Agbl2 (AGBL carboxypeptidase 2) - Rat Genome Database

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Gene: Agbl2 (AGBL carboxypeptidase 2) Rattus norvegicus
Analyze
Symbol: Agbl2
Name: AGBL carboxypeptidase 2
RGD ID: 1306827
Description: Predicted to enable metallocarboxypeptidase activity and tubulin binding activity. Predicted to be involved in proteolysis. Predicted to be located in ciliary basal body and cytosol. Predicted to be active in centriole and cytoplasm. Orthologous to human AGBL2 (AGBL carboxypeptidase 2); INTERACTS WITH alpha-Zearalanol; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATP/GTP binding protein-like 2; cytosolic carboxypeptidase 2; cytosolic carboxypeptidase 2-like; LOC103690183; LOC366124; RGD1306827; similar to CG32627-PB
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,220,654 - 97,255,905 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl397,220,781 - 97,255,904 (+)EnsemblGRCr8
mRatBN7.2376,764,893 - 76,800,071 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,764,238 - 76,800,214 (+)EnsemblmRatBN7.2
Rnor_6.0379,622,791 - 79,647,402 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,613,171 - 79,646,698 (+)Ensemblrn6Rnor6.0
Rnor_5.0386,319,497 - 86,354,972 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4375,144,314 - 75,178,964 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera375,973,609 - 76,009,281 (+)NCBICelera
RGSC_v3.1375,041,014 - 75,074,718 (+)NCBI
Cytogenetic Map3q24NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
epilepsy  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IBA,IEA,ISO)
ciliary basal body  (IEA,ISO)
cytoplasm  (IBA)
cytosol  (IEA,ISO)
microtubule cytoskeleton  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:17244818   PMID:23085998   PMID:25103237  


Genomics

Comparative Map Data
Agbl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8397,220,654 - 97,255,905 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl397,220,781 - 97,255,904 (+)EnsemblGRCr8
mRatBN7.2376,764,893 - 76,800,071 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl376,764,238 - 76,800,214 (+)EnsemblmRatBN7.2
Rnor_6.0379,622,791 - 79,647,402 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl379,613,171 - 79,646,698 (+)Ensemblrn6Rnor6.0
Rnor_5.0386,319,497 - 86,354,972 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4375,144,314 - 75,178,964 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera375,973,609 - 76,009,281 (+)NCBICelera
RGSC_v3.1375,041,014 - 75,074,718 (+)NCBI
Cytogenetic Map3q24NCBI
AGBL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381147,659,591 - 47,715,369 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1147,659,591 - 47,715,389 (-)Ensemblhg38GRCh38
GRCh371147,681,143 - 47,736,921 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361147,637,719 - 47,692,878 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1147,828,422 - 47,883,671 (-)NCBICelera
Cytogenetic Map11p11.2NCBI
HuRef1147,386,826 - 47,442,523 (-)NCBIHuRef
CHM1_11147,680,423 - 47,736,178 (-)NCBICHM1_1
T2T-CHM13v2.01147,824,574 - 47,880,377 (-)NCBIT2T-CHM13v2.0
Agbl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39290,613,029 - 90,664,781 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl290,613,071 - 90,664,781 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38290,782,685 - 90,834,437 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl290,782,727 - 90,834,437 (+)Ensemblmm10GRCm38
MGSCv37290,622,901 - 90,656,388 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36290,583,566 - 90,635,276 (+)NCBIMGSCv36mm8
Celera292,167,447 - 92,201,166 (+)NCBICelera
Cytogenetic Map2E1NCBI
cM Map250.37NCBI
AGBL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2949,868,323 - 49,924,290 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11149,888,052 - 49,944,878 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,613,564 - 47,669,809 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,163,160 - 48,218,611 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,163,742 - 48,217,869 (-)EnsemblpanPan2panpan1.1
AGBL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11841,960,085 - 42,003,399 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1841,960,912 - 42,002,255 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1840,691,514 - 40,734,468 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01842,616,043 - 42,658,721 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1842,616,217 - 42,658,118 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11842,104,209 - 42,141,564 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01841,657,442 - 41,700,277 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01842,387,511 - 42,430,423 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Agbl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494719,452,568 - 19,509,105 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365621,564,607 - 1,593,273 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365621,563,607 - 1,598,451 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGBL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl214,933,197 - 14,972,397 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1214,933,188 - 14,971,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2216,111,605 - 16,148,424 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGBL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1117,602,673 - 17,679,431 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl117,603,105 - 17,676,105 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038114,892,707 - 114,994,829 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agbl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247671,177,563 - 1,190,568 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247671,176,417 - 1,191,550 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Agbl2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1564,955,704 - 64,991,882 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Agbl2
123 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:510
Count of miRNA genes:254
Interacting mature miRNAs:305
Transcripts:ENSRNOT00000011467, ENSRNOT00000038696, ENSRNOT00000066828, ENSRNOT00000067067, ENSRNOT00000067769
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
61377Edpm3Estrogen-dependent pituitary mass QTL 37.050.038pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)373592611110333156Rat
1358293Bw38Body weight QTL 3860.0000031body mass (VT:0001259)body weight (CMO:0000012)374364268119364268Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)370311536115311536Rat
631200Cm25Cardiac mass QTL 254.80.0001heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)381541464126563126Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat

Markers in Region
BG372703  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8397,219,208 - 97,219,366 (+)Marker Load Pipeline
mRatBN7.2376,763,369 - 76,763,527 (+)MAPPERmRatBN7.2
Rnor_6.0379,610,413 - 79,610,570NCBIRnor6.0
Rnor_5.0386,317,906 - 86,318,063UniSTSRnor5.0
RGSC_v3.4375,141,940 - 75,142,097UniSTSRGSC3.4
Celera375,972,533 - 75,972,690UniSTS
Cytogenetic Map3q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 10 66 158 87 86 55 82 55 6 331 172 9 139 80 89 31 14 14

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000011467   ⟹   ENSRNOP00000011467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl397,221,181 - 97,253,182 (+)Ensembl
mRatBN7.2 Ensembl376,764,238 - 76,797,348 (+)Ensembl
Rnor_6.0 Ensembl379,613,171 - 79,646,698 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109326   ⟹   ENSRNOP00000084139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl397,220,781 - 97,255,903 (+)Ensembl
mRatBN7.2 Ensembl376,764,238 - 76,800,214 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112284   ⟹   ENSRNOP00000080118
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl397,221,181 - 97,255,904 (+)Ensembl
mRatBN7.2 Ensembl376,766,128 - 76,800,214 (+)Ensembl
RefSeq Acc Id: XM_039106792   ⟹   XP_038962720
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,221,200 - 97,255,905 (+)NCBI
mRatBN7.2376,766,128 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106793   ⟹   XP_038962721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,221,200 - 97,255,905 (+)NCBI
mRatBN7.2376,764,959 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106794   ⟹   XP_038962722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,220,654 - 97,255,905 (+)NCBI
mRatBN7.2376,764,893 - 76,800,071 (+)NCBI
RefSeq Acc Id: XM_039106799   ⟹   XP_038962727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,221,200 - 97,249,874 (+)NCBI
mRatBN7.2376,766,128 - 76,794,040 (+)NCBI
RefSeq Acc Id: XM_063284884   ⟹   XP_063140954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,221,200 - 97,255,905 (+)NCBI
RefSeq Acc Id: XM_063284885   ⟹   XP_063140955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,220,654 - 97,255,905 (+)NCBI
RefSeq Acc Id: XM_063284887   ⟹   XP_063140957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,221,200 - 97,255,905 (+)NCBI
RefSeq Acc Id: XM_063284888   ⟹   XP_063140958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,220,654 - 97,255,905 (+)NCBI
RefSeq Acc Id: XM_063284889   ⟹   XP_063140959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,220,773 - 97,255,905 (+)NCBI
RefSeq Acc Id: XM_063284890   ⟹   XP_063140960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,220,654 - 97,249,874 (+)NCBI
RefSeq Acc Id: XM_063284891   ⟹   XP_063140961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,221,200 - 97,249,874 (+)NCBI
RefSeq Acc Id: XM_063284892   ⟹   XP_063140962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8397,220,654 - 97,249,874 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001417691 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417692 (Get FASTA)   NCBI Sequence Viewer  
  NP_001417693 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962720 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962721 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962722 (Get FASTA)   NCBI Sequence Viewer  
  XP_038962727 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140954 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140955 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140957 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140958 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140959 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140960 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140961 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140962 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79472 (Get FASTA)   NCBI Sequence Viewer  
  EDL79473 (Get FASTA)   NCBI Sequence Viewer  
  EDL79474 (Get FASTA)   NCBI Sequence Viewer  
  EDL79475 (Get FASTA)   NCBI Sequence Viewer  
  EDL79476 (Get FASTA)   NCBI Sequence Viewer  
  EDL79477 (Get FASTA)   NCBI Sequence Viewer  
  EDL79478 (Get FASTA)   NCBI Sequence Viewer  
  EDL79479 (Get FASTA)   NCBI Sequence Viewer  
  EDL79480 (Get FASTA)   NCBI Sequence Viewer  
  EDL79481 (Get FASTA)   NCBI Sequence Viewer  
  EDL79482 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011467.7
  ENSRNOP00000080118
  ENSRNOP00000080118.2
  ENSRNOP00000084139
  ENSRNOP00000084139.1
Ensembl Acc Id: ENSRNOP00000011467   ⟸   ENSRNOT00000011467
RefSeq Acc Id: XP_038962722   ⟸   XM_039106794
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962721   ⟸   XM_039106793
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962720   ⟸   XM_039106792
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962727   ⟸   XM_039106799
- Peptide Label: isoform X6
- UniProtKB: D4A3W7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000080118   ⟸   ENSRNOT00000112284
Ensembl Acc Id: ENSRNOP00000084139   ⟸   ENSRNOT00000109326
RefSeq Acc Id: XP_063140955   ⟸   XM_063284885
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063140958   ⟸   XM_063284888
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140960   ⟸   XM_063284890
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063140962   ⟸   XM_063284892
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063140959   ⟸   XM_063284889
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140954   ⟸   XM_063284884
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZX61 (UniProtKB/TrEMBL),   A0A8I5ZPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140957   ⟸   XM_063284887
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZPZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140961   ⟸   XM_063284891
- Peptide Label: isoform X7
- UniProtKB: D4A3W7 (UniProtKB/TrEMBL)
Protein Domains
Peptidase M14

