Txndc16 (thioredoxin domain containing 16) - Rat Genome Database

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Gene: Txndc16 (thioredoxin domain containing 16) Rattus norvegicus
Analyze
Symbol: Txndc16
Name: thioredoxin domain containing 16
RGD ID: 1306755
Description: Predicted to be located in endoplasmic reticulum lumen. Orthologous to human TXNDC16 (thioredoxin domain containing 16); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361025; RGD1306755; similar to 5730420B22Rik protein; thioredoxin domain-containing protein 16
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81520,831,541 - 20,905,661 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1520,831,391 - 20,905,452 (-)EnsemblGRCr8
mRatBN7.21518,351,688 - 18,425,833 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,351,694 - 18,425,722 (-)EnsemblmRatBN7.2
Rnor_6.01519,472,522 - 19,547,384 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,473,373 - 19,541,815 (-)Ensemblrn6Rnor6.0
Rnor_5.01523,438,029 - 23,512,690 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41521,024,241 - 21,098,469 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1518,780,144 - 18,854,497 (-)NCBICelera
RGSC_v3.11521,025,091 - 21,098,469 (-)NCBI
Cytogenetic Map15p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
Dibutyl phosphate  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
Soman  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19199708   PMID:21359175  


Genomics

Comparative Map Data
Txndc16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81520,831,541 - 20,905,661 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1520,831,391 - 20,905,452 (-)EnsemblGRCr8
mRatBN7.21518,351,688 - 18,425,833 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,351,694 - 18,425,722 (-)EnsemblmRatBN7.2
Rnor_6.01519,472,522 - 19,547,384 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,473,373 - 19,541,815 (-)Ensemblrn6Rnor6.0
Rnor_5.01523,438,029 - 23,512,690 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41521,024,241 - 21,098,469 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1518,780,144 - 18,854,497 (-)NCBICelera
RGSC_v3.11521,025,091 - 21,098,469 (-)NCBI
Cytogenetic Map15p14NCBI
TXNDC16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381452,430,596 - 52,552,505 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1452,429,472 - 52,553,563 (-)Ensemblhg38GRCh38
GRCh371452,897,314 - 53,019,223 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361451,967,059 - 52,088,963 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1432,764,912 - 32,886,888 (-)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1433,057,647 - 33,180,093 (-)NCBIHuRef
CHM1_11452,836,496 - 52,958,271 (-)NCBICHM1_1
T2T-CHM13v2.01446,637,669 - 46,760,351 (-)NCBIT2T-CHM13v2.0
Txndc16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,371,905 - 45,457,008 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1445,370,922 - 45,457,785 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381445,134,448 - 45,219,551 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1445,133,465 - 45,220,328 (-)Ensemblmm10GRCm38
MGSCv371445,754,123 - 45,839,069 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361444,056,325 - 44,141,271 (-)NCBIMGSCv36mm8
Celera1441,314,858 - 41,399,608 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1422.77NCBI
Txndc16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,593,576 - 10,681,465 (+)Ensembl
ChiLan1.0NW_00495540910,593,693 - 10,680,381 (+)NCBIChiLan1.0ChiLan1.0
TXNDC16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21553,561,951 - 53,684,366 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11452,760,890 - 52,900,786 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01433,027,634 - 33,149,460 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11451,312,237 - 51,433,913 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,299,416 - 51,425,730 (-)EnsemblpanPan2panpan1.1
TXNDC16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1828,672,257 - 28,795,401 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl828,674,519 - 28,795,356 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha828,417,404 - 28,540,530 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0828,839,967 - 28,961,575 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl828,839,985 - 28,961,505 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1828,512,373 - 28,635,313 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0828,578,167 - 28,707,403 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0828,914,842 - 29,036,369 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Txndc16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,474,561 - 76,569,220 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366972,257,486 - 2,344,941 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366972,249,685 - 2,343,297 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TXNDC16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1182,102,736 - 182,203,048 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11182,103,603 - 182,203,048 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TXNDC16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12429,515,739 - 29,619,100 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2429,513,781 - 29,627,668 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605317,786,508 - 17,905,158 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Txndc16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473116,531,651 - 16,629,343 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473116,531,707 - 16,630,293 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Txndc16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11277,817,569 - 77,883,425 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Txndc16
673 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:30
Count of miRNA genes:28
Interacting mature miRNAs:30
Transcripts:ENSRNOT00000008372
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1641913Colcr2Colorectal carcinoma resistance QTL 26.570.0197intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)15231575947315759Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)15278592347785923Rat
5684946Bss98Bone structure and strength QTL 983.90.0026tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)15139411584Rat
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15132342855Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15144836456Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15231575953331089Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151691152132439851Rat

Markers in Region
D15Got26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21518,353,472 - 18,353,629 (+)MAPPERmRatBN7.2
Rnor_6.01519,474,189 - 19,474,345NCBIRnor6.0
Rnor_5.01523,439,696 - 23,439,852UniSTSRnor5.0
RGSC_v3.41521,025,907 - 21,026,064RGDRGSC3.4
RGSC_v3.41521,025,908 - 21,026,064UniSTSRGSC3.4
Celera1518,781,811 - 18,781,967UniSTS
RGSC_v3.11521,025,908 - 21,026,064RGD
RH 3.4 Map15158.2RGD
RH 3.4 Map15158.2UniSTS
Cytogenetic Map15p14UniSTS
RH127680  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81520,831,842 - 20,832,027 (+)Marker Load Pipeline
mRatBN7.21518,352,107 - 18,352,292 (+)MAPPERmRatBN7.2
Rnor_6.01519,472,824 - 19,473,008NCBIRnor6.0
Rnor_5.01523,438,331 - 23,438,515UniSTSRnor5.0
RGSC_v3.41521,024,543 - 21,024,727UniSTSRGSC3.4
Celera1518,780,446 - 18,780,630UniSTS
RH 3.4 Map15145.0UniSTS
Cytogenetic Map15p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000008372   ⟹   ENSRNOP00000008372
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1520,831,391 - 20,905,452 (-)Ensembl
mRatBN7.2 Ensembl1518,351,694 - 18,425,722 (-)Ensembl
Rnor_6.0 Ensembl1519,473,373 - 19,541,815 (-)Ensembl
RefSeq Acc Id: NM_001427814   ⟹   NP_001414743
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81520,831,541 - 20,905,452 (-)NCBI
RefSeq Acc Id: XM_039093784   ⟹   XP_038949712
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81520,831,541 - 20,905,661 (-)NCBI
mRatBN7.21518,351,688 - 18,425,829 (-)NCBI
RefSeq Acc Id: XM_039093785   ⟹   XP_038949713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81520,831,541 - 20,905,515 (-)NCBI
mRatBN7.21518,351,688 - 18,425,833 (-)NCBI
RefSeq Acc Id: XM_039093786   ⟹   XP_038949714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81520,831,541 - 20,893,438 (-)NCBI
mRatBN7.21518,351,688 - 18,413,700 (-)NCBI
RefSeq Acc Id: XM_063274391   ⟹   XP_063130461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81520,831,541 - 20,905,661 (-)NCBI
RefSeq Acc Id: XM_063274392   ⟹   XP_063130462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81520,832,691 - 20,905,515 (-)NCBI
Ensembl Acc Id: ENSRNOP00000008372   ⟸   ENSRNOT00000008372
RefSeq Acc Id: XP_038949713   ⟸   XM_039093785
- Peptide Label: isoform X2
- UniProtKB: A6KDZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949712   ⟸   XM_039093784
- Peptide Label: isoform X1
- UniProtKB: D3ZQK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038949714   ⟸   XM_039093786
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063130461   ⟸   XM_063274391
- Peptide Label: isoform X2
- UniProtKB: A6KDZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414743   ⟸   NM_001427814
- UniProtKB: D3ZQK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063130462   ⟸   XM_063274392
- Peptide Label: isoform X3
Protein Domains
Thioredoxin   TXNDC16 N-terminal   TXNDC16 second thioredoxin-like   TXNDC16 third thioredoxin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZQK4-F1-model_v2 AlphaFold D3ZQK4 1-819 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306755 AgrOrtholog
BioCyc Gene G2FUF-14226 BioCyc
Ensembl Genes ENSRNOG00000006334 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000008372 ENTREZGENE
  ENSRNOT00000008372.9 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
  TXNDC16 UniProtKB/TrEMBL
  TXNDC16_2nd UniProtKB/TrEMBL
  TXNDC16_3rd UniProtKB/TrEMBL
  TXNDC16_N UniProtKB/TrEMBL
NCBI Gene 361025 ENTREZGENE
PANTHER PTHR22699 UniProtKB/TrEMBL
  THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16 UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
  Thioredoxin_6 UniProtKB/TrEMBL
  TXNDC16_2nd UniProtKB/TrEMBL
  TXNDC16_3rd UniProtKB/TrEMBL
  TXNDC16_N UniProtKB/TrEMBL
PhenoGen Txndc16 PhenoGen
RatGTEx ENSRNOG00000006334 RatGTEx
Superfamily-SCOP Thiordxn-like_fd UniProtKB/TrEMBL
UniProt A6KDZ1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZQK4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Txndc16  thioredoxin domain containing 16  RGD1306755_predicted  similar to 5730420B22Rik protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1306755_predicted  similar to 5730420B22Rik protein (predicted)  LOC361025_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361025_predicted  similar to 5730420B22Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL