Mta3 (metastasis associated 1 family, member 3) - Rat Genome Database

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Gene: Mta3 (metastasis associated 1 family, member 3) Rattus norvegicus
Analyze
Symbol: Mta3
Name: metastasis associated 1 family, member 3
RGD ID: 1306803
Description: Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Predicted to be involved in chromatin remodeling and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of G2/M transition of mitotic cell cycle and positive regulation of granulosa cell proliferation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA3 (metastasis associated 1 family member 3); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; INTERACTS WITH 2,6-dinitrotoluene; amphetamine; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100362346; LOC298763; metastasis associated 3; metastasis-associated protein MTA3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,619,575 - 16,739,732 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl616,621,998 - 16,739,485 (-)EnsemblGRCr8
mRatBN7.2610,867,028 - 10,987,221 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,867,011 - 10,986,883 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx611,170,306 - 11,281,199 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0611,479,638 - 11,590,535 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,992,528 - 11,103,617 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.066,904,449 - 7,036,929 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl66,908,684 - 7,031,828 (+)Ensemblrn6Rnor6.0
Rnor_5.066,858,988 - 6,986,437 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.467,060,212 - 7,180,405 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera610,573,980 - 10,694,134 (-)NCBICelera
RGSC_v3.167,060,211 - 7,158,087 (+)NCBI
Cytogenetic Map6q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
Dwarfism  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
nucleoplasm  (IBA,IEA,ISO)
nucleus  (IEA,ISO)
NuRD complex  (IBA,IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The nucleosome remodeling and deacetylase complex in development and disease. Basta J and Rauchman M, Transl Res. 2014 May 10. pii: S1931-5244(14)00166-2. doi: 10.1016/j.trsl.2014.05.003.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11483358   PMID:15454082   PMID:15632090   PMID:20720167   PMID:22075476   PMID:22770845   PMID:22926524   PMID:30816482  


Genomics

Comparative Map Data
Mta3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8616,619,575 - 16,739,732 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl616,621,998 - 16,739,485 (-)EnsemblGRCr8
mRatBN7.2610,867,028 - 10,987,221 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl610,867,011 - 10,986,883 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx611,170,306 - 11,281,199 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0611,479,638 - 11,590,535 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0610,992,528 - 11,103,617 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.066,904,449 - 7,036,929 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl66,908,684 - 7,031,828 (+)Ensemblrn6Rnor6.0
Rnor_5.066,858,988 - 6,986,437 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.467,060,212 - 7,180,405 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera610,573,980 - 10,694,134 (-)NCBICelera
RGSC_v3.167,060,211 - 7,158,087 (+)NCBI
Cytogenetic Map6q12NCBI
MTA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38242,494,110 - 42,756,946 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl242,494,569 - 42,756,947 (+)Ensemblhg38GRCh38
GRCh37242,721,250 - 42,984,086 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36242,649,175 - 42,789,857 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34242,707,321 - 42,848,003NCBI
Celera242,636,184 - 42,775,597 (+)NCBICelera
Cytogenetic Map2p21NCBI
HuRef242,530,841 - 42,670,522 (+)NCBIHuRef
CHM1_1242,725,097 - 42,865,672 (+)NCBICHM1_1
T2T-CHM13v2.0242,499,549 - 42,762,201 (+)NCBIT2T-CHM13v2.0
Mta3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391784,013,483 - 84,131,144 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1784,013,592 - 84,128,945 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381783,706,163 - 83,823,715 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1783,706,163 - 83,821,516 (+)Ensemblmm10GRCm38
MGSCv371784,105,503 - 84,214,245 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361783,614,535 - 83,723,228 (+)NCBIMGSCv36mm8
Celera1788,058,623 - 88,169,758 (+)NCBICelera
Cytogenetic Map17E4NCBI
cM Map1754.53NCBI
Mta3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554419,965,500 - 10,108,467 (+)Ensembl
ChiLan1.0NW_0049554419,965,727 - 10,108,467 (+)NCBIChiLan1.0ChiLan1.0
MTA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21283,623,675 - 83,913,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A83,638,109 - 83,917,640 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A42,593,721 - 42,847,045 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A43,444,119 - 43,694,314 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A43,513,514 - 43,694,314 (+)EnsemblpanPan2panpan1.1
MTA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11734,288,796 - 34,301,636 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1733,899,194 - 34,072,464 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01734,897,656 - 35,043,556 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11734,022,785 - 34,196,744 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01734,038,500 - 34,258,846 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01734,302,876 - 34,476,917 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mta3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629237,563,695 - 37,705,245 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365088,989,681 - 9,132,722 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365088,989,695 - 9,132,694 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl397,601,412 - 97,782,863 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1397,601,403 - 97,782,868 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23103,872,735 - 103,917,631 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11464,495,903 - 64,755,500 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1464,500,593 - 64,684,309 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604547,152,448 - 47,411,044 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mta3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473824,247,752 - 24,403,234 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mta3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v179,125,385 - 9,244,426 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mta3
990 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:59
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000061921
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
1598843Cm63Cardiac mass QTL 632.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)6144788383Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
8693699Alc37Alcohol consumption QTL 372.60.224drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat
2293706Bmd20Bone mineral density QTL 204.30.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)6125740059Rat
2292616Ept15Estrogen-induced pituitary tumorigenesis QTL 154.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
1300128Rf16Renal function QTL 163.89renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6140163351Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6120510098Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1358190Ept1Estrogen-induced pituitary tumorigenesis QTL 14.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)6144788383Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
8693690Alc35Alcohol consumption QTL 352.20.606drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)61371716927053860Rat

Markers in Region
D6Rat149  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2610,894,415 - 10,894,565 (-)MAPPERmRatBN7.2
Rnor_6.067,009,971 - 7,010,120NCBIRnor6.0
Rnor_5.066,959,479 - 6,959,628UniSTSRnor5.0
RGSC_v3.467,161,389 - 7,161,824RGDRGSC3.4
RGSC_v3.467,161,391 - 7,161,540UniSTSRGSC3.4
Celera610,601,087 - 10,601,220UniSTS
RGSC_v3.167,161,391 - 7,161,540RGD
RH 3.4 Map6535.4RGD
RH 3.4 Map6535.4UniSTS
RH 2.0 Map6754.9RGD
SHRSP x BN Map65.4899RGD
Cytogenetic Map6q12UniSTS
D6Got194  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8616,710,944 - 16,711,208 (+)Marker Load Pipeline
mRatBN7.2610,958,400 - 10,958,664 (-)MAPPERmRatBN7.2
Rnor_6.066,942,997 - 6,943,260NCBIRnor6.0
Rnor_5.066,896,534 - 6,896,797UniSTSRnor5.0
RGSC_v3.467,089,929 - 7,090,193RGDRGSC3.4
RGSC_v3.467,089,930 - 7,090,193UniSTSRGSC3.4
RGSC_v3.467,089,611 - 7,090,193UniSTSRGSC3.4
Celera610,663,701 - 10,663,964UniSTS
RGSC_v3.167,089,929 - 7,090,193RGD
Cytogenetic Map6q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
23 13 82 212 91 90 59 158 59 6 489 283 22 190 116 124 31 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039078115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000061921   ⟹   ENSRNOP00000058637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl610,867,011 - 10,956,571 (-)Ensembl
Rnor_6.0 Ensembl66,946,695 - 7,031,828 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079095   ⟹   ENSRNOP00000068747
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl616,624,642 - 16,739,485 (-)Ensembl
mRatBN7.2 Ensembl610,875,472 - 10,986,883 (-)Ensembl
Rnor_6.0 Ensembl66,908,684 - 7,017,561 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096808   ⟹   ENSRNOP00000084094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl616,627,372 - 16,739,485 (-)Ensembl
mRatBN7.2 Ensembl610,867,011 - 10,986,864 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108472   ⟹   ENSRNOP00000084165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl616,621,998 - 16,739,485 (-)Ensembl
mRatBN7.2 Ensembl610,867,011 - 10,986,864 (-)Ensembl
RefSeq Acc Id: NM_001106705   ⟹   NP_001100175
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,628,015 - 16,739,485 (-)NCBI
mRatBN7.2610,875,468 - 10,986,948 (-)NCBI
RefSeq Acc Id: XM_039078110   ⟹   XP_038934038
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,628,015 - 16,739,714 (-)NCBI
mRatBN7.2610,875,473 - 10,987,217 (-)NCBI
RefSeq Acc Id: XM_039078111   ⟹   XP_038934039
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,619,575 - 16,739,719 (-)NCBI