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3W7-F1-model_v2 AlphaFold D4A3W7 1-860 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306827 AgrOrtholog
BioCyc Gene G2FUF-48763 BioCyc
Ensembl Genes ENSRNOG00000008467 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011467.9 UniProtKB/TrEMBL
  ENSRNOT00000109326 ENTREZGENE
  ENSRNOT00000109326.2 UniProtKB/TrEMBL
  ENSRNOT00000112284 ENTREZGENE
  ENSRNOT00000112284.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.3120 UniProtKB/TrEMBL
  Zn peptidases UniProtKB/TrEMBL
InterPro Cytosolic_carboxypeptidase UniProtKB/TrEMBL
  Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene 366124 ENTREZGENE
PANTHER CYTOSOLIC CARBOXYPEPTIDASE UniProtKB/TrEMBL
  CYTOSOLIC CARBOXYPEPTIDASE 2 UniProtKB/TrEMBL
Pfam Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
PhenoGen Agbl2 PhenoGen
PROSITE PEPTIDASE_M14 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008467 RatGTEx
Superfamily-SCOP Zn-dependent exopeptidases UniProtKB/TrEMBL
UniProt A0A8I5ZPZ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZX61 ENTREZGENE, UniProtKB/TrEMBL
  D4A3W7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Agbl2  AGBL carboxypeptidase 2  LOC103690183  cytosolic carboxypeptidase 2-like  Data merged from RGD:9134955 737654 PROVISIONAL
2021-02-18 Agbl2  AGBL carboxypeptidase 2  Agbl2  ATP/GTP binding protein-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103690183  cytosolic carboxypeptidase 2-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Agbl2  ATP/GTP binding protein-like 2   Agbl2_predicted  ATP/GTP binding protein-like 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Agbl2_predicted  ATP/GTP binding protein-like 2 (predicted)  RGD1306827_predicted  similar to CG32627-PB (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1306827_predicted  similar to CG32627-PB (predicted)  LOC366124_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC366124_predicted  similar to CG32627-PB (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL