Advanced Search (OLGA)

Gene: Ccdc88a (coiled-coil and HOOK domain protein 88A) Rattus norvegicus

Analyze

Symbol:

Ccdc88a

Name:

coiled-coil and HOOK domain protein 88A (Ensembl:coiled coil domain containing 88A)

RGD ID:

1306694

Description:

Enables G-protein gamma-subunit binding activity. Predicted to be involved in several processes, including intracellular signal transduction; positive regulation of signal transduction; and regulation of plasma membrane bounded cell projection organization. Located in COPI-coated Golgi to ER transport vesicle. Orthologous to human CCDC88A (coiled-coil domain containing 88A); INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Akt-phosphorylation enhancer; Ape; coiled coil domain containing 88A; Galpha-interacting vesicle-associated protein; girdin; GIV; Hkrp1; Hook-related protein 1; LOC305605; RGD1306694; similar to hypothetical protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC88A (coiled-coil and HOOK domain protein 88A)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Ccdc88a (coiled coil domain containing 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc88a (coiled-coil and HOOK domain protein 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC88A (coiled-coil and HOOK domain protein 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC88A (coiled-coil domain containing 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc88a (coiled-coil and HOOK domain protein 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC88A (coiled-coil domain containing 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC88A (coiled-coil and HOOK domain protein 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc88a (coiled-coil and HOOK domain protein 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccdc88a (coiled-coil and HOOK domain protein 88A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Ccdc88a (coiled coil domain containing 88A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccdc88a (coiled coil domain containing 88A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC88A (coiled-coil and HOOK domain protein 88A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CCDC88A (coiled-coil and HOOK domain protein 88A)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc88aa (coiled-coil domain containing 88Aa)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Danio rerio (zebrafish):	ccdc88ab (coiled-coil domain containing 88Ab)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Girdin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Girdin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	grdn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	grdn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc88a	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	ccdc88a	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	107,305,199 - 107,453,285 (+)	Ensembl				GRCr8
mRatBN7.2	14	103,104,091 - 103,256,112 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	103,103,513 - 103,252,368 (+)	Ensembl				mRatBN7.2
Rnor_6.0	14	113,771,093 - 113,936,376 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	113,867,209 - 113,932,263 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	113,437,642 - 113,602,573 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	110,376,486 - 110,525,468 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	101,981,223 - 102,133,399 (+)	NCBI		Celera
RGSC_v3.1	14	110,402,673 - 110,553,099 (+)	NCBI
Cytogenetic Map	14	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

microcephaly (ISO)

PEHO syndrome (ISO)

PEHO-like syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,3-dinitrobenzene (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

clobetasol (ISO)

clofibrate (ISO)

cocaine (EXP)

copper(II) sulfate (ISO)

corosolic acid (ISO)

crocidolite asbestos (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

hydrogen peroxide (ISO)

ivermectin (ISO)

leflunomide (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

miconazole (ISO)

nicotine (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

pyridaben (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

serpentine asbestos (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (ISO)

torcetrapib (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of protein kinase activity (ISO)

cell migration (ISO)

cytoplasmic microtubule organization (IBA)

cytoskeleton-dependent intracellular transport (IBA,IEA)

lamellipodium assembly (ISO)

maintenance of protein location in plasma membrane (ISO)

membrane organization (ISO)

positive regulation of cilium assembly (ISO)

positive regulation of epidermal growth factor receptor signaling pathway (ISO)

positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ISO)

positive regulation of protein localization to cilium (ISO)

positive regulation of stress fiber assembly (ISO)

regulation of actin cytoskeleton organization (ISO)

regulation of cell population proliferation (ISO)

regulation of neuron projection development (ISO)

signal transduction (IEA)

small GTPase-mediated signal transduction (ISO)

TOR signaling (ISO)

Cellular Component

cell leading edge (ISO)

centriole (ISO)

centrosome (IBA,ISO)

ciliary basal body (ISO)

COPI-coated Golgi to ER transport vesicle (IDA)

cytoplasm (IBA,IEA)

cytoplasmic vesicle (ISO)

cytosol (ISO)

endoplasmic reticulum (ISO)

Golgi apparatus (ISO)

lamellipodium (ISO)

membrane (ISO)

plasma membrane (ISO)

Molecular Function

actin binding (ISO)

dynein light intermediate chain binding (IBA)

epidermal growth factor receptor binding (ISO)

G-protein alpha-subunit binding (ISO)

G-protein gamma-subunit binding (IPI)

GDP-dissociation inhibitor activity (ISO)

guanyl-nucleotide exchange factor activity (IEA,ISO)

insulin receptor binding (ISO)

microtubule binding (IBA,IEA,ISO)

phosphatidylinositol binding (ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

protein kinase B binding (ISO)

protein kinase C binding (ISO)

protein serine/threonine kinase activator activity (ISO)

SH2 domain binding (ISO)

vascular endothelial growth factor receptor 2 binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Identification and characterization of GIV, a novel Galpha i/s-interacting protein found on COPI, endoplasmic reticulum-Golgi transport vesicles.	Le-Niculescu H, etal., J Biol Chem. 2005 Jun 10;280(23):22012-20. Epub 2005 Mar 4.
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15753085	PMID:15882442	PMID:16139227	PMID:16266428	PMID:19211784	PMID:19778506	PMID:20157114	PMID:20462955	PMID:21415395	PMID:21954290	PMID:23509302	PMID:24211587
PMID:25012178	PMID:25187647	PMID:27621449	PMID:27623382	PMID:27864364

Genomics

Comparative Map Data

Ccdc88a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	107,305,199 - 107,453,285 (+)	Ensembl				GRCr8
mRatBN7.2	14	103,104,091 - 103,256,112 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	103,103,513 - 103,252,368 (+)	Ensembl				mRatBN7.2
Rnor_6.0	14	113,771,093 - 113,936,376 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	113,867,209 - 113,932,263 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	113,437,642 - 113,602,573 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	110,376,486 - 110,525,468 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	101,981,223 - 102,133,399 (+)	NCBI		Celera
RGSC_v3.1	14	110,402,673 - 110,553,099 (+)	NCBI
Cytogenetic Map	14	q22	NCBI

CCDC88A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	55,287,842 - 55,419,856 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	55,287,818 - 55,420,042 (-)	Ensembl			hg38	GRCh38
GRCh37	2	55,514,978 - 55,646,992 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	55,368,482 - 55,500,467 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	55,426,630 - 55,558,614	NCBI
Celera	2	55,355,473 - 55,487,467 (-)	NCBI		Celera
Cytogenetic Map	2	p16.1	NCBI
HuRef	2	55,250,032 - 55,382,309 (-)	NCBI		HuRef
CHM1_1	2	55,444,983 - 55,577,340 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	55,285,045 - 55,417,059 (-)	NCBI		T2T-CHM13v2.0

Ccdc88a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	29,323,521 - 29,460,808 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	29,323,658 - 29,460,808 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	29,373,405 - 29,510,808 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	29,373,658 - 29,510,808 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	29,273,775 - 29,410,812 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	29,273,775 - 29,410,812 (+)	NCBI		MGSCv36	mm8
Celera	11	31,739,265 - 31,872,126 (+)	NCBI		Celera
Cytogenetic Map	11	A3.3	NCBI
cM Map	11	16.61	NCBI

Ccdc88a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	27,617,833 - 27,771,385 (+)	Ensembl
ChiLan1.0	NW_004955424	27,617,833 - 27,771,385 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC88A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	70,906,260 - 71,038,445 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	70,910,212 - 71,042,397 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	55,445,060 - 55,576,479 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	56,585,354 - 56,716,197 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	56,589,221 - 56,715,362 (-)	Ensembl			panPan2	panpan1.1

CCDC88A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	56,167,907 - 56,300,974 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	56,170,479 - 56,300,908 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	56,119,423 - 56,257,932 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	57,166,787 - 57,305,336 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	57,173,896 - 57,305,357 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	56,867,913 - 57,007,335 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	57,147,148 - 57,286,241 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	57,437,657 - 57,577,292 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc88a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	26,767,303 - 26,901,093 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	1,669,983 - 1,804,221 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	1,670,192 - 1,804,056 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC88A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	85,811,127 - 85,941,864 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	85,811,043 - 85,971,162 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	90,618,672 - 90,725,605 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC88A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	51,484,886 - 51,615,066 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	51,484,906 - 51,610,654 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666045	60,105,043 - 60,235,398 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc88a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624833	6,116,686 - 6,260,211 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624833	6,117,260 - 6,260,211 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc88a
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	96,975,645 - 97,136,208 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	184
Count of miRNA genes:	103
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000005388, ENSRNOT00000005487, ENSRNOT00000067591
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	62398852	107398852	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	74255551	109089856	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	74255551	109089856	Rat

Markers in Region

RH128278

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	103,114,153 - 103,114,339 (+)	MAPPER	mRatBN7.2
mRatBN7.2	X	106,466,185 - 106,466,371 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	114,127,696 - 114,127,881	NCBI	Rnor6.0
Rnor_6.0	14	113,781,616 - 113,781,801	NCBI	Rnor6.0
Rnor_5.0	14	113,448,165 - 113,448,350	UniSTS	Rnor5.0
Rnor_5.0	X	112,573,674 - 112,573,859	UniSTS	Rnor5.0
RGSC_v3.4	X	35,694,598 - 35,694,783	UniSTS	RGSC3.4
RGSC_v3.4	14	110,386,185 - 110,386,370	UniSTS	RGSC3.4
Celera	14	101,991,520 - 101,991,705	UniSTS
Celera	X	105,879,207 - 105,879,392	UniSTS
Cytogenetic Map	14	q22	UniSTS

RH133705

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	103,255,748 - 103,255,957 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	113,935,831 - 113,936,039	NCBI	Rnor6.0
Rnor_5.0	14	113,602,210 - 113,602,418	UniSTS	Rnor5.0
RGSC_v3.4	14	110,528,659 - 110,528,867	UniSTS	RGSC3.4
Celera	14	102,132,854 - 102,133,062	UniSTS
Cytogenetic Map	14	q22	UniSTS

RH143665

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	103,253,154 - 103,253,388 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	113,933,237 - 113,933,470	NCBI	Rnor6.0
Rnor_5.0	14	113,599,616 - 113,599,849	UniSTS	Rnor5.0
RGSC_v3.4	14	110,526,065 - 110,526,298	UniSTS	RGSC3.4
Celera	14	102,130,260 - 102,130,493	UniSTS
RH 3.4 Map	14	744.98	UniSTS
Cytogenetic Map	14	q22	UniSTS

BE106537

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	103,119,907 - 103,120,094 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	113,797,237 - 113,797,423	NCBI	Rnor6.0
Rnor_5.0	14	113,463,858 - 113,464,044	UniSTS	Rnor5.0
RGSC_v3.4	14	110,391,940 - 110,392,126	UniSTS	RGSC3.4
Celera	14	101,997,270 - 101,997,456	UniSTS
Cytogenetic Map	14	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001065246	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273284	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010057379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	FQ230491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067591 ⟹ ENSRNOP00000063373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,305,398 - 107,450,420 (+)	Ensembl
mRatBN7.2 Ensembl	14	103,104,693 - 103,249,489 (+)	Ensembl
Rnor_6.0 Ensembl	14	113,867,209 - 113,932,263 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095959 ⟹ ENSRNOP00000083554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,305,199 - 107,452,557 (+)	Ensembl
mRatBN7.2 Ensembl	14	103,103,513 - 103,252,368 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112813 ⟹ ENSRNOP00000086390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,305,398 - 107,453,285 (+)	Ensembl
mRatBN7.2 Ensembl	14	103,103,513 - 103,252,368 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000127862 ⟹ ENSRNOP00000105965

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,305,199 - 107,450,166 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150880 ⟹ ENSRNOP00000106843

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	14	107,305,199 - 107,452,557 (+)	Ensembl

RefSeq Acc Id:

NM_001427796 ⟹ NP_001414725

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,305,398 - 107,450,166 (+)	NCBI

RefSeq Acc Id:

XM_008770470 ⟹ XP_008768692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI
mRatBN7.2	14	103,104,455 - 103,256,112 (+)	NCBI
Rnor_6.0	14	113,771,093 - 113,936,376 (+)	NCBI

Sequence:

show sequence

GGAGCGGCGGAGCGCCCGGGCGTCGCCGAGGCACACGGAGGCTGGCGGGGCTTTTGCAGCCAGA
CGGTCAGGGACACGCCTCGGAGCTCCCGGCCCCGGGCAGAGCCAGGGTGCTGAAGCGAGCGCGA
GGCCGCGGAGGGATGCTGAGCGCCCGGCGAGGGGCGAGCCGCATCTGAGGCGGTGAGGCTGCGG
GCGGACGCTCCCGGCGCCCGGCGCCCGTGCCCGCCGGCGGCCGGAACGCCTAGAGCCTCTCGCC
CAGGTCCAGCCCGGCCCCCTCGGCCCCCACGCTGAGCTTGAGTCCTTGGCGGCCCCTCCGCTGA
CCGGTTCCCCCCGGGAGCGGGACAACCTTGACGGGCTTTTTGTCTCGTGCCCCGGCCGCTCTCC
ACGTCCTCCTCCTCCAGATGCCTTTTTTTCTGCCCCTCCTCACCGGGTGCAGACTGCCAGCGCC
CGCTGCGGCTCAGCGCGGGATTCGGGCTCGTTTTCCCGGGGGGGCTGAGGAGGGAGAGTTCTTT
CCCCTCTTCGATGGGATTTTCCTCCCCTGCCGAAATGGACTTTCATTGATTCCGTCTTACTTCT
GCGTTTACTGACCAATTCCCTGGGCGTATTTGTGGTACTTCCTCCCCCACCCCCTCCTGAATAC
ATAATTTGTAAAATGGAGAACGAAATCTTTACTCCCCTTCTGGAGCAGTTCATGACCAGCCCTT
TGGTCACTTGGGTTAAAACATTTGGACCACTGGCTGCAGGAAATGGGACTAACCTGGATGAGTA
CGTGGCTTTGGTGGATGGGGTATTCTTGAACCAGGTCATGCTCCAAATTAATCCTAAGACGGAG
AGTCAAAGAGTAAATAAAAAAGTCAACAATGATGCTTCTCTTAGAATTCACAATCTATCCATTT
TGGTGAAACAGATAAAATTTTATTATCAGGACACTTTGCAGCAGTTGATTATGATGTCATTACC
AAATATCTTAGTCATTGGCAAAAATCCCTTTTCTGAACAAGGTACAGAAGAAGTTAAAAAGTTG
CTTTTACTCCTACTTGGTTGTGCAGTTCAGTGTCAGAAAAAGGAAGAATTTATTGAAAAAATTC
AAGGTTTAGATTTTGATACGAAAGCAGCAGTTGCCGCACATATTCAAGAGGTCACTCATAATCA
GGAAAATGTGTTTGATCTGCAATGGATGGAAGTGACAGATATGTCTCAGGAAGACACAGAACCA
CTCTTAAAGAGCATGGCCTCACACCTCAGAAGACTCATCGATGAGCGAGATGAACATTCAGAGA
CTATTATAGAACTCTCTGAAGAGCGAGATGGTGTTCATTTTCTACCCCATGCCTCTTCATCTGC
ACAGTCACCCTGTGGTTCTCCAGGCATGAAGCGAACAGAAAGTCGACAGCATCTCTCAGTGGAA
CTGGCTGATGCTAAGGCCAAGATCCGAAGACTTAGGCAGGAATTGGAAGAAAAGACTGAGCAGT
TACTGGACTGTAAACAAGAACTTGAACAAATGGAAGTGGAATTGAAGAGGCTGCAACAGGAGAA
CATGAATTTGCTTTCGGATGCTCGATCTGCTAGAATGTACCGAGACGAATTGGATGCCCTCCGA
GAGAAAGCAGTCAGAGTTGATAAGCTTGAAAGTGAACTCTGTAGATATAAAGAGAGACTACATG
ATATTGAATTTTATAAGGCAAGAGTTGAGGAATTAAAAAAAAATAATCAGGTTTTATTAAAACC
AAAAACTATGCTGGAAGACCAACTAGAAGGAACTCGGGCTCGTTCTGACAAATTACATGAATTA
GAAAAAGAGAATTTACAATTAAAGGCTAAATTGCATGATATGGAAATGGAGCGAGATATGGATA
GAAAGAAGATTGAAGAATTAATGGAAGAAAATATGACTCTGGAAATGGCACAGAAACAAAGTAT
GGATGAGTCATTGCACCTTGGCTGGGAGCTGGAACAGATATCCAGAACTAGTGAACTTGCTGAA
GCACCACAGAAGTCCTTGGGCCATGAGGTAAATGAATTAACATCAAGTAAGTTATTGAAGTTGG
AAATGGAAAACCAGAGTTTGACGAAAACTGTAGAAGAGCTACGGAGTACTATGGACTCTGCAGA
AGGCAGCACTTCCAAAATCCTCAAAGTTGAAAAGGAAAACCAGAGACTGAGTAAAAAGGTTGAA
ATTCTTGAAAATGAAATTATTCAAGAAAAGCAAAGTCTTCAGAATTGTCAAAATTTAAGCAAAG
ATCTAATGAAAGAGAAAGCTCAACTTGAAAAAACAATTGAAACACTCAGAGAAAATTCAGAGAG
GCAGATTAAAATATTGGAGCAGGAAAATGAACATCTCAATCAAACAGTGTCTTCCTTACGGCAG
CGTTCCCAGATTAGTGCTGAGGCGAGAGTGAAGGATATTGAAAAAGAAAATAAAATTCTCCATG
AATCTATCAAAGAAACAAGTGGAAAACTAAGCAAGATTGAATTTGAAAAAAGACAAATGAAAAA
GGAATTAGAGCTTTATAAAGAGAAAGGAGAGCGAGCAGAAGAACTTGAAAACGAGTTGAATCGT
CTTGGAAAGGAGAATGAATTGTTGCAGAAAAAGATAACTAATTTAAAGATTACATGCGAAAAAC
TTGAGACATTAGAACAGGAAAATTCAGAGCTAGAAAGAGAAAATAGGAAATTTAAAAAAACTTT
GGATAGCTTTAAAAACCTTACTTTTCAGTTGGAATCTCTAGAAAAAGAGAATTCCCAACTTGAC
GAAGAAAACTTAGAGCTGCGAAGGAGCGTGGAGTCTTTGAAGTGTGCGAGCATGAAGATGGCCC
AGCTCCAACTGGAGAACAAGGAGCTGGAGAGTGAGAAGGAGCAGCTCAAGAAGGGCTTGGAGCT
CATGAAAGCCTCTTTCAAGAAGACAGAACGCTTAGAAGTTAGCTACCAGGGACTAGACACAGAA
AATCAAAGACTACAAAAAGCTCTAGAAAATAGCAATAAAAAAATCCAACAATTAGAGAGTGAGC
TACAAGACTTAGAGATGGAAAATCAAACATTACAAAAAAACCTAGAAGAACTGAAAATCTCTAG
CAAAAGACTGGAACAACTAGAAAAAGAAAATAAGTCATTAGAGCAAGAGACATCTCAACTTGAA
AAGGACAAGAAACAGTTAGAGAAGGAAAACAAACGACTCCGACAACAAGCAGAAATAAAAGACA
CCACCTTAGAAGAAAATAATGTGAAAATTGGGAATTTGGAAAAAGAAAACAAAACTTTATTCAA
AGAAATTAGTGTATATAAAGAGTCCTGTGTTCGTCTAAAAGAACTAGAAAAGGAAAATAAAGAG
CTTGTGAAAAGAGCAACTATTGATATTAAAACCTTGGTTACATTACGTGAGGATTTAGTCAGTG
AAAAATTGAAGACGCAACAAATGAACAATGATCTGGAGAAATTAACTCATGAGCTTGAGAAGAT
AGGTTTAAATAAAGAGCGGCTCCTACAGGATGAGCAGAGCACTGATGACAGTAGGTACAAACTT
TTGGAATCAAAATTAGAATCCACTCTTAAGAAGTCTCTTGAAATAAAAGAAGAAAAAATCGCTG
CTTTAGAAGCTCGGTTAGAAGAGTCTACAAATTACAATCAGCAATTGCGCCATGAACTTAAAAC
AGTGAAAAAAAATTATGAAGCTCTCAAACAGAGACAAGATGAGGAGAGGATGGTGCAGAGTTCC
CTTCCAATCTCTGGGGAAGACGACAAGTGGGGGCGGGAAAGTCAAGAAGCAACTCGAGAGCTCC
TGAAAGTCAAAGACAGGTTAATTGAAGTAGAAAGAAATAATGCTACGCTGCAAGCAGAGAAGCA
GGCGCTGAAAACTCAACTGAAGCAACTTGAGACACAAAATAATAATTTGCAGGCTCAGATTCTT
GCACTGCAGAGGCAGACAGTGTCATTACAGGAGCAGAATACCACTCTTCAGACACAGAATGCCA
AACTTCAGGTTGAAAATTCTACCCTTAATTCACAAAGTACTTCGCTTATGAACCAGAATGCACA
GCTTCTAATCCAGCAGTCTTCCTTAGAAAATGAAAATGAATCTATAATGAAAGAACGAGAAGAT
TTGAAGTCTCTTTATGATGCTCTGATAAAAGATCATGAGAAGCTGGAACTTCTTCATGAACGGC
AAGCTTCAGAGTATGAGTCTCTGATCTCTAAACATGGCACCCTAAAGTCTGCTCACAAAAATCT
TGAGGTGGAACATAAAGACCTTGAAGACCGTTACAATCAGTTATTAAAACAGAAAGGACAATTG
GAAGATTTGGAAAAAATGATCAAAGTGGAACAGGAAAAAATGCTGCTTGAAAGCAAAAACCATG
AAATGGTAGCCGCAGAGTACAAGAAGCTTTGTGGAGACAATGATAGGTTAAATCATACATACAG
TCAGCTTTTAAAAGAGACTGAAATTTTACAAACGGACCATAAAAATTTGAAAAGTGTTCTAAAT
AATTCTAAATTGGAACAAACAAGATTAGAAGCTGAATTTTCAAAGCTAAAGGAGCAGTATCAGC
AGCTGGATATCACATCTACCAAGCTCAATAACCAGTGTGAGTTGCTCAGCCAACTTAAAGGAAA
TTTAGAGGAAGAAAATCGACATCTACTCGATCAGATACAGACACTGATGCTACAAAACAGAACA
CTGCTGGAACAAAATATGGAAAGCAAGGATCTCTTTCATGTTGAACAAAGACAATACATTGATA
AATTAAATGAATTGAGACGACAGAAAGAGAAATTAGAAGAAAAAATTATGGATCAATACAAATT
TTATGACCCATCTCCTCCTAGAAGGAGAGGCAACTGGATTACTCTAAAAATGAGAAAGTTGATA
AAGTCCAAGAAAGATATTAACCGGGAACGTCAGAAATCTCTAACACTAACACCCACCCGCTCAG
ACTCCAGTGAAGGATTTCTTCAGCTGCCCCATCAAGACAGTCAAGACAGCTCTTCAGTAGGGTC
AAACTCTTTAGAAGATGGCCAAACCCTGGGGACAAAGAAGAGCAGCATGGTTGCACTGAAAAGA
CTGCCCTTTTTGAGGAACAGACCGAAGGATAAAGACAAAATGAAGGCCTGCTACCGTCGTTCCA
TGTCCATGAATGACCTGGTGCAGTCCATGGTCCTAGCAGGAGGACAGTGGACAGGTAGTACTGA
AAATTTGGAGGTCCCTGATGATATTTCCACGGGTAAAAGGAGAAAAGAATTGGGAGCTATGGCC