mRatBN7.2610,867,028 - 10,987,218 (-)NCBI
RefSeq Acc Id: XM_039078113   ⟹   XP_038934041
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,624,642 - 16,738,791 (-)NCBI
mRatBN7.2610,867,028 - 10,986,462 (-)NCBI
RefSeq Acc Id: XM_039078114   ⟹   XP_038934042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,624,642 - 16,738,661 (-)NCBI
mRatBN7.2610,867,028 - 10,986,125 (-)NCBI
RefSeq Acc Id: XM_039078115   ⟹   XP_038934043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,639,821 - 16,739,717 (-)NCBI
mRatBN7.2610,887,284 - 10,987,215 (-)NCBI
RefSeq Acc Id: XM_063261370   ⟹   XP_063117440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,624,642 - 16,739,732 (-)NCBI
RefSeq Acc Id: XM_063261371   ⟹   XP_063117441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,624,642 - 16,739,728 (-)NCBI
RefSeq Acc Id: XM_063261372   ⟹   XP_063117442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,629,468 - 16,739,727 (-)NCBI
RefSeq Acc Id: XM_063261373   ⟹   XP_063117443
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,629,468 - 16,739,723 (-)NCBI
RefSeq Acc Id: XM_063261374   ⟹   XP_063117444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8616,619,575 - 16,739,714 (-)NCBI
Ensembl Acc Id: ENSRNOP00000068747   ⟸   ENSRNOT00000079095
Ensembl Acc Id: ENSRNOP00000058637   ⟸   ENSRNOT00000061921
RefSeq Acc Id: XP_038934039   ⟸   XM_039078111
- Peptide Label: isoform X6
- UniProtKB: A6H9L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934041   ⟸   XM_039078113
- Peptide Label: isoform X8
- UniProtKB: D3ZPH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934042   ⟸   XM_039078114
- Peptide Label: isoform X8
- UniProtKB: D3ZPH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934038   ⟸   XM_039078110
- Peptide Label: isoform X5
- UniProtKB: A6H9L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038934043   ⟸   XM_039078115
- Peptide Label: isoform X9
- UniProtKB: A6H9L7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084165   ⟸   ENSRNOT00000108472
Ensembl Acc Id: ENSRNOP00000084094   ⟸   ENSRNOT00000096808
RefSeq Acc Id: NP_001100175   ⟸   NM_001106705
- UniProtKB: A0A0G2JTK6 (UniProtKB/TrEMBL),   A6H9L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117444   ⟸   XM_063261374
- Peptide Label: isoform X7
- UniProtKB: A0A8I6A0K7 (UniProtKB/TrEMBL),   A6H9L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117440   ⟸   XM_063261370
- Peptide Label: isoform X1
- UniProtKB: D3ZPH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117441   ⟸   XM_063261371
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZYK6 (UniProtKB/TrEMBL),   D3ZPH3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117442   ⟸   XM_063261372
- Peptide Label: isoform X3
- UniProtKB: A6H9L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117443   ⟸   XM_063261373
- Peptide Label: isoform X4
- UniProtKB: A6H9L6 (UniProtKB/TrEMBL)
Protein Domains
BAH   ELM2   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTK6-F1-model_v2 AlphaFold A0A0G2JTK6 1-582 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306803 AgrOrtholog
BioCyc Gene G2FUF-38618 BioCyc
Ensembl Genes ENSRNOG00000004685 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000079095 ENTREZGENE
  ENSRNOT00000079095.3 UniProtKB/TrEMBL
  ENSRNOT00000096808 ENTREZGENE
  ENSRNOT00000096808.2 UniProtKB/TrEMBL
  ENSRNOT00000108472 ENTREZGENE
  ENSRNOT00000108472.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.490 UniProtKB/TrEMBL
  4.10.1240.50 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro BAH_dom UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
  ELM2_dom UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  MIER/MTA UniProtKB/TrEMBL
  MTA1_R1 UniProtKB/TrEMBL
  SANT_DNA-bd UniProtKB/TrEMBL
  SANT_eukarya UniProtKB/TrEMBL
  Znf_GATA UniProtKB/TrEMBL
NCBI Gene Mta3 ENTREZGENE
PANTHER METASTASIS-ASSOCIATED PROTEIN MTA3 UniProtKB/TrEMBL
  PTHR10865 UniProtKB/TrEMBL
Pfam BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  GATA UniProtKB/TrEMBL
  MTA_R1 UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PhenoGen Mta3 PhenoGen
PROSITE BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004685 RatGTEx
SMART BAH UniProtKB/TrEMBL
  ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
  ZnF_GATA UniProtKB/TrEMBL
Superfamily-SCOP Homeodomain_like UniProtKB/TrEMBL
UniProt A0A0G2JTK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZYK6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A0K7 ENTREZGENE, UniProtKB/TrEMBL
  A6H9L6 ENTREZGENE, UniProtKB/TrEMBL
  A6H9L7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPH3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-09-08 Mta3  metastasis associated 1 family, member 3  LOC100362346  metastasis associated 3  Data merged from RGD:2318340 737654 APPROVED
2010-05-05 LOC100362346  metastasis associated 3      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-08-29 Mta3  metastasis associated 1 family, member 3  Mta3  metastasis associated 3   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mta3  metastasis associated 3   Mta3_predicted  metastasis associated 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mta3_predicted  metastasis associated 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED