Advanced Search (OLGA)

Gene: Far1 (fatty acyl CoA reductase 1) Rattus norvegicus

Analyze

Symbol:

Far1

Name:

fatty acyl CoA reductase 1

RGD ID:

1306647

Description:

Predicted to enable alcohol-forming long-chain fatty acyl-CoA reductase activity and alcohol-forming very long-chain fatty acyl-CoA reductase activity. Predicted to be involved in lipid biosynthetic process and long-chain fatty-acyl-CoA metabolic process. Predicted to be located in peroxisomal membrane. Predicted to be active in peroxisome. Human ortholog(s) of this gene implicated in rhizomelic chondrodysplasia punctate type 4. Orthologous to human FAR1 (fatty acyl-CoA reductase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; beta-naphthoflavone.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

fatty acyl-CoA reductase 1; LOC293173; male sterility domain containing 2; male sterility domain-containing protein 2; Mlstd2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FAR1 (fatty acyl-CoA reductase 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Far1 (fatty acyl CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Far1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FAR1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FAR1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Far1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FAR1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FAR1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Far1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Far1 (fatty acyl-CoA reductase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MYH10 (myosin heavy chain 10)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	FAR1 (fatty acyl-CoA reductase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Far1 (fatty acyl CoA reductase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	far1 (fatty acyl CoA reductase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG12268	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	fard-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fard-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1441	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG30427	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG4020	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG5065	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG8306	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG4770	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	FarO	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG34342	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	far1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	far1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	177,078,973 - 177,140,363 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	177,079,150 - 177,161,696 (+)	Ensembl				GRCr8
mRatBN7.2	1	167,644,622 - 167,705,868 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	167,644,677 - 167,705,730 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	175,973,526 - 176,031,557 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	183,159,610 - 183,217,641 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	175,861,729 - 175,919,684 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	178,351,674 - 178,412,838 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	178,351,680 - 178,431,395 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	185,319,679 - 185,380,870 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	171,379,992 - 171,437,818 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	165,509,151 - 165,567,181 (+)	NCBI		Celera
RGSC_v3.1	1	171,512,762 - 171,559,758 (+)	NCBI
Cytogenetic Map	1	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

CATARACTS, SPASTIC PARAPARESIS, AND SPEECH DELAY (ISO)

Desbuquois dysplasia (ISO)

genetic disease (ISO)

rhizomelic chondrodysplasia punctate type 4 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(2,4,5-trichlorophenoxy)acetic acid (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (ISO)

aldrin (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (EXP)

cadmium dichloride (EXP,ISO)

cannabidiol (ISO)

chlordecone (ISO)

chloroethene (ISO)

chlorpyrifos (EXP,ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dibutyl phthalate (ISO)

diethyl phthalate (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

indole-3-methanol (EXP)

indometacin (EXP)

ivermectin (ISO)

L-methionine (ISO)

leflunomide (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

miconazole (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-acetyl-L-cysteine (EXP)

N-nitrosodiethylamine (EXP)

NADP zwitterion (ISO)

NADP(+) (ISO)

nitrates (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

pravastatin (EXP,ISO)

resveratrol (ISO)

rimonabant (ISO)

rotenone (EXP)

SB 431542 (ISO)

sodium arsenate (ISO)

succimer (ISO)

titanium dioxide (ISO)

tremolite asbestos (ISO)

trichloroethene (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ether lipid biosynthetic process (IEA,ISO,ISS)

fatty acid derivative metabolic process (IEA)

glycerophospholipid biosynthetic process (IEA,ISO)

lipid biosynthetic process (IEA)

lipid metabolic process (IEA)

long-chain fatty-acyl-CoA metabolic process (IBA,IEA,ISO)

wax biosynthetic process (ISO,ISS)

Cellular Component

peroxisomal membrane (IEA,ISO,ISS)

peroxisome (IBA,IEA,ISO)

Molecular Function

alcohol-forming long-chain fatty acyl-CoA reductase activity (IEA,ISO,ISS)

alcohol-forming very long-chain fatty acyl-CoA reductase activity (IBA,IEA,ISO)

oxidoreductase activity (IEA)

oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15220348	PMID:15220349	PMID:15489334	PMID:20071337	PMID:21525035	PMID:24108123	PMID:33666503

Genomics

Comparative Map Data

Far1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	177,078,973 - 177,140,363 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	177,079,150 - 177,161,696 (+)	Ensembl				GRCr8
mRatBN7.2	1	167,644,622 - 167,705,868 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	167,644,677 - 167,705,730 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	175,973,526 - 176,031,557 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	183,159,610 - 183,217,641 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	175,861,729 - 175,919,684 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	178,351,674 - 178,412,838 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	178,351,680 - 178,431,395 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	185,319,679 - 185,380,870 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	171,379,992 - 171,437,818 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	165,509,151 - 165,567,181 (+)	NCBI		Celera
RGSC_v3.1	1	171,512,762 - 171,559,758 (+)	NCBI
Cytogenetic Map	1	q33	NCBI

FAR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	13,668,668 - 13,732,346 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	13,667,462 - 13,732,367 (+)	Ensembl			hg38	GRCh38
GRCh37	11	13,690,215 - 13,753,893 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	13,646,847 - 13,710,469 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	13,646,846 - 13,710,467	NCBI
Celera	11	13,815,947 - 13,879,631 (+)	NCBI		Celera
Cytogenetic Map	11	p15.3	NCBI
HuRef	11	13,370,035 - 13,433,296 (+)	NCBI		HuRef
CHM1_1	11	13,688,782 - 13,752,465 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	13,760,976 - 13,824,650 (+)	NCBI		T2T-CHM13v2.0

Far1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	113,113,008 - 113,170,713 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	113,113,041 - 113,170,718 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	113,513,719 - 113,571,506 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	113,513,834 - 113,571,511 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	120,657,376 - 120,713,972 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	113,305,043 - 113,361,639 (+)	NCBI		MGSCv36	mm8
Celera	7	113,477,286 - 113,533,885 (+)	NCBI		Celera
Cytogenetic Map	7	F1	NCBI
cM Map	7	59.21	NCBI

Far1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	28,938,535 - 28,996,622 (+)	Ensembl
ChiLan1.0	NW_004955414	28,938,535 - 28,996,622 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	16,052,192 - 16,116,547 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	16,014,488 - 16,078,863 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	13,774,530 - 13,838,195 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	13,468,757 - 13,531,716 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	13,468,756 - 13,531,716 (+)	Ensembl			panPan2	panpan1.1

FAR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	36,519,710 - 36,587,002 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	36,520,968 - 36,623,388 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	36,023,546 - 36,090,839 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	37,403,049 - 37,470,383 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	37,403,493 - 37,471,216 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	36,661,379 - 36,728,648 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	36,837,499 - 36,905,087 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	37,126,652 - 37,193,960 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Far1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	48,864,944 - 48,922,471 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	4,897,523 - 4,956,602 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	4,898,920 - 4,956,417 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	45,462,210 - 45,605,107 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	45,532,718 - 45,605,591 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	48,832,695 - 48,904,606 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	51,106,120 - 51,170,436 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	51,105,908 - 51,170,550 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	148,675,020 - 148,739,397 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Far1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	5,623,625 - 5,682,464 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624766	5,622,194 - 5,684,076 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Far1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	87,940,885 - 87,975,267 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Far1
413 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	15
Count of miRNA genes:	11
Interacting mature miRNAs:	15
Transcripts:	ENSRNOT00000018532
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578778	Pur4	Proteinuria QTL 4	3.3	0.003	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	1	160111531	262090437	Rat
1354646	Kidm18	Kidney mass QTL 18	5.7		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	266453731	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	137611478	182611478	Rat
2302378	Insul11	Insulin level QTL 11	3.25		blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	1	153679879	198679879	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	132760429	191848948	Rat
70160	Bw18	Body weight QTL 18	5.7		body mass (VT:0001259)	body weight (CMO:0000012)	1	153679879	205813246	Rat
8694166	Bw147	Body weight QTL 147	6.83	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	1	153788989	198788989	Rat
1600397	Edcs4	Endometrial carcinoma susceptibility QTL 4	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	1	176288899	270518180	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	142582336	182383862	Rat
1354636	Lmblg1	Limb length QTL 1	6.4		tibia length (VT:0004357)	tibia length (CMO:0000450)	1	160573753	210707719	Rat
1549837	Hcar15	Hepatocarcinoma resistance QTL 15		0.05	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	162548015	270518180	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
1598853	Memor3	Memory QTL 3	4.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	1	152919152	268496042	Rat
1354634	Kidm12	Kidney mass QTL 12	3.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	1	160573753	210707719	Rat
4889428	Stresp24	Stress response QTL 24		0.05	heart pumping trait (VT:2000009)	absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)	1	165278545	210278545	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
1578759	Uae30	Urinary albumin excretion QTL 30	3.3	0.003	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	160111531	262090437	Rat
61343	Bp28	Blood pressure QTL 28			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	161077990	206077990	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
61347	Bp197	Blood pressure QTL 197	4.2		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	1	168063662	213063662	Rat
61348	Bp30	Blood pressure QTL 30	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	159894717	207261263	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	109493780	193400781	Rat
2303622	Vencon6	Ventilatory control QTL 6		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	1	163992710	208992710	Rat
7771612	Cm80	Cardiac mass QTL 80	8.4		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	1	146080545	243492863	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
1300158	Bp173	Blood pressure QTL 173	3.48		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	1	155359438	194575574	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	140833106	185833106	Rat
737828	Hcas3	Hepatocarcinoma susceptibility QTL 3	4.9		liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	1	153679879	232414077	Rat
1354661	Bw33	Body weight QTL 33	5.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
1358886	Bp260	Blood pressure QTL 260	3.67		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	160574007	235238518	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	116099376	191260518	Rat
724531	Uae5	Urinary albumin excretion QTL 5	4		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	1	160111426	262090599	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	132760429	191848948	Rat
1354580	Scort1	Serum corticosterone level QTL 1	3.4		blood corticosterone amount (VT:0005345)	blood corticosterone level (CMO:0001172)	1	154961463	266453731	Rat
70209	Niddm23	Non-insulin dependent diabetes mellitus QTL 23	2.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	162753891	207753891	Rat
634315	Niddm45	Non-insulin dependent diabetes mellitus QTL 45	7.16		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	153680016	182383862	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
61379	Bp44	Blood pressure QTL 44	19.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	153680016	183564652	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
2312420	Pur17	Proteinuria QTL 17	7.1	0.0001	urine protein amount (VT:0005160)	urine total protein excretion rate (CMO:0000756)	1	172718770	228180370	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
2312558	Glom17	Glomerulus QTL 17	3.9	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	1	175967553	200707874	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
1582204	Livw1	Liver weight QTL 1	3.6	0.0003	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	1	170078537	182384005	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	178317588	Rat
1354610	Bw34	Body weight QTL 34	4.1		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	266453731	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1354620	Kidm19	Kidney mass QTL 19	4		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	1	160573753	210707719	Rat
8693608	Alc24	Alcohol consumption QTL 24	2.3	0.74	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	1	159863716	177663210	Rat
1576310	Schws2	Schwannoma susceptibility QTL 2		0.029	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	1	153788989	198788989	Rat
1354618	Kidm15	Kidney mass QTL 15	5		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	1	165707719	210707719	Rat
6903303	Scl34	Serum cholesterol QTL 34	2.5	0.0033	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	173363824	227535316	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	180021436	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760429	191190115	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
631548	Bp88	Blood pressure QTL 88	5	0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	140915717	185915717	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	132760429	191848948	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat
7411599	Foco11	Food consumption QTL 11	18.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	1	153788989	198788989	Rat
1354602	Bw35	Body weight QTL 35	12.2		body mass (VT:0001259)	body weight (CMO:0000012)	1	160573753	210707719	Rat

Markers in Region

BI288983

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	167,647,134 - 167,647,227 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	178,354,140 - 178,354,232	NCBI	Rnor6.0
Rnor_5.0	1	185,322,172 - 185,322,264	UniSTS	Rnor5.0
RGSC_v3.4	1	171,382,289 - 171,382,381	UniSTS	RGSC3.4
Celera	1	165,511,414 - 165,511,505	UniSTS
RH 3.4 Map	1	1315.9	UniSTS
Cytogenetic Map	1	q34	UniSTS

BE115879

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	167,647,094 - 167,647,271 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	178,354,100 - 178,354,276	NCBI	Rnor6.0
Rnor_5.0	1	185,322,132 - 185,322,308	UniSTS	Rnor5.0
RGSC_v3.4	1	171,382,249 - 171,382,425	UniSTS	RGSC3.4
RH 3.4 Map	1	1318.3	UniSTS
Cytogenetic Map	1	q34	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001439737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006230020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC082015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473956	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018532 ⟹ ENSRNOP00000018532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	177,079,174 - 177,140,360 (+)	Ensembl
mRatBN7.2 Ensembl	1	167,644,690 - 167,705,730 (+)	Ensembl
Rnor_6.0 Ensembl	1	178,351,680 - 178,431,395 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076430 ⟹ ENSRNOP00000068284

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	177,079,175 - 177,139,733 (+)	Ensembl
mRatBN7.2 Ensembl	1	167,644,677 - 167,704,626 (+)	Ensembl
Rnor_6.0 Ensembl	1	178,351,695 - 178,411,591 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076756 ⟹ ENSRNOP00000068069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	177,079,175 - 177,161,696 (+)	Ensembl
mRatBN7.2 Ensembl	1	167,657,147 - 167,702,703 (+)	Ensembl
Rnor_6.0 Ensembl	1	178,351,763 - 178,409,668 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076925 ⟹ ENSRNOP00000068155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	178,351,695 - 178,390,194 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128412 ⟹ ENSRNOP00000108415

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	177,079,150 - 177,140,361 (+)	Ensembl

RefSeq Acc Id:

NM_001011933 ⟹ NP_001011933

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	177,079,330 - 177,137,193 (+)	NCBI
mRatBN7.2	1	167,644,832 - 167,702,704 (+)	NCBI
Rnor_6.0	1	178,351,850 - 178,409,668 (+)	NCBI
Rnor_5.0	1	185,319,679 - 185,380,870 (+)	NCBI
RGSC_v3.4	1	171,379,992 - 171,437,818 (+)	RGD
Celera	1	165,509,151 - 165,567,181 (+)	RGD

Sequence:

show sequence

GGCTGCGCTGAGATTTGGTGACTGAGGAAGGGACCCAGAGACTCCTTGAACAACTAAGTCACAA
TGGTCTCAATCCCAGAATACTATGAAGGCAAAAACATCCTCCTCACAGGAGCCACTGGTTTCTT
AGGGAAGGTGCTTCTGGAAAAGTTGCTGAGATCTