Plac9 (placenta associated 9) - Rat Genome Database

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Gene: Plac9 (placenta associated 9) Rattus norvegicus
Analyze
Symbol: Plac9
Name: placenta associated 9
RGD ID: 1306662
Description: Orthologous to human PLAC9 (placenta associated 9); INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361105; placenta-specific 9; placenta-specific protein 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,466,231 - 1,481,060 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl161,466,231 - 1,481,434 (-)EnsemblGRCr8
mRatBN7.2161,459,450 - 1,474,275 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,459,456 - 1,474,399 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx161,465,768 - 1,480,604 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0162,611,608 - 2,626,440 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,472,364 - 1,487,198 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0163,851,107 - 3,866,008 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,851,270 - 3,866,008 (+)Ensemblrn6Rnor6.0
Rnor_5.0163,817,143 - 3,831,918 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4161,497,710 - 1,512,542 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera161,435,621 - 1,450,227 (-)NCBICelera
RGSC_v3.1161,497,709 - 1,512,571 (-)NCBI
Cytogenetic Map16p16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Plac9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8161,466,231 - 1,481,060 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl161,466,231 - 1,481,434 (-)EnsemblGRCr8
mRatBN7.2161,459,450 - 1,474,275 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl161,459,456 - 1,474,399 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx161,465,768 - 1,480,604 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0162,611,608 - 2,626,440 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0161,472,364 - 1,487,198 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0163,851,107 - 3,866,008 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl163,851,270 - 3,866,008 (+)Ensemblrn6Rnor6.0
Rnor_5.0163,817,143 - 3,831,918 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4161,497,710 - 1,512,542 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera161,435,621 - 1,450,227 (-)NCBICelera
RGSC_v3.1161,497,709 - 1,512,571 (-)NCBI
Cytogenetic Map16p16NCBI
PLAC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381080,131,661 - 80,145,359 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1080,131,682 - 80,145,359 (+)Ensemblhg38GRCh38
GRCh371081,891,417 - 81,905,115 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361081,882,238 - 81,894,766 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1075,883,196 - 75,895,722 (+)NCBICelera
Cytogenetic Map10q22.3NCBI
HuRef1075,735,716 - 75,748,229 (+)NCBIHuRef
CHM1_11082,175,228 - 82,187,737 (+)NCBICHM1_1
T2T-CHM13v2.01081,000,769 - 81,014,482 (+)NCBIT2T-CHM13v2.0
Plac9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391425,888,356 - 25,903,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1425,887,930 - 25,903,524 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381425,888,403 - 25,902,893 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1425,887,506 - 25,903,100 (-)Ensemblmm10GRCm38
GRCm38.p6 Ensembl1426,027,282 - 26,042,711 (-)Ensemblmm10GRCm38
GRCm38.p6 Ensembl1426,167,405 - 26,182,480 (-)Ensemblmm10GRCm38
MGSCv371426,707,889 - 26,722,379 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361424,721,587 - 24,736,077 (-)NCBIMGSCv36mm8
MGSCv361420,979,255 - 20,993,744 (-)NCBIMGSCv36mm8
Cytogenetic Map14A3NCBI
cM Map1415.41NCBI
Plac9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543713,100,613 - 13,113,555 (+)NCBIChiLan1.0ChiLan1.0
PLAC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2891,755,139 - 91,768,146 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11091,757,423 - 91,773,542 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01076,126,851 - 76,139,908 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11078,784,818 - 78,797,760 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1078,784,823 - 78,797,749 (-)EnsemblpanPan2panpan1.1
PLAC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha429,399,789 - 29,413,870 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0429,577,078 - 29,591,270 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl429,573,340 - 29,592,513 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1429,447,041 - 29,461,101 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0429,649,480 - 29,663,787 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0430,003,643 - 30,017,705 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plac9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721351,721,107 - 51,732,281 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936521213,769 - 226,089 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936521213,830 - 225,006 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1481,889,284 - 81,901,817 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11481,890,265 - 81,901,909 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21488,501,439 - 88,513,083 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLAC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1951,665,265 - 51,677,419 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604812,005,984 - 12,018,485 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plac9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475412,507,948 - 12,521,949 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475412,508,070 - 12,521,886 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Plac9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1132,002,114 - 2,016,204 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plac9
128 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:62
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000014964
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)1638712345387123Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1638712345387123Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133425095Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139568015Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139568015Rat
631524Bp75Blood pressure QTL 750.05arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)161177108157035Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
12903955Kidm69Kidney mass QTL 690.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)168392304234212Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126734272Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16126734272Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126734272Rat

Markers in Region
RH124641  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2161,474,011 - 1,475,632 (-)MAPPERmRatBN7.2
Rnor_6.0163,849,941 - 3,851,561NCBIRnor6.0
Rnor_5.0163,815,984 - 3,817,604UniSTSRnor5.0
Cytogenetic Map16p16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
14 12 63 135 89 88 57 26 57 6 275 122 11 112 74 90 31 8 8

Sequence


Ensembl Acc Id: ENSRNOT00000014964   ⟹   ENSRNOP00000014964
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl161,466,231 - 1,481,323 (-)Ensembl
mRatBN7.2 Ensembl161,459,456 - 1,474,399 (-)Ensembl
Rnor_6.0 Ensembl163,851,270 - 3,866,008 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102769   ⟹   ENSRNOP00000097622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl161,466,231 - 1,480,818 (-)Ensembl
mRatBN7.2 Ensembl161,459,456 - 1,474,154 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114500   ⟹   ENSRNOP00000079223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl161,466,231 - 1,481,277 (-)Ensembl
mRatBN7.2 Ensembl161,459,456 - 1,471,553 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142160   ⟹   ENSRNOP00000107625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl161,466,231 - 1,481,434 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000155836   ⟹   ENSRNOP00000099517
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl161,466,231 - 1,478,768 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000170060   ⟹   ENSRNOP00000109507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl161,466,231 - 1,481,434 (-)Ensembl
RefSeq Acc Id: NM_001108395   ⟹   NP_001101865
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,466,231 - 1,481,052 (-)NCBI
mRatBN7.2161,459,455 - 1,474,275 (-)NCBI
Rnor_6.0163,851,351 - 3,865,551 (+)NCBI
Rnor_5.0163,817,143 - 3,831,918 (+)NCBI
RGSC_v3.4161,497,710 - 1,512,542 (-)RGD
Celera161,435,621 - 1,450,227 (-)RGD
Sequence:
RefSeq Acc Id: XM_039094614   ⟹   XP_038950542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8161,466,231 - 1,481,060 (-)NCBI
mRatBN7.2161,459,450 - 1,474,072 (-)NCBI
RefSeq Acc Id: NP_001101865   ⟸   NM_001108395
- Peptide Label: precursor
- UniProtKB: D4A4Q7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000014964   ⟸   ENSRNOT00000014964
RefSeq Acc Id: XP_038950542   ⟸   XM_039094614
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AT08 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097622   ⟸   ENSRNOT00000102769
Ensembl Acc Id: ENSRNOP00000079223   ⟸   ENSRNOT00000114500
Ensembl Acc Id: ENSRNOP00000109507   ⟸   ENSRNOT00000170060
Ensembl Acc Id: ENSRNOP00000099517   ⟸   ENSRNOT00000155836
Ensembl Acc Id: ENSRNOP00000107625   ⟸   ENSRNOT00000142160

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A4Q7-F1-model_v2 AlphaFold D4A4Q7 1-109 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699904
Promoter ID:EPDNEW_R10428
Type:initiation region
Name:Plac9_1
Description:placenta-specific 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0163,851,304 - 3,851,364EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306662 AgrOrtholog
BioCyc Gene G2FUF-12264 BioCyc
Ensembl Genes ENSRNOG00000011263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014964.7 UniProtKB/TrEMBL
  ENSRNOT00000102769 ENTREZGENE
  ENSRNOT00000102769.2 UniProtKB/TrEMBL
  ENSRNOT00000114500.2 UniProtKB/TrEMBL
  ENSRNOT00000142160.1 UniProtKB/TrEMBL
  ENSRNOT00000155836.1 UniProtKB/TrEMBL
  ENSRNOT00000170060.1 UniProtKB/TrEMBL
InterPro PLAC9 UniProtKB/TrEMBL
KEGG Report rno:361105 UniProtKB/TrEMBL
NCBI Gene 361105 ENTREZGENE
PANTHER PLACENTA-SPECIFIC PROTEIN 9 UniProtKB/TrEMBL
  PTHR37355 UniProtKB/TrEMBL
Pfam PLAC9 UniProtKB/TrEMBL
PhenoGen Plac9 PhenoGen
RatGTEx ENSRNOG00000011263 RatGTEx
UniProt A0A8I5ZMZ4_RAT UniProtKB/TrEMBL
  A0A8I6AT08 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L510_RAT UniProtKB/TrEMBL
  A0ABK0LPB6_RAT UniProtKB/TrEMBL
  A0ABK0LTX2_RAT UniProtKB/TrEMBL
  A6KMI2_RAT UniProtKB/TrEMBL
  D4A4Q7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-03 Plac9  placenta associated 9  Plac9  placenta-specific 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Plac9  placenta-specific 9   Plac9_predicted  placenta-specific 9 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Plac9_predicted  placenta-specific 9 (predicted)      Symbol and Name status set to approved 70820 APPROVED