Pigk (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 2 | 244,289,928 - 244,375,394 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 2 | 244,250,621 - 244,376,030 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 2 | 241,630,021 - 241,715,493 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 241,630,053 - 241,716,134 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 2 | 249,441,703 - 249,527,140 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 247,328,718 - 247,414,157 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 242,234,808 - 242,319,440 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 257,911,099 - 257,997,735 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 257,911,126 - 257,997,733 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 276,578,101 - 276,662,886 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 2 | 250,976,109 - 251,037,852 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 2 | 233,561,027 - 233,646,276 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q45 | NCBI | | | | |
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PIGK (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 1 | 77,088,989 - 77,219,430 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 77,088,987 - 77,219,508 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 1 | 77,554,674 - 77,685,115 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 77,327,254 - 77,457,720 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 77,269,409 - 77,397,132 | NCBI | | | | | Celera | 1 | 75,794,094 - 75,924,500 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | p31.1 | NCBI | | | | | HuRef | 1 | 75,685,143 - 75,815,808 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 77,670,042 - 77,800,504 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 76,927,170 - 77,057,594 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Pigk (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 3 | 152,419,718 - 152,548,705 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 152,419,737 - 152,686,045 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 3 | 152,714,085 - 152,842,926 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 152,714,100 - 152,980,408 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 3 | 152,377,064 - 152,451,979 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 152,651,486 - 152,726,401 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 159,168,468 - 159,243,119 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | H3 | NCBI | | | | | cM Map | 3 | 77.16 | NCBI | | | | |
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Pigk (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955423 | 15,864,430 - 15,970,202 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955423 | 15,864,320 - 15,970,451 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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PIGK (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 1 | 149,669,451 - 149,802,001 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 148,834,055 - 148,962,554 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 76,306,402 - 76,437,003 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 78,392,123 - 78,522,148 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 78,392,123 - 78,522,148 (-) | Ensembl | | | panPan2 | panpan1.1 |
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PIGK (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 6 | 69,572,985 - 69,682,017 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 6 | 69,573,020 - 69,680,477 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 6 | 72,230,731 - 72,338,546 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 6 | 70,160,280 - 70,267,932 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 6 | 70,160,269 - 70,268,650 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 6 | 69,663,208 - 69,770,685 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 6 | 69,609,126 - 69,716,902 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 6 | 70,095,901 - 70,203,311 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Pigk (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024405058 | 88,488,434 - 88,622,525 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936571 | 3,998,773 - 4,132,876 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936571 | 4,002,243 - 4,132,837 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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PIGK (Sus scrofa - pig) |
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PIGK (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 20 | 55,963,094 - 56,079,289 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 55,963,150 - 56,082,663 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666033 | 61,436,501 - 61,551,083 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Pigk (Heterocephalus glaber - naked mole-rat) |
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Pigk (Rattus rattus - black rat) |
|