TTCTCTACTACAGCCATCAACTTTTCAACTGTCAACTCTTCTGCAGCCTTCCGATCCAAGCAAT
TGGTTAATAATAAAGATACTACATCCTTTGAAGATGTAAGTCCACAAGGTATTAGTGATGACTC
TAGTACGGGATCAAGAGTTCATGCTTCAAGACCAGCCAGCCTTGATAGTGGCAGAACATCCACT
AGCAATAGCAATAATAACGCTTCACTCCATGAAGTCAAAGCAGGTGCAGCTAATATCCAAAGCA
GGCCACAAAGCCACAGCAGTGGGGATTTCAGTCTGCTCCATGATCATGAGACTTGGTCTAGCAG
TGGTAGCAGTCCAGTTCAGTATTTGAAAAGACAGACCAGGTCAAGCCCTATGCTCCAGCACAAA
ATGTCTGAAACAGTAGACAGTCAAGCCCATCACAAGATGAACGCTGGCTCCCCAGGAAGTGAAG
TTGTTACTCTACAACAGTTTTTGGAAGAAAGCAACAAGCTTACCTCAATACAGTTGAAGTCCTC
GAGTCAAGAGAATCTTTTAGATGAAGTAATGAAAAGTTTGTCTGTCTCTTCAGACTTTCTGGGG
AAAGACAAGCCAGTTAGCTGTACCCTGGCCAGGTCAGTAAGTGGAAAAGCTCCAGGGGACTTCT
ATGATAGACGGACAGCTAAGCCTGAATTTTTGAGAACTGGTCCTCAGAAGACTGAAGATGCCTA
CTCCATCAGCTCTGCAGGGAAACCTACACCAAGCACTCAAGGGAAGATAAAACTAGTAAAAGAA
ACCTCTGTGTTGAGACAATCAAAAGATAGCAATCCTTATGCCACTTTACCTCGTGCAAGCAGTG
TGATCTCTACTGCTGAAGGAACAACTCGAAGGACAAGCATCCATGATTTTCTGAGCAAGGACAG
TAGACTGCCCGTTTCAGTTGAGCCAGCACCGCCTCCTGCTGGTGGCAGCAGCACCGCAGCCTCT
AATGTGAACAAAGTACAAGAAAGCAGAAATTCAAAAAGCAGGTCTAGGGAGCAACAAAGCTCCT
AATTCAGTGGCCCACTGCATGACATGTGGGCAGAGGGAGAGAAAAGTGTCCTTCAGTTTCTCAG
TGTGAAGACTTTATTTCTGAAGTAACAAGACACCTAGCAACTATAGGAACTATTAAAAACAGTA
AGGAGATTTTAACACATCCCTTCGTGACTAGAGCAGGCAAGAGATATAAACTCCATTCTTCCTT
GAATCAAGGAGCACTACTGGATTCAACTGCCAAAAGTTTTAGAAGGTTTTAGGACACTGTACAG
TGCACTAAGCTCTACTGAATAAAGGACATTCTCTCACTTAAGGACCGAGTGTTTTAAGGTCAAG
TATTCTAAGAACAGCCTACTTCTTTCAACATTTGTTTATTAATTTATCCATGTTTGCTTACTGC
TTCTGCTAAGTATTACCCAAAAGCTAGCCATTTATATTTAGTTGTATAAATCTAAATTAAGTGC
TGTAGTATTTTGTGGAATGTACTATATATCAAGATAGAGAAAATTGTTCTGGCTTGTCAGCCTT
TTTCCATTAGCAGACTGCATGTGTTGGTACGCTGGTTATTGTTTTTGTTTCTAGAGCCAATTGT
TCAGATGCACTGCAAAGGAAACGCAATTCATAAGATATGCAGTAATTTCCATAATGAAATATAA
GAATTATAAAAATTATATATTAATTTTGCCACTTTCCCTGATAAGCTGCACTAGGTATTCACAA
ATGGATCCAAGATAAAGATCATTTTTCTGAAACTTTTTTTAGTGAGATGGTTTTCCAACAAATA
GCATTTACAAGTAAAGTGATTATGTTTTTAACTCATTTCCCTTCTTTACTATTTGGGTTGTGTG
TGTGTGTGTGTTTTTTTTTTTTAATGTGAGAGCTGATTATTGCTTAAGAAGTTTTCTTATGGCA
AAATAATGTAAATAATTTCTATAATCTACATTTTTTCAGGAACTCATTTACTATTAAGGTTGTC
ATTTTTTACTAATAATTTTTGTTTTTGTCCTTTATAATATTATATTAAACTTGATAACTATTAT
AGGTAATCTTAAAATATTTGTATGTGTTTGTTACCTTAAACATTTGAAAAAAGCACAAAAAAGT
AGATTTAGTTAACCCAGAGAAACATCAATTTTTTAGTAGTAGCAATTTTATATCACAGTTTTAT
TTTCTTATGAAGTAAAAAAAAAAAACACATTGCTACTCATTAAGACAAGTTCATTATTTAACAT
AAAAATCAGAATAATCTTTTGAAATGAAAAAATACTATTTTTATTTTAACAGTACACTTCTTAA
GCTCTTATTACCAGCTCTAAAGAACTTTTTGGAATAATTATGCATTCCCTAATGTGTGTTTTAC
AAACTGTGTATCATTACTAACCCAGTAGTCATGACAGAAGTCTCTTTTCTTTGCATCCCTTCTC
CTCCTCCTTTTGTCCCCGCCACCCCGTAATAGGTCACTAACAGGTTGTGTTTATAGTGACCTTT
GGAAACATCGTCAATAAAAAAAGACAAAAAATGTTTTTAGTTGCTCAGAAATTGAAAGTTAGAG
AACTTGGATTTATTTAACTCAGTGCTGCCAGAAAATAATGCTATAAATTAAAGGACTTTGAAAC
TCCTGAATGAAAGGTGCTGTTTAAATGTAAATACAAAGGATTGTTTACTGAAACACAGTACACA
GACTAAAAATCTATTCTCTAGACTTTGAAATCTTCTTCATCATGACTCCTTAGATTCAAATATC
AAATTGGTAAATGAGTATCTTGGCAGTCTAGAGTCAGTTGCATGTAAAAAAAAAATGTAAATTC
ACTGTTGGTTGAGAAGTTGAAAATAAGTGTAGAATTATGTTTTAGCTTAATATAGTAAGTGGGT
AAGTTAGATTTATATTAACTAGCATCTAATTTGCACAATTAGCACACATCCCAGGACAATGAGT
GTGAGGTGACCTAATGAGGGCGAGTAGTAAAGCAATTGGACCTCCCTCTGATATCATAATCTTG
TAACAGGGTCTGCTGAGTTAACCAGCACCTACCACTTCAGCTGAAAATACCTGAAATGTATAGC
ATTGGAGTAGGCCGACCCTGAGGGGAAAAAAAGAGAAAACCAAGGGAATACAATGAGACTACTA
AATTATTCTCAATTATATTAATTGCCTTCCTCATAGCTCTTCAAGAAAGGACTACGTGATTTTT
TTTTTCCACAATCTACTTCAGAAGCAGACTTTGTAGGAAGCTAAGCCAAATGGAAATGAATCCA
AACCATTTTTCTAACCAAGCCTAAACCTACCTATCTGGTTTTATTCCTAAACCTCTATGAACAC
TTTAAAAATCAGAACAACAGCATCAGCCCAGAGCTCTAATAGCATGCCTCCTAGCTGGCCATGG
AAATGTTTAGTTCATGTGTGGCACCTTTCATGCAAGGCATGTTAAAAGCCTATTTAAAAATCAC
TGTGTGTATTATAGAGTTGTAACCACCTCACAAATGGATAACTACAGCCTGAATTGTCTTATAA
CAGTTTATGTCAGGATGTAAAATCAATACTGTACCAAATCTGGAATTGTGATGGGGAATTATGT
ATCCTAAATTACTTTTGTACTTTAAGCTACTTTTTATGAAAAGTGAATTGTCTTTCTTTTCAGC
TATTCATCCTGAGATGTATTTTTTTTCTTGAATATGAATAGTACAAAAAGAGCCCATTTTATAA
TATAAACCTTGATGTACAGGTTAAACTATTTGGACAAGGAAAATACCTTAAAAGGAATGCTTAA
TGGGTAATATTGCACTTATAACACTCTTTGACAAAACCTGATTTTAAAATGTCTTTTTTTATTT
CTACGAGTTTTTCAGTGTTTGCCATTGTACCCACAACTGTTAAAATACCAAATCAAATAATATA
AAAAGCTGTAACATTTCCTTTAAAATTAATGCTAATAAGGTGGTAGAATTGAATGGCAAAACGA
CCTTCCTCTGTGGTGCCTGATGTCCATCACAGGAGTCCCATGCACGACAAGAAACCATTGTTTG
AGTTGTCTTACAGTCACTTTGTTTTTCTTTCATTCTCCTTAAAAATATATATGTTGGACTAACT
GATATAAAAAGAAATAAAAACAAAAGGTAATTTTTTAACAAATTGTTATAGTCATTTTAAAATT
GTATGTTGGCCAATTGTTACTTTTTGCCCTAGAGAACTATTCTTGGGCTTCATAGACTTCATCC
TAATCATTTTGGTTATTAAGATGTTTGGGTAGACTCAGTTCTGTCAGTCCTGAAATAAGTTTAA
GTATGTTTACCAAGAGAAAGCTTAAATTATAAAATAGGTATAGTGAGAATAACAACGGTAGCTC
ATAATAAAATAGAACCATAAACAGTAGTTTGTTGTCCTCCCCCACCCCCTTGGAGTTTTGGGGG
GTGTTAGGAAAGTGCTAACCTTTCACTCGGGACTTTAAGCATGGTAAGCTGGCACTTTACCACT
CAGCTGTAGTCCCAGCCCCTATCTCAGAACTTCTTCTTGTGCTCTATGAACTCTTCTTTTTGAT
ATGAAATAAAATAACTAGGTGATGAACTGAGTGCAGTGATACAGGAAATACATTGAGCCAGTTG
ATAGACGTTGTCTGAACACCAGTGCTGTGGCACCACATTCACTGCCACAGTTGAGTAAGTGACC
AACTGGTAGGTAGAATATATGCTGTGTATGTGCTAGACAGTCATTCAATGATAACACCTCCTGC
TACTTACAATGGCATATTATTTAAAACTTATGGACTGTTTAATTTTGGAATTTTTCATGTAATA
ATTTTGGTTCATTTAACCACAGGTTACTGAAACTTCAGGAATTAAAACTCCTAAGAATGTGGTA
GGCTGAGAAATGATTCTTTGTGGGACTGGAGTGTTGGTTCTTTCAGAGCAGCCAGGTTCCATTT
CCAGCACTGTCCATGCTGCAGCTCATGTCTATCTGTAACCTCCAGCTCCAGGGGAGCCGGTGCC
TTCTCCCTGCCTCCACAGGCAGTAGCCGCAAGTTACAGATCTGCAGGCAGAACCCACAAAATAA
AAACAAACTTCAAAAAATGTATTCACTCTTTTATTTTTACTTACTTGAGGCATCTGTCTTACTA
CATCATTCTTCTGGTGCCTGTTTTCACTATCAACAAGATATCTAAGGTCTACAAACTCTGATTC
TGGTCCTTCATTTTATGTTTATGAGGACCTAGAACTACTTGTTTATTTTAGAGATAGAGTACAG
AGCAGCTAAAA

hide sequence

RefSeq Acc Id:

XM_039092893 ⟹ XP_038948821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI
mRatBN7.2	14	103,104,091 - 103,256,108 (+)	NCBI

RefSeq Acc Id:

XM_063273284 ⟹ XP_063129354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XM_063273285 ⟹ XP_063129355

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XM_063273287 ⟹ XP_063129357

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XR_010057373

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XR_010057374

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XR_010057375

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XR_010057376

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XR_010057377

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XR_010057378

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

RefSeq Acc Id:

XR_010057379

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	107,304,654 - 107,456,104 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414725	(Get FASTA)	NCBI Sequence Viewer
	XP_008768692	(Get FASTA)	NCBI Sequence Viewer
	XP_038948821	(Get FASTA)	NCBI Sequence Viewer
	XP_063129354	(Get FASTA)	NCBI Sequence Viewer
	XP_063129355	(Get FASTA)	NCBI Sequence Viewer
	XP_063129357	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063373.5
	ENSRNOP00000083554
	ENSRNOP00000083554.1
	ENSRNOP00000086390
	ENSRNOP00000086390.1
	ENSRNOP00000105965
	ENSRNOP00000105965.1
	ENSRNOP00000106843.1

RefSeq Acc Id:	XP_008768692 ⟸ XM_008770470
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6A5W7 (UniProtKB/TrEMBL), A6JQB3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVDGVFLNQVMLQINPKTESQRV NKKVNNDASLRIHNLSILVKQIKFYYQDTLQQLIMMSLPNILVIGKNPFSEQGTEEVKKLLLLL LGCAVQCQKKEEFIEKIQGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEVTDMSQEDTEPLLKS MASHLRRLIDERDEHSETIIELSEERDGVHFLPHASSSAQSPCGSPGMKRTESRQHLSVELADA KAKIRRLRQELEEKTEQLLDCKQELEQMEVELKRLQQENMNLLSDARSARMYRDELDALREKAV RVDKLESELCRYKERLHDIEFYKARVEELKKNNQVLLKPKTMLEDQLEGTRARSDKLHELEKEN LQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQKQSMDESLHLGWELEQISRTSELAEAPQK SLGHEVNELTSSKLLKLEMENQSLTKTVEELRSTMDSAEGSTSKILKVEKENQRLSKKVEILEN EIIQEKQSLQNCQNLSKDLMKEKAQLEKTIETLRENSERQIKILEQENEHLNQTVSSLRQRSQI SAEARVKDIEKENKILHESIKETSGKLSKIEFEKRQMKKELELYKEKGERAEELENELNRLGKE NELLQKKITNLKITCEKLETLEQENSELERENRKFKKTLDSFKNLTFQLESLEKENSQLDEENL ELRRSVESLKCASMKMAQLQLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRL QKALENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKK QLEKENKRLRQQAEIKDTTLEENNVKIGNLEKENKTLFKEISVYKESCVRLKELEKENKELVKR ATIDIKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLQDEQSTDDSRYKLLESK LESTLKKSLEIKEEKIAALEARLEESTNYNQQLRHELKTVKKNYEALKQRQDEERMVQSSLPIS GEDDKWGRESQEATRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQILALQR QTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSSLENENESIMKEREDLKSL YDALIKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHKDLEDRYNQLLKQKGQLEDLE KMIKVEQEKMLLESKNHEMVAAEYKKLCGDNDRLNHTYSQLLKETEILQTDHKNLKSVLNNSKL EQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNLEEENRHLLDQIQTLMLQNRTLLEQ NMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQYKFYDPSPPRRRGNWITLKMRKLIKSKK DINRERQKSLTLTPTRSDSSEGFLQLPHQDSQDSSSVGSNSLEDGQTLGTKKSSMVALKRLPFL RNRPKDKDKMKACYRRSMSMNDLVQSMVLAGGQWTGSTENLEVPDDISTGKRRKELGAMAFSTT AINFSTVNSSAAFRSKQLVNNKDTTSFEDVSPQGISDDSSTGSRVHASRPASLDSGRTSTSNSN NNASLHEVKAGAANIQSRPQSHSSGDFSLLHDHETWSSSGSSPVQYLKRQTRSSPMLQHKMSET VDSQAHHKMNAGSPGSEVVTLQQFLEESNKLTSIQLKSSSQENLLDEVMKSLSVSSDFLGKDKP VSCTLARSVSGKAPGDFYDRRTAKPEFLRTGPQKTEDAYSISSAGKPTPSTQGKIKLVKETSVL RQSKDSNPYATLPRASSVISTAEGTTRRTSIHDFLSKDSRLPVSVEPAPPPAGGSSTAASNVNK VQESRNSKSRSREQQSS hide sequence

Ensembl Acc Id:

ENSRNOP00000063373 ⟸ ENSRNOT00000067591

RefSeq Acc Id:	XP_038948821 ⟸ XM_039092893
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZW24 (UniProtKB/TrEMBL), A6JQB3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000083554 ⟸ ENSRNOT00000095959

Ensembl Acc Id:

ENSRNOP00000086390 ⟸ ENSRNOT00000112813

RefSeq Acc Id:	XP_063129354 ⟸ XM_063273284
- Peptide Label:	isoform X3
- UniProtKB:	A6JQB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129355 ⟸ XM_063273285
- Peptide Label:	isoform X4
- UniProtKB:	A6JQB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129357 ⟸ XM_063273287
- Peptide Label:	isoform X5
- UniProtKB:	A6JQB3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414725 ⟸ NM_001427796
- UniProtKB:	A6JQB3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105965 ⟸ ENSRNOT00000127862

Ensembl Acc Id:

ENSRNOP00000106843 ⟸ ENSRNOT00000150880

Protein Domains

Calponin-homology (CH)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYD7-F1-model_v2	AlphaFold	D3ZYD7	1-1512	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306694	AgrOrtholog
BioCyc Gene	G2FUF-14653	BioCyc
Ensembl Genes	ENSRNOG00000004057	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067591.5	UniProtKB/TrEMBL
	ENSRNOT00000095959	ENTREZGENE
	ENSRNOT00000095959.2	UniProtKB/TrEMBL
	ENSRNOT00000112813	ENTREZGENE
	ENSRNOT00000112813.2	UniProtKB/TrEMBL
	ENSRNOT00000127862	ENTREZGENE
	ENSRNOT00000127862.1	UniProtKB/TrEMBL
	ENSRNOT00000150880.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.1490	UniProtKB/TrEMBL
	1.10.418.10	UniProtKB/TrEMBL
InterPro	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	HOOK_N	UniProtKB/TrEMBL
NCBI Gene	305605	ENTREZGENE
PANTHER	HOOK PROTEINS	UniProtKB/TrEMBL
	PTHR18947:SF30	UniProtKB/TrEMBL
Pfam	HOOK_N	UniProtKB/TrEMBL
PhenoGen	Ccdc88a	PhenoGen
PROSITE	PS50021	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004057	RatGTEx
Superfamily-SCOP	Hook domain	UniProtKB/TrEMBL
UniProt	A0A8I5ZW24	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A5W7	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L932_RAT	UniProtKB/TrEMBL
	A0ABK0LW68_RAT	UniProtKB/TrEMBL
	A6JQB3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYD7_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Ccdc88a	coiled-coil and HOOK domain protein 88A	Ccdc88a	coiled coil domain containing 88A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Ccdc88a	coiled coil domain containing 88A	RGD1306694_predicted	similar to hypothetical protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306694_predicted	similar to hypothetical protein (predicted)	LOC305605_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305605_predicted	similar to hypothetical protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM