Clmn (calmin) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Clmn (calmin) Rattus norvegicus
Analyze
Symbol: Clmn
Name: calmin
RGD ID: 1306741
Description: Predicted to enable actin filament binding activity. Predicted to be involved in negative regulation of cell population proliferation and nuclear migration. Predicted to act upstream of or within neuron projection development. Predicted to be located in membrane. Predicted to be part of meiotic nuclear membrane microtubule tethering complex. Predicted to be active in cytoplasm and nuclear outer membrane. Orthologous to human CLMN (calmin); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC299285
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,470,613 - 129,572,079 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6129,478,149 - 129,572,027 (-)EnsemblGRCr8
mRatBN7.26123,707,710 - 123,807,283 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6123,713,507 - 123,807,272 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6123,844,782 - 123,937,370 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06124,140,054 - 124,232,635 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06123,513,746 - 123,607,046 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06128,473,592 - 128,567,267 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,473,570 - 128,567,198 (-)Ensemblrn6Rnor6.0
Rnor_5.06137,670,952 - 137,764,459 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46128,859,942 - 128,954,839 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6121,188,986 - 121,223,785 (-)NCBICelera
RGSC_v3.16128,864,551 - 128,958,576 (-)NCBI
Cytogenetic Map6q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
Bufotalin  (ISO)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibenz[a,h]anthracene  (ISO)
Dibutyl phosphate  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
hexestrol  (ISO)
indometacin  (ISO)
ketoconazole  (ISO)
lead(0)  (ISO)
mestranol  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
succimer  (ISO)
tamoxifen  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
Triptolide  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11386753   PMID:20014094   PMID:22001116  


Genomics

Comparative Map Data
Clmn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86129,470,613 - 129,572,079 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6129,478,149 - 129,572,027 (-)EnsemblGRCr8
mRatBN7.26123,707,710 - 123,807,283 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6123,713,507 - 123,807,272 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6123,844,782 - 123,937,370 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06124,140,054 - 124,232,635 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06123,513,746 - 123,607,046 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06128,473,592 - 128,567,267 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6128,473,570 - 128,567,198 (-)Ensemblrn6Rnor6.0
Rnor_5.06137,670,952 - 137,764,459 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46128,859,942 - 128,954,839 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6121,188,986 - 121,223,785 (-)NCBICelera
RGSC_v3.16128,864,551 - 128,958,576 (-)NCBI
Cytogenetic Map6q32NCBI
CLMN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381495,181,940 - 95,319,908 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1495,181,940 - 95,319,921 (-)Ensemblhg38GRCh38
GRCh371495,648,277 - 95,786,245 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361494,727,618 - 94,855,955 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341494,727,617 - 94,855,955NCBI
Celera1475,704,392 - 75,842,388 (-)NCBICelera
Cytogenetic Map14q32.13NCBI
HuRef1475,832,322 - 75,892,735 (-)NCBIHuRef
CHM1_11495,586,508 - 95,724,496 (-)NCBICHM1_1
T2T-CHM13v2.01489,412,156 - 89,550,109 (-)NCBIT2T-CHM13v2.0
Clmn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912104,729,373 - 104,831,335 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12104,729,376 - 104,831,335 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3812104,763,114 - 104,865,082 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12104,763,117 - 104,865,076 (-)Ensemblmm10GRCm38
MGSCv3712106,001,324 - 106,103,286 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612105,172,807 - 105,266,126 (-)NCBIMGSCv36mm8
Celera12105,993,908 - 106,097,084 (-)NCBICelera
Cytogenetic Map12ENCBI
cM Map1254.91NCBI
Clmn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543817,258,145 - 17,333,333 (+)Ensembl
ChiLan1.0NW_00495543817,258,145 - 17,335,443 (+)NCBIChiLan1.0ChiLan1.0
CLMN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21596,331,347 - 96,472,667 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11495,547,854 - 95,689,173 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01475,805,572 - 75,946,432 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11495,141,770 - 95,180,329 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1495,141,807 - 95,184,042 (-)EnsemblpanPan2panpan1.1
CLMN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1864,087,259 - 64,142,561 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl864,088,613 - 64,120,756 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha863,665,167 - 63,770,741 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0864,345,543 - 64,460,888 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl864,353,143 - 64,460,865 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1864,020,545 - 64,135,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0864,079,395 - 64,194,759 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0864,404,347 - 64,519,672 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Clmn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864010,345,613 - 10,409,459 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936846633,597 - 662,991 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936846633,560 - 662,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CLMN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7116,476,791 - 116,590,265 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.17116,476,789 - 116,590,181 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27123,684,763 - 123,805,701 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CLMN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12473,029,029 - 73,166,695 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2473,030,179 - 73,166,627 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605360,221,222 - 60,352,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Clmn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247347,716,030 - 7,797,796 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247347,716,202 - 7,797,790 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Clmn
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17115,861,274 - 115,954,991 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Clmn
578 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:574
Count of miRNA genes:253
Interacting mature miRNAs:316
Transcripts:ENSRNOT00000065529
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
RH142537  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26123,793,846 - 123,794,056 (+)MAPPERmRatBN7.2
Rnor_6.06128,553,842 - 128,554,051NCBIRnor6.0
Rnor_5.06137,751,030 - 137,751,239UniSTSRnor5.0
RGSC_v3.46128,941,415 - 128,941,624UniSTSRGSC3.4
Celera6121,268,734 - 121,268,943UniSTS
RH 3.4 Map6831.8UniSTS
Cytogenetic Map6q32UniSTS
RH144471  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26123,713,879 - 123,714,080 (+)MAPPERmRatBN7.2
Rnor_6.06128,474,645 - 128,474,845NCBIRnor6.0
Rnor_5.06137,672,919 - 137,673,119UniSTSRnor5.0
RGSC_v3.46128,860,315 - 128,860,515UniSTSRGSC3.4
Celera6121,189,359 - 121,189,559UniSTS
RH 3.4 Map6823.2UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 39 59 6 303 139 11 139 81 92 31 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000065529   ⟹   ENSRNOP00000061235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6129,478,272 - 129,572,027 (-)Ensembl
mRatBN7.2 Ensembl6123,713,507 - 123,807,272 (-)Ensembl
Rnor_6.0 Ensembl6128,473,570 - 128,567,198 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095188   ⟹   ENSRNOP00000079135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6129,478,149 - 129,572,027 (-)Ensembl
mRatBN7.2 Ensembl6123,715,528 - 123,807,272 (-)Ensembl
RefSeq Acc Id: NM_001106755   ⟹   NP_001100225
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,478,272 - 129,572,027 (-)NCBI
mRatBN7.26123,713,507 - 123,807,272 (-)NCBI
Rnor_6.06128,474,272 - 128,567,267 (-)NCBI
Rnor_5.06137,670,952 - 137,764,459 (-)NCBI
RGSC_v3.46128,859,942 - 128,954,839 (-)RGD
Celera6121,188,986 - 121,223,785 (-)RGD
Sequence:
RefSeq Acc Id: XM_008764766   ⟹   XP_008762988
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,470,613 - 129,571,440 (-)NCBI
mRatBN7.26123,707,710 - 123,806,908 (-)NCBI
Rnor_6.06128,473,592 - 128,567,070 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063261773   ⟹   XP_063117843
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,470,613 - 129,571,440 (-)NCBI
RefSeq Acc Id: XM_063261774   ⟹   XP_063117844
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,470,613 - 129,572,079 (-)NCBI
RefSeq Acc Id: XM_063261775   ⟹   XP_063117845
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,470,613 - 129,569,037 (-)NCBI
RefSeq Acc Id: XM_063261776   ⟹   XP_063117846
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,470,613 - 129,569,037 (-)NCBI
RefSeq Acc Id: XM_063261777   ⟹   XP_063117847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,470,613 - 129,506,190 (-)NCBI
RefSeq Acc Id: XR_005505495
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86129,480,596 - 129,571,440 (-)NCBI
mRatBN7.26123,715,831 - 123,806,909 (-)NCBI
RefSeq Acc Id: NP_001100225   ⟸   NM_001106755
- UniProtKB: D4A626 (UniProtKB/TrEMBL),   A6JER4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762988   ⟸   XM_008764766
- Peptide Label: isoform X2
- UniProtKB: A6JER4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000061235   ⟸   ENSRNOT00000065529
Ensembl Acc Id: ENSRNOP00000079135   ⟸   ENSRNOT00000095188
RefSeq Acc Id: XP_063117844   ⟸   XM_063261774
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZQ75 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117843   ⟸   XM_063261773
- Peptide Label: isoform X1
- UniProtKB: A6JER4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117846   ⟸   XM_063261776
- Peptide Label: isoform X5
- UniProtKB: A6JER4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117845   ⟸   XM_063261775
- Peptide Label: isoform X4
- UniProtKB: A6JER4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117847   ⟸   XM_063261777
- Peptide Label: isoform X6
- UniProtKB: A6JER4 (UniProtKB/TrEMBL)
Protein Domains
Calponin-homology (CH)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A626-F1-model_v2 AlphaFold D4A626 1-1021 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306741 AgrOrtholog
BioCyc Gene G2FUF-36373 BioCyc
Ensembl Genes ENSRNOG00000011044 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065529 ENTREZGENE
  ENSRNOT00000065529.4 UniProtKB/TrEMBL
  ENSRNOT00000095188.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  Calponin_act-bd UniProtKB/TrEMBL
  CLMN_CH_first UniProtKB/TrEMBL
  CLMN_CH_second UniProtKB/TrEMBL
  LINC-complex_assoc UniProtKB/TrEMBL
KEGG Report rno:299285 UniProtKB/TrEMBL
NCBI Gene 299285 ENTREZGENE
PANTHER CALMIN UniProtKB/TrEMBL
  MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G UniProtKB/TrEMBL
Pfam PF00307 UniProtKB/TrEMBL
PhenoGen Clmn PhenoGen
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011044 RatGTEx
SMART SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
UniProt A0A8I5ZQ75 ENTREZGENE, UniProtKB/TrEMBL
  A6JER4 ENTREZGENE, UniProtKB/TrEMBL
  D4A626 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-03 Clmn  calmin  Clmn_predicted  calmin (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Clmn_predicted  calmin (predicted)      Symbol and Name status set to approved 70820 APPROVED