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	63,596,809 - 63,607,915 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	58,094,883 - 58,105,971 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

INTS11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	130,128,828 - 130,139,580 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	130,128,828 - 130,142,330 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666054	34,692,148 - 34,705,942 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ints11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	8,289,929 - 8,299,254 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624818	8,287,539 - 8,299,456 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ints11
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	4,741,981 - 4,760,119 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	111
Count of miRNA genes:	89
Interacting mature miRNAs:	94
Transcripts:	ENSRNOT00000026725
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	160071170	172129029	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat

Markers in Region

RH130347

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	171,779,378 - 171,779,626 (+)	Marker Load Pipeline
mRatBN7.2	5	166,497,146 - 166,497,394 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,336,426 - 173,336,673	NCBI	Rnor6.0
Rnor_5.0	5	176,812,044 - 176,812,291	UniSTS	Rnor5.0
RGSC_v3.4	5	172,746,107 - 172,746,354	UniSTS	RGSC3.4
Celera	5	164,697,871 - 164,698,118	UniSTS
RH 3.4 Map	5	1173.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH143513

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,497,662 - 166,497,785 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,336,942 - 173,337,064	NCBI	Rnor6.0
Rnor_5.0	5	176,812,560 - 176,812,682	UniSTS	Rnor5.0
RGSC_v3.4	5	172,746,623 - 172,746,745	UniSTS	RGSC3.4
Celera	5	164,698,387 - 164,698,509	UniSTS
RH 3.4 Map	5	1173.8	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH138955

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	166,497,812 - 166,497,946 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	173,337,092 - 173,337,225	NCBI	Rnor6.0
Rnor_5.0	5	176,812,710 - 176,812,843	UniSTS	Rnor5.0
RGSC_v3.4	5	172,746,773 - 172,746,906	UniSTS	RGSC3.4
Celera	5	164,698,537 - 164,698,670	UniSTS
RH 3.4 Map	5	1174.7	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239550	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC126156	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC089825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000026725 ⟹ ENSRNOP00000026725

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	171,761,400 - 171,779,883 (+)	Ensembl
mRatBN7.2 Ensembl	5	166,479,155 - 166,497,651 (+)	Ensembl
Rnor_6.0 Ensembl	5	173,318,479 - 173,336,930 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101518 ⟹ ENSRNOP00000087757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	171,761,371 - 171,779,881 (+)	Ensembl
mRatBN7.2 Ensembl	5	166,479,155 - 166,497,651 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107036 ⟹ ENSRNOP00000095330

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	171,763,042 - 171,779,883 (+)	Ensembl
mRatBN7.2 Ensembl	5	166,480,808 - 166,497,651 (+)	Ensembl

RefSeq Acc Id:

NM_001033892 ⟹ NP_001029064

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,761,405 - 171,779,883 (+)	NCBI
mRatBN7.2	5	166,479,171 - 166,497,651 (+)	NCBI
Rnor_6.0	5	173,318,452 - 173,336,930 (+)	NCBI
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI
RGSC_v3.4	5	172,728,160 - 172,746,611 (+)	RGD
Celera	5	164,679,889 - 164,698,375 (+)	NCBI

Sequence:

show sequence

GTCGCGGTGGCTGGGTGTCAGGTTTGATTGCGCGCGAGGTCTAAGGCTTTCCTGCGGGCGGTGC
GCGCGAGCTGTGGAAACGTGGTTTGAGACTGCCTGCCTCCTCGATGATGCCTGAAATTAGGGTC
ACTCCCTTGGGGGCTGGCCAGGATGTAGGCCGCAGCTGTATCTTAGTCTCCATTTCGGGCAAGA
ATGTCATGTTGGACTGTGGGATGCACATGGGCTACAATGATGACAGGCGCTTTCCTGACTTTTC
TTACATCACCCAGAGTGGCCGTCTGACTGACTTTCTGGACTGTGTAATCATCAGCCACTTCCAC
CTGGACCACTGTGGGGCACTCCCTTACTTCAGTGAAATGGTGGGCTACGATGGGCCCATCTATA
TGACCCACCCTACCCAGGCCATCTGCCCCATCCTGTTGGAAGACTACCGCAAGATCGCAGTGGA
CAAGAAGGGCGAGGCCAACTTCTTCACTTCTCAGATGATCAAAGACTGCATGAAGAAGGTGGTG
GCTGTTCACTTGCACCAGACAGTTCAGGTGGATGATGAACTGGAAATCAAGGCGTACTATGCAG
GCCATGTGTTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGTCTACACGGG
TGATTATAACATGACTCCAGACCGGCATTTGGGGGCTGCTTGGATTGACAAGTGTCGTCCCAAC
CTGCTCATCACAGAGTCCACATATGCCACAACCATCCGAGATTCCAAACGCTGCAGAGAGCGAG
ACTTCCTGAAGAAAGTTCATGAGACTGTGGAGCGTGGCGGAAAGGTGCTGATCCCTGTGTTTGC
GCTGGGCCGAGCACAAGAACTCTGCATCCTGCTGGAGACCTTCTGGGAGCGCATGAACCTGAAG
GTGCCCATCTACTTCTCTACGGGCCTGACAGAGAAAGCCAACCATTATTACAAGCTCTTCATCA
CCTGGACCAACCAGAAGATCCGGAAGACATTTGTCCAGAGGAACATGTTTGAGTTTAAGCACAT
CAAAGCCTTTGACCGGACATTTGCTGACAACCCAGGACCCATGGTTGTATTTGCTACACCTGGG
ATGCTGCACGCTGGCCAATCCCTGCAGATCTTCCGAAAATGGGCAGGAAATGAGAAGAACATGG
TCATCATGCCTGGCTACTGTGTGCAAGGTACTGTGGGCCACAAGATCCTTAGTGGGCAACGCAA
GCTGGAAATGGAAGGGCGTCAGATGCTGGAGGTAAAGATGCAAGTGGAGTACATGTCCTTCAGT
GCCCACGCCGACGCCAAGGGCATCATGCAGCTGGTGGGGCAGGCAGAGCCCGAGAGTGTGCTGC
TGGTGCATGGCGAGGCCAAGAAGATGGAGTTCCTGAGGCAGAAGATTGAGCAGGAATTCCGGGT
CAGCTGCTACATGCCAGCCAACGGTGAGACAGTGACGCTGCCCACAAGCCCCAGCATCCCTGTG
GGCATCTCCCTCGGACTGCTGAAGCGCGAGATGGTACAGGGACTGTTGCCTGAAGCCAAAAAAC
CTAGGCTTTTACATGGCACCCTAATTATGAAAGACAATAATTTCCGGCTGGTATCCTCGGAGCA
AGCCCTCAAGGAGTTGGGCCTGGCCGAACACCAACTGCGCTTCACCTGTCGTGTGCACCTGCAG
GACACACGCAAAGAACAAGAAACAGCCCTACGTGTGTACAGCCATCTCAAGAGCACCCTCAAGG
ACCACTGTGTACAGCATCTCCCGGATGGCTCTGTGACCGTGGAGTCCATTCTTATCCAAGCTGC
TGCCCACTCAGAGGATCCTGGTACTAAAGTGCTTCTGGTCTCCTGGACTTACCAAGATGAGGAG
CTGGGAAGCTTTCTCACAGCATTGCTCAAAAATGGCCTTCCCCAGGCTCCCAGCTGACATGTAT
CCACCAGTAACCCACCGCTGTGGTCTCTTTCAGTTTTCCCAGCATCAGAGTCATAGGCTGGCTA
AAGTAATAAACAGGCCTTTTTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006239549 ⟹ XP_006239611

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,761,370 - 171,779,883 (+)	NCBI
mRatBN7.2	5	166,479,137 - 166,497,956 (+)	NCBI
Rnor_6.0	5	173,318,436 - 173,336,930 (+)	NCBI
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI

Sequence:

show sequence

GCGCGCGGTTGTAGGAGTCGCGGTGGCTGGGTGTCAGGTTTGATTGCGCGCGAGGTCTAAGGCT
TTCCTGCGGGCGGTGCGCGCGAGCTGTGGAAACGTGGTTTGAGACTGCCTGCCTCCTCGATGAT
GCCTGAAATTAGGGTCACTCCCTTGGGGGCTGGCCAGGATGTAGGCCGCAGCTGTATCTTAGTC
TCCATTTCGGGCAAGAATGTCATGTTGGACTGTGGGATGCACATGGGCTACAATGATGACAGGC
GCTTTCCTGACTTTTCTTACATCACCCAGAGTGGCCGTCTGACTGACTTTCTGGACTGTGTAAT
CATCAGCCACTTCCACCTGGACCACTGTGGGGCACTCCCTTACTTCAGTGAAATGGTGGGCTAC
GATGGGCCCATCTATATGACCCACCCTACCCAGGCCATCTGCCCCATCCTGTTGGAAGACTACC
GCAAGATCGCAGTGGACAAGAAGGGCGAGGCCAACTTCTTCACTTCTCAGATGATCAAAGACTG
CATGAAGAAGGTGGTGGCTGTTCACTTGCACCAGACAGTTCAGGTGGATGATGAACTGGAAATC
AAGGCGTACTATGCAGGCCATGTGTTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGT
CTGTGGTCTACACGGGTGATTATAACATGACTCCAGACCGGCATTTGGGGGCTGCTTGGATTGA
CAAGTGTCGTCCCAACCTGCTCATCACAGAGTCCACATATGCCACAACCATCCGAGATTCCAAA
CGCTGCAGAGAGCGAGACTTCCTGAAGAAAGTTCATGAGACTGTGGAGCGTGGCGGAAAGGTGC
TGATCCCTGTGTTTGCGCTGGGCCGAGCACAAGAACTCTGCATCCTGCTGGAGACCTTCTGGGA
GCGCATGAACCTGAAGGTGCCCATCTACTTCTCTACGGGCCTGACAGAGAAAGCCAACCATTAT
TACAAGCTCTTCATCACCTGGACCAACCAGAAGATCCGGAAGACATTTGTCCAGAGGAACATGT
TTGAGTTTAAGCACATCAAAGCCTTTGACCGGACATTTGCTGACAACCCAGGACCCATGGTTGT
ATTTGCTACACCTGGGATGCTGCACGCTGGCCAATCCCTGCAGATCTTCCGAAAATGGGCAGGA
AATGAGAAGAACATGGTCATCATGCCTGGCTACTGTGTGCAAGGTACTGTGGGCCACAAGATCC
TTAGTGGGCAACGCAAGCTGGAAATGGAAGGGCGTCAGATGCTGGAGGTAAAGATGCAAGTGGA
GTACATGTCCTTCAGTGCCCACGCCGACGCCAAGGGCATCATGCAGCTGGTGGGGCAGGCAGAG
CCCGAGAGTGTGCTGCTGGTGCATGGCGAGGCCAAGAAGATGGAGTTCCTGAGGCAGAAGATTG
AGCAGGAATTCCGGGTCAGCTGCTACATGCCAGCCAACGGTGAGACAGTGACGCTGCCCACAAG
CCCCAGCATCCCTGTGGGCATCTCCCTCGGACTGCTGAAGCGCGAGATGGTACAGGGTATGAAG
GGCAGGCTGGGGCATGGGTCAAGGGGGCAGGTAACTGGTGGCTGGGTTGACTGCATCATTCCAT
TCTTCACAGGACTGTTGCCTGAAGCCAAAAAACCTAGGCTTTTACATGGCACCCTAATTATGAA
AGACAATAATTTCCGGCTGGTATCCTCGGAGCAAGCCCTCAAGGAGTTGGGCCTGGCCGAACAC
CAACTGCGCTTCACCTGTCGTGTGCACCTGCAGGACACACGCAAAGAACAAGAAACAGCCCTAC
GTGTGTACAGCCATCTCAAGAGCACCCTCAAGGACCACTGTGTACAGCATCTCCCGGATGGCTC
TGTGACCGTGGAGTCCATTCTTATCCAAGCTGCTGCCCACTCAGAGGATCCTGGTACTAAAGTG
CTTCTGGTCTCCTGGACTTACCAAGTAAGGAGGATGAGCATCACTAGTACTCCTGGAGATCTCA
CTCGGTATTGTGTTGTTTGTAATGTTTAACTGTGGTTCCCTTTCTTACAGGATGAGGAGCTGGG
AAGCTTTCTCACAGCATTGCTCAAAAATGGCCTTCCCCAGGCTCCCAGCTGACATGTATCCACC
AGTAACCCACCGCTGTGGTCTCTTTCAGTTTTCCCAGCATCAGAGTCATAGGCTGGCTAAAGTA
ATAAACAGGCCTTTTTGTTC

hide sequence

RefSeq Acc Id:

XM_006239550 ⟹ XP_006239612

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,761,370 - 171,779,883 (+)	NCBI
mRatBN7.2	5	166,479,138 - 166,497,651 (+)	NCBI
Rnor_6.0	5	173,318,436 - 173,336,930 (+)	NCBI
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI

Sequence:

show sequence

GCGCGCGGTTGTAGGAGTCGCGGTGGCTGGGTGTCAGGTTTGATTGCGCGCGAGGTCTAAGGCT
TTCCTGCGGGCGGTGCGCGCGAGCTGTGGAAACGTGGTTTGAGACTGCCTGCCTCCTCGATGAT
GCCTGAAATTAGGGTCACTCCCTTGGGGGCTGGCCAGGATGTAGGCCGCAGCTGTATCTTAGTC
TCCATTTCGGGCAAGAATGTCATGTTGGACTGTGGGATGCACATGGGCTACAATGATGACAGGC
GCTTTCCTGACTTTTCTTACATCACCCAGAGTGGCCGTCTGACTGACTTTCTGGACTGTGTAAT
CATCAGCCACTTCCACCTGGACCACTGTGGGGCACTCCCTTACTTCAGTGAAATGGTGGGCTAC
GATGGGCCCATCTATATGACCCACCCTACCCAGGCCATCTGCCCCATCCTGTTGGAAGACTACC
GCAAGATCGCAGTGGACAAGAAGGGCGAGGCCAACTTCTTCACTTCTCAGATGATCAAAGACTG
CATGAAGAAGGTGGTGGCTGTTCACTTGCACCAGACAGTTCAGGTGGATGATGAACTGGAAATC
AAGGCGTACTATGCAGGCCATGTGTTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGT
CTGTGGTCTACACGGGTGATTATAACATGACTCCAGACCGGCATTTGGGGGCTGCTTGGATTGA
CAAGTGTCGTCCCAACCTGCTCATCACAGAGTCCACATATGCCACAACCATCCGAGATTCCAAA
CGCTGCAGAGAGCGAGACTTCCTGAAGAAAGTTCATGAGACTGTGGAGCGTGGCGGAAAGGTGC
TGATCCCTGTGTTTGCGCTGGGCCGAGCACAAGAACTCTGCATCCTGCTGGAGACCTTCTGGGA
GCGCATGAACCTGAAGGTGCCCATCTACTTCTCTACGGGCCTGACAGAGAAAGCCAACCATTAT
TACAAGCTCTTCATCACCTGGACCAACCAGAAGATCCGGAAGACATTTGTCCAGAGGAACATGT
TTGAGTTTAAGCACATCAAAGCCTTTGACCGGACATTTGCTGACAACCCAGGACCCATGGTTGT
ATTTGCTACACCTGGGATGCTGCACGCTGGCCAATCCCTGCAGATCTTCCGAAAATGGGCAGGA
AATGAGAAGAACATGGTCATCATGCCTGGCTACTGTGTGCAAGGTACTGTGGGCCACAAGATCC
TTAGTGGGCAACGCAAGCTGGAAATGGAAGGGCGTCAGATGCTGGAGGTAAAGATGCAAGTGGA
GTACATGTCCTTCAGTGCCCACGCCGACGCCAAGGGCATCATGCAGCTGGTGGGGCAGGCAGAG
CCCGAGAGTGTGCTGCTGGTGCATGGCGAGGCCAAGAAGATGGAGTTCCTGAGGCAGAAGATTG
AGCAGGAATTCCGGGTCAGCTGCTACATGCCAGCCAACGGTGAGACAGTGACGCTGCCCACAAG
CCCCAGCATCCCTGTGGGCATCTCCCTCGGACTGCTGAAGCGCGAGATGGTACAGGGTATGAAG
GGCAGGCTGGGGCATGGGTCAAGGGGGCAGGTAACTGGTGGCTGGGTTGACTGCATCATTCCAT
TCTTCACAGGACTGTTGCCTGAAGCCAAAAAACCTAGGCTTTTACATGGCACCCTAATTATGAA
AGACAATAATTTCCGGCTGGTATCCTCGGAGCAAGCCCTCAAGGAGTTGGGCCTGGCCGAACAC
CAACTGCGCTTCACCTGTCGTGTGCACCTGCAGGACACACGCAAAGAACAAGAAACAGCCCTAC
GTGTGTACAGCCATCTCAAGAGCACCCTCAAGGACCACTGTGTACAGCATCTCCCGGATGGCTC
TGTGACCGTGGAGTCCATTCTTATCCAAGCTGCTGCCCACTCAGAGGATCCTGGTACTAAAGTG
CTTCTGGTCTCCTGGACTTACCAAGATGAGGAGCTGGGAAGCTTTCTCACAGCATTGCTCAAAA
ATGGCCTTCCCCAGGCTCCCAGCTGACATGTATCCACCAGTAACCCACCGCTGTGGTCTCTTTC
AGTTTTCCCAGCATCAGAGTCATAGGCTGGCTAAAGTAATAAACAGGCCTTTTTGTTC

hide sequence

RefSeq Acc Id:

XM_006239551 ⟹ XP_006239613

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,761,370 - 171,779,883 (+)	NCBI
mRatBN7.2	5	166,479,138 - 166,497,956 (+)	NCBI
Rnor_6.0	5	173,318,437 - 173,336,930 (+)	NCBI
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI

Sequence:

show sequence

CGCGCGGTTGTAGGAGTCGCGGTGGCTGGGTGTCAGGTTTGATTGCGCGCGAGGTCTAAGGCTT
TCCTGCGGGCGGTGCGCGCGAGCTGTGGAAACGTGGTTTGAGACTGCCTGCCTCCTCGATGATG
CCTGAAATTAGGGTCACTCCCTTGGGGGCTGGCCAGGATGTAGGCCGCAGCTGTATCTTAGTCT
CCATTTCGGGCAAGAATGTCATGTTGGACTGTGGGATGCACATGGGCTACAATGATGACAGGCG
CTTTCCTGACTTTTCTTACATCACCCAGAGTGGCCGTCTGACTGACTTTCTGGACTGTGTAATC
ATCAGCCACTTCCACCTGGACCACTGTGGGGCACTCCCTTACTTCAGTGAAATGGTGGGCTACG
ATGGGCCCATCTATATGACCCACCCTACCCAGGCCATCTGCCCCATCCTGTTGGAAGACTACCG
CAAGATCGCAGTGGACAAGAAGGGCGAGGCCAACTTCTTCACTTCTCAGATGATCAAAGACTGC
ATGAAGAAGGTGGTGGCTGTTCACTTGCACCAGACAGTTCAGGTGGATGATGAACTGGAAATCA
AGGCGTACTATGCAGGCCATGTGTTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGTC
TGTGGTCTACACGGGTGATTATAACATGACTCCAGACCGGCATTTGGGGGCTGCTTGGATTGAC
AAGTGTCGTCCCAACCTGCTCATCACAGAGTCCACATATGCCACAACCATCCGAGATTCCAAAC
GCTGCAGAGAGCGAGACTTCCTGAAGAAAGTTCATGAGACTGTGGAGCGTGGCGGAAAGGTGCT
GATCCCTGTGTTTGCGCTGGGCCGAGCACAAGAACTCTGCATCCTGCTGGAGACCTTCTGGGAG
CGCATGAACCTGAAGGTGCCCATCTACTTCTCTACGGGCCTGACAGAGAAAGCCAACCATTATT
ACAAGCTCTTCATCACCTGGACCAACCAGAAGATCCGGAAGACATTTGTCCAGAGGAACATGTT
TGAGTTTAAGCACATCAAAGCCTTTGACCGGACATTTGCTGACAACCCAGGACCCATGGTTGTA
TTTGCTACACCTGGGATGCTGCACGCTGGCCAATCCCTGCAGATCTTCCGAAAATGGGCAGGAA
ATGAGAAGAACATGGTCATCATGCCTGGCTACTGTGTGCAAGGTACTGTGGGCCACAAGATCCT
TAGTGGGCAACGCAAGCTGGAAATGGAAGGGCGTCAGATGCTGGAGGTAAAGATGCAAGTGGAG
TACATGTCCTTCAGTGCCCACGCCGACGCCAAGGGCATCATGCAGCTGGTGGGGCAGGCAGAGC
CCGAGAGTGTGCTGCTGGTGCATGGCGAGGCCAAGAAGATGGAGTTCCTGAGGCAGAAGATTGA
GCAGGAATTCCGGGTCAGCTGCTACATGCCAGCCAACGGTGAGACAGTGACGCTGCCCACAAGC
CCCAGCATCCCTGTGGGCATCTCCCTCGGACTGCTGAAGCGCGAGATGGTACAGGGACTGTTGC
CTGAAGCCAAAAAACCTAGGCTTTTACATGGCACCCTAATTATGAAAGACAATAATTTCCGGCT
GGTATCCTCGGAGCAAGCCCTCAAGGAGTTGGGCCTGGCCGAACACCAACTGCGCTTCACCTGT
CGTGTGCACCTGCAGGACACACGCAAAGAACAAGAAACAGCCCTACGTGTGTACAGCCATCTCA
AGAGCACCCTCAAGGACCACTGTGTACAGCATCTCCCGGATGGCTCTGTGACCGTGGAGTCCAT
TCTTATCCAAGCTGCTGCCCACTCAGAGGATCCTGGTACTAAAGTGCTTCTGGTCTCCTGGACT
TACCAAGTAAGGAGGATGAGCATCACTAGTACTCCTGGAGATCTCACTCGGTATTGTGTTGTTT
GTAATGTTTAACTGTGGTTCCCTTTCTTACAGGATGAGGAGCTGGGAAGCTTTCTCACAGCATT
GCTCAAAAATGGCCTTCCCCAGGCTCCCAGCTGACATGTATCCACCAGTAACCCACCGCTGTGG
TCTCTTTCAGTTTTCCCAGCATCAGAGTCATAGGCTGGCTAAAGTAATAAACAGGCCTTTTTGT
TC

hide sequence

RefSeq Acc Id:

XM_006239552 ⟹ XP_006239614

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,761,561 - 171,779,883 (+)	NCBI
mRatBN7.2	5	166,479,317 - 166,497,956 (+)	NCBI
Rnor_6.0	5	173,318,596 - 173,336,930 (+)	NCBI
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI

Sequence:

show sequence

CCGAGTCCTAAGCATCTTCTGCGGCGTCCGGCGAGTCCCTTCATCTCCATAGCCGTCTATCAGC
TGTTCATCCCAAGGAGCGGAAGCCGGAGTAGAACGTTTCGGAGCTAGTGCTTCCTTTTCTCTGC
CTGGCACGGGGATCGAAGAGCTTTGGGTTTGATTCCTGGTCCTAGAGCTCGATGGGCTGGCCAG
GATGTAGGCCGCAGCTGTATCTTAGTCTCCATTTCGGGCAAGAATGTCATGTTGGACTGTGGGA
TGCACATGGGCTACAATGATGACAGGCGCTTTCCTGACTTTTCTTACATCACCCAGAGTGGCCG
TCTGACTGACTTTCTGGACTGTGTAATCATCAGCCACTTCCACCTGGACCACTGTGGGGCACTC
CCTTACTTCAGTGAAATGGTGGGCTACGATGGGCCCATCTATATGACCCACCCTACCCAGGCCA
TCTGCCCCATCCTGTTGGAAGACTACCGCAAGATCGCAGTGGACAAGAAGGGCGAGGCCAACTT
CTTCACTTCTCAGATGATCAAAGACTGCATGAAGAAGGTGGTGGCTGTTCACTTGCACCAGACA
GTTCAGGTGGATGATGAACTGGAAATCAAGGCGTACTATGCAGGCCATGTGTTGGGGGCAGCCA
TGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGTCTACACGGGTGATTATAACATGACTCCAGA
CCGGCATTTGGGGGCTGCTTGGATTGACAAGTGTCGTCCCAACCTGCTCATCACAGAGTCCACA
TATGCCACAACCATCCGAGATTCCAAACGCTGCAGAGAGCGAGACTTCCTGAAGAAAGTTCATG
AGACTGTGGAGCGTGGCGGAAAGGTGCTGATCCCTGTGTTTGCGCTGGGCCGAGCACAAGAACT
CTGCATCCTGCTGGAGACCTTCTGGGAGCGCATGAACCTGAAGGTGCCCATCTACTTCTCTACG
GGCCTGACAGAGAAAGCCAACCATTATTACAAGCTCTTCATCACCTGGACCAACCAGAAGATCC
GGAAGACATTTGTCCAGAGGAACATGTTTGAGTTTAAGCACATCAAAGCCTTTGACCGGACATT
TGCTGACAACCCAGGACCCATGGTTGTATTTGCTACACCTGGGATGCTGCACGCTGGCCAATCC
CTGCAGATCTTCCGAAAATGGGCAGGAAATGAGAAGAACATGGTCATCATGCCTGGCTACTGTG
TGCAAGGTACTGTGGGCCACAAGATCCTTAGTGGGCAACGCAAGCTGGAAATGGAAGGGCGTCA
GATGCTGGAGGTAAAGATGCAAGTGGAGTACATGTCCTTCAGTGCCCACGCCGACGCCAAGGGC
ATCATGCAGCTGGTGGGGCAGGCAGAGCCCGAGAGTGTGCTGCTGGTGCATGGCGAGGCCAAGA
AGATGGAGTTCCTGAGGCAGAAGATTGAGCAGGAATTCCGGGTCAGCTGCTACATGCCAGCCAA
CGGTGAGACAGTGACGCTGCCCACAAGCCCCAGCATCCCTGTGGGCATCTCCCTCGGACTGCTG
AAGCGCGAGATGGTACAGGGTATGAAGGGCAGGCTGGGGCATGGGTCAAGGGGGCAGGTAACTG
GTGGCTGGGTTGACTGCATCATTCCATTCTTCACAGGACTGTTGCCTGAAGCCAAAAAACCTAG
GCTTTTACATGGCACCCTAATTATGAAAGACAATAATTTCCGGCTGGTATCCTCGGAGCAAGCC
CTCAAGGAGTTGGGCCTGGCCGAACACCAACTGCGCTTCACCTGTCGTGTGCACCTGCAGGACA
CACGCAAAGAACAAGAAACAGCCCTACGTGTGTACAGCCATCTCAAGAGCACCCTCAAGGACCA
CTGTGTACAGCATCTCCCGGATGGCTCTGTGACCGTGGAGTCCATTCTTATCCAAGCTGCTGCC
CACTCAGAGGATCCTGGTACTAAAGTGCTTCTGGTCTCCTGGACTTACCAAGTAAGGAGGATGA
GCATCACTAGTACTCCTGGAGATCTCACTCGGTATTGTGTTGTTTGTAATGTTTAACTGTGGTT
CCCTTTCTTACAGGATGAGGAGCTGGGAAGCTTTCTCACAGCATTGCTCAAAAATGGCCTTCCC
CAGGCTCCCAGCTGACATGTATCCACCAGTAACCCACCGCTGTGGTCTCTTTCAGTTTTCCCAG
CATCAGAGTCATAGGCTGGCTAAAGTAATAAACAGGCCTTTTTGTTC

hide sequence

RefSeq Acc Id:

XM_006239553 ⟹ XP_006239615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,761,371 - 171,779,883 (+)	NCBI
mRatBN7.2	5	166,479,134 - 166,497,956 (+)	NCBI
Rnor_6.0	5	173,318,435 - 173,336,930 (+)	NCBI
Rnor_5.0	5	176,794,059 - 176,812,548 (+)	NCBI

Sequence:

show sequence

TGCGCGCGGTTGTAGGAGTCGCGGTGGCTGGGTGTCAGGTTTGATTGCGCGCGAGGTCTAAGGC
TTTCCTGCGGGCGGTGCGCGCGAGCTGTGGAAACGTGGTTTGAGACTGCCTGCCTCCTCGATGA
TGCCTGAAATTAGGGTCACTCCCTTGGGGGCTGGCCAGGATGTAGGCCGCAGCTGTATCTTAGT
CTCCATTTCGGGCAAGAATGTCATGTTGGACTGTGGGATGCACATGGGCTACAATGATGACAGG
CGCTTTCCTGACTTTTCTTACATCACCCAGAGTGGCCGTCTGACTGACTTTCTGGACTGTGTAA
TCATCAGGTGGATGATGAACTGGAAATCAAGGCGTACTATGCAGGCCATGTGTTGGGGGCAGCC
ATGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGTCTACACGGTCAGTGGAAGTATTTGTTTGG
TGCTTGAGTGAAATTGCTGGGGGTAGAAGAAAGACAACTTCCTTATTGCATTTTCTTTGCCAGG
GTGATTATAACATGACTCCAGACCGGCATTTGGGGGCTGCTTGGATTGACAAGTGTCGTCCCAA
CCTGCTCATCACAGAGTCCACATATGCCACAACCATCCGAGATTCCAAACGCTGCAGAGAGCGA
GACTTCCTGAAGAAAGTTCATGAGACTGTGGAGCGTGGCGGAAAGGTGCTGATCCCTGTGTTTG
CGCTGGGCCGAGCACAAGAACTCTGCATCCTGCTGGAGACCTTCTGGGAGCGCATGAACCTGAA
GGTGCCCATCTACTTCTCTACGGGCCTGACAGAGAAAGCCAACCATTATTACAAGCTCTTCATC
ACCTGGACCAACCAGAAGATCCGGAAGACATTTGTCCAGAGGAACATGTTTGAGTTTAAGCACA
TCAAAGCCTTTGACCGGACATTTGCTGACAACCCAGGACCCATGGTTGTATTTGCTACACCTGG
GATGCTGCACGCTGGCCAATCCCTGCAGATCTTCCGAAAATGGGCAGGAAATGAGAAGAACATG
GTCATCATGCCTGGCTACTGTGTGCAAGGTACTGTGGGCCACAAGATCCTTAGTGGGCAACGCA
AGCTGGAAATGGAAGGGCGTCAGATGCTGGAGGTAAAGATGCAAGTGGAGTACATGTCCTTCAG
TGCCCACGCCGACGCCAAGGGCATCATGCAGCTGGTGGGGCAGGCAGAGCCCGAGAGTGTGCTG
CTGGTGCATGGCGAGGCCAAGAAGATGGAGTTCCTGAGGCAGAAGATTGAGCAGGAATTCCGGG
TCAGCTGCTACATGCCAGCCAACGGTGAGACAGTGACGCTGCCCACAAGCCCCAGCATCCCTGT
GGGCATCTCCCTCGGACTGCTGAAGCGCGAGATGGTACAGGGTATGAAGGGCAGGCTGGGGCAT
GGGTCAAGGGGGCAGGTAACTGGTGGCTGGGTTGACTGCATCATTCCATTCTTCACAGGACTGT
TGCCTGAAGCCAAAAAACCTAGGCTTTTACATGGCACCCTAATTATGAAAGACAATAATTTCCG
GCTGGTATCCTCGGAGCAAGCCCTCAAGGAGTTGGGCCTGGCCGAACACCAACTGCGCTTCACC
TGTCGTGTGCACCTGCAGGACACACGCAAAGAACAAGAAACAGCCCTACGTGTGTACAGCCATC
TCAAGAGCACCCTCAAGGACCACTGTGTACAGCATCTCCCGGATGGCTCTGTGACCGTGGAGTC
CATTCTTATCCAAGCTGCTGCCCACTCAGAGGATCCTGGTACTAAAGTGCTTCTGGTCTCCTGG
ACTTACCAAGTAAGGAGGATGAGCATCACTAGTACTCCTGGAGATCTCACTCGGTATTGTGTTG
TTTGTAATGTTTAACTGTGGTTCCCTTTCTTACAGGATGAGGAGCTGGGAAGCTTTCTCACAGC
ATTGCTCAAAAATGGCCTTCCCCAGGCTCCCAGCTGACATGTATCCACCAGTAACCCACCGCTG
TGGTCTCTTTCAGTTTTCCCAGCATCAGAGTCATAGGCTGGCTAAAGTAATAAACAGGCCTTTT
TGTTC

hide sequence

RefSeq Acc Id:

XM_017593318 ⟹ XP_017448807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,763,693 - 171,779,883 (+)	NCBI
mRatBN7.2	5	166,481,460 - 166,497,956 (+)	NCBI
Rnor_6.0	5	173,321,256 - 173,336,930 (+)	NCBI

Sequence:

show sequence

AGGCGCTTTCCTGACTTTTCTTACATCACCCAGAGTGGCCGTCTGACTGACTTTCTGGACTGTG
TAATCATCAGGCCATCTGCCCCATCCTGTTGGAAGACTACCGCAAGATCGCAGTGGACAAGAAG
GGCGAGGCCAACTTCTTCACTTCTCAGATGATCAAAGACTGCATGAAGAAGGTGGTGGCTGTTC
ACTTGCACCAGACAGTTCAGGTGGATGATGAACTGGAAATCAAGGCGTACTATGCAGGCCATGT
GTTGGGGGCAGCCATGTTCCAGATTAAAGTGGGCTCAGAGTCTGTGGTCTACACGGGTGATTAT
AACATGACTCCAGACCGGCATTTGGGGGCTGCTTGGATTGACAAGTGTCGTCCCAACCTGCTCA
TCACAGAGTCCACATATGCCACAACCATCCGAGATTCCAAACGCTGCAGAGAGCGAGACTTCCT
GAAGAAAGTTCATGAGACTGTGGAGCGTGGCGGAAAGGTGCTGATCCCTGTGTTTGCGCTGGGC
CGAGCACAAGAACTCTGCATCCTGCTGGAGACCTTCTGGGAGCGCATGAACCTGAAGGTGCCCA
TCTACTTCTCTACGGGCCTGACAGAGAAAGCCAACCATTATTACAAGCTCTTCATCACCTGGAC
CAACCAGAAGATCCGGAAGACATTTGTCCAGAGGAACATGTTTGAGTTTAAGCACATCAAAGCC
TTTGACCGGACATTTGCTGACAACCCAGGACCCATGGTTGTATTTGCTACACCTGGGATGCTGC
ACGCTGGCCAATCCCTGCAGATCTTCCGAAAATGGGCAGGAAATGAGAAGAACATGGTCATCAT
GCCTGGCTACTGTGTGCAAGGTACTGTGGGCCACAAGATCCTTAGTGGGCAACGCAAGCTGGAA
ATGGAAGGGCGTCAGATGCTGGAGGTAAAGATGCAAGTGGAGTACATGTCCTTCAGTGCCCACG
CCGACGCCAAGGGCATCATGCAGCTGGTGGGGCAGGCAGAGCCCGAGAGTGTGCTGCTGGTGCA
TGGCGAGGCCAAGAAGATGGAGTTCCTGAGGCAGAAGATTGAGCAGGAATTCCGGGTCAGCTGC
TACATGCCAGCCAACGGTGAGACAGTGACGCTGCCCACAAGCCCCAGCATCCCTGTGGGCATCT
CCCTCGGACTGCTGAAGCGCGAGATGGTACAGGGTATGAAGGGCAGGCTGGGGCATGGGTCAAG
GGGGCAGGTAACTGGTGGCTGGGTTGACTGCATCATTCCATTCTTCACAGGACTGTTGCCTGAA
GCCAAAAAACCTAGGCTTTTACATGGCACCCTAATTATGAAAGACAATAATTTCCGGCTGGTAT
CCTCGGAGCAAGCCCTCAAGGAGTTGGGCCTGGCCGAACACCAACTGCGCTTCACCTGTCGTGT
GCACCTGCAGGACACACGCAAAGAACAAGAAACAGCCCTACGTGTGTACAGCCATCTCAAGAGC
ACCCTCAAGGACCACTGTGTACAGCATCTCCCGGATGGCTCTGTGACCGTGGAGTCCATTCTTA
TCCAAGCTGCTGCCCACTCAGAGGATCCTGGTACTAAAGTGCTTCTGGTCTCCTGGACTTACCA
AGTAAGGAGGATGAGCATCACTAGTACTCCTGGAGATCTCACTCGGTATTGTGTTGTTTGTAAT
GTTTAACTGTGGTTCCCTTTCTTACAGGATGAGGAGCTGGGAAGCTTTCTCACAGCATTGCTCA
AAAATGGCCTTCCCCAGGCTCCCAGCTGACATGTATCCACCAGTAACCCACCGCTGTGGTCTCT
TTCAGTTTTCCCAGCATCAGAGTCATAGGCTGGCTAAAGTAATAAACAGGCCTTTTTGTTC

hide sequence

RefSeq Acc Id:

XM_063287506 ⟹ XP_063143576

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	171,761,567 - 171,779,883 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001029064	(Get FASTA)	NCBI Sequence Viewer
	XP_006239611	(Get FASTA)	NCBI Sequence Viewer
	XP_006239612	(Get FASTA)	NCBI Sequence Viewer
	XP_006239613	(Get FASTA)	NCBI Sequence Viewer
	XP_006239614	(Get FASTA)	NCBI Sequence Viewer
	XP_006239615	(Get FASTA)	NCBI Sequence Viewer
	XP_017448807	(Get FASTA)	NCBI Sequence Viewer
	XP_063143576	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05304	(Get FASTA)	NCBI Sequence Viewer
	EDL81339	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000026725
	ENSRNOP00000087757
	ENSRNOP00000095330
GenBank Protein	Q3MHC2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001029064 ⟸ NM_001033892

- UniProtKB:

A0A8L2UK86 (UniProtKB/TrEMBL), A6IUT8 (UniProtKB/TrEMBL), A0A8I6B2F1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC
VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK
DCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAW
IDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETF
WERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPM
VVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQ
VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLP
TSPSIPVGISLGLLKREMVQGLLPEAKKPRLLHGTLIMKDNNFRLVSSEQALKELGLAEHQLRF
TCRVHLQDTRKEQETALRVYSHLKSTLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVS
WTYQDEELGSFLTALLKNGLPQAPS

hide sequence

RefSeq Acc Id:	XP_006239611 ⟸ XM_006239549
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6B2F1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK DCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAW IDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETF WERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPM VVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQ VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLP TSPSIPVGISLGLLKREMVQGMKGRLGHGSRGQVTGGWVDCIIPFFTGLLPEAKKPRLLHGTLI MKDNNFRLVSSEQALKELGLAEHQLRFTCRVHLQDTRKEQETALRVYSHLKSTLKDHCVQHLPD GSVTVESILIQAAAHSEDPGTKVLLVSWTYQVRRMSITSTPGDLTRYCVVCNV hide sequence

RefSeq Acc Id:	XP_006239612 ⟸ XM_006239550
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6B2F1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK DCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAW IDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETF WERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPM VVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQ VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLP TSPSIPVGISLGLLKREMVQGMKGRLGHGSRGQVTGGWVDCIIPFFTGLLPEAKKPRLLHGTLI MKDNNFRLVSSEQALKELGLAEHQLRFTCRVHLQDTRKEQETALRVYSHLKSTLKDHCVQHLPD GSVTVESILIQAAAHSEDPGTKVLLVSWTYQDEELGSFLTALLKNGLPQAPS hide sequence

RefSeq Acc Id:	XP_006239613 ⟸ XM_006239551
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6B2F1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK DCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAW IDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETF WERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPM VVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQ VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLP TSPSIPVGISLGLLKREMVQGLLPEAKKPRLLHGTLIMKDNNFRLVSSEQALKELGLAEHQLRF TCRVHLQDTRKEQETALRVYSHLKSTLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVS WTYQVRRMSITSTPGDLTRYCVVCNV hide sequence

RefSeq Acc Id:	XP_006239615 ⟸ XM_006239553
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6A6F2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC VIIRWMMNWKSRRTMQAMCWGQPCSRLKWAQSLWSTRSVEVFVWCLSEIAGGRRKTTSLLHFLC QGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFK HIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQ RKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEF RVSCYMPANGETVTLPTSPSIPVGISLGLLKREMVQGMKGRLGHGSRGQVTGGWVDCIIPFFTG LLPEAKKPRLLHGTLIMKDNNFRLVSSEQALKELGLAEHQLRFTCRVHLQDTRKEQETALRVYS HLKSTLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQVRRMSITSTPGDLTRYC VVCNV hide sequence

RefSeq Acc Id:	XP_006239614 ⟸ XM_006239552
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6B2F1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMT HPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGH VLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDF LKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITW TNQKIRKTFVQRNMFEFKHIKAFDRTFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVI MPGYCVQGTVGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLV HGEAKKMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMVQGMKGRLGHGS RGQVTGGWVDCIIPFFTGLLPEAKKPRLLHGTLIMKDNNFRLVSSEQALKELGLAEHQLRFTCR VHLQDTRKEQETALRVYSHLKSTLKDHCVQHLPDGSVTVESILIQAAAHSEDPGTKVLLVSWTY QVRRMSITSTPGDLTRYCVVCNV hide sequence

RefSeq Acc Id:

XP_017448807 ⟸ XM_017593318

- Peptide Label:

isoform X7

- Sequence:

show sequence

MIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG
AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILL
ETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRTFADNP
GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQMLEV
KMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLRQKIEQEFRVSCYMPANGETV
TLPTSPSIPVGISLGLLKREMVQGMKGRLGHGSRGQVTGGWVDCIIPFFTGLLPEAKKPRLLHG
TLIMKDNNFRLVSSEQALKELGLAEHQLRFTCRVHLQDTRKEQETALRVYSHLKSTLKDHCVQH
LPDGSVTVESILIQAAAHSEDPGTKVLLVSWTYQVRRMSITSTPGDLTRYCVVCNV

hide sequence

Ensembl Acc Id:

ENSRNOP00000026725 ⟸ ENSRNOT00000026725

Ensembl Acc Id:

ENSRNOP00000095330 ⟸ ENSRNOT00000107036

Ensembl Acc Id:

ENSRNOP00000087757 ⟸ ENSRNOT00000101518

RefSeq Acc Id:	XP_063143576 ⟸ XM_063287506
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6B2F1 (UniProtKB/TrEMBL)

Protein Domains

Beta-Casp Metallo-beta-lactamase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3MHC2-F1-model_v2	AlphaFold	Q3MHC2	1-600	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694335

Promoter ID:

EPDNEW_R4860

Type:

initiation region

Name:

Ints11_1

Description:

integrator complex subunit 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	173,318,438 - 173,318,498	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306841	AgrOrtholog
BioCyc Gene	G2FUF-38890	BioCyc
Ensembl Genes	ENSRNOG00000019712	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000026725	ENTREZGENE
	ENSRNOT00000101518	ENTREZGENE
	ENSRNOT00000107036	ENTREZGENE
Gene3D-CATH	3.40.50.10890	UniProtKB/Swiss-Prot
	3.60.15.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7110348	IMAGE-MGC_LOAD
InterPro	Beta_Casp	UniProtKB/Swiss-Prot
	INTS11-like_MBL-fold	UniProtKB/Swiss-Prot
	IntS11_C	UniProtKB/Swiss-Prot
	Metallo-B-lactamas	UniProtKB/Swiss-Prot
	RibonucZ/Hydroxyglut_hydro	UniProtKB/Swiss-Prot
	RMMBL	UniProtKB/Swiss-Prot
	RNA_Proc_MBL-domain	UniProtKB/Swiss-Prot
KEGG Report	rno:298688	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124975	IMAGE-MGC_LOAD
NCBI Gene	298688	ENTREZGENE
PANTHER	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER	UniProtKB/Swiss-Prot
	INTEGRATOR COMPLEX SUBUNIT 11	UniProtKB/Swiss-Prot
Pfam	Beta-Casp	UniProtKB/Swiss-Prot
	IntS11_C	UniProtKB/Swiss-Prot
	Lactamase_B_6	UniProtKB/Swiss-Prot
	RMMBL	UniProtKB/Swiss-Prot
PhenoGen	Ints11	PhenoGen
RatGTEx	ENSRNOG00000019712	RatGTEx
SMART	Beta-Casp	UniProtKB/Swiss-Prot
	Lactamase_B	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF56281	UniProtKB/Swiss-Prot
UniProt	A0A8I6A6F2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B2F1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2UK86	ENTREZGENE, UniProtKB/TrEMBL
	A6IUT8	ENTREZGENE, UniProtKB/TrEMBL
	INT11_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-01-03	Ints11	integrator complex subunit 11	Cpsf3l	cleavage and polyadenylation specific factor 3-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Cpsf3l	cleavage and polyadenylation specific factor 3-like	RGD1306841	similar to RIKEN cDNA 2410006F12	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306841	similar to RIKEN cDNA 2410006F12	RGD1306841_predicted	similar to RIKEN cDNA 2410006F12 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306841_predicted	similar to RIKEN cDNA 2410006F12 (predicted)	LOC298688_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC298688_predicted	similar to RIKEN cDNA 2410006F12 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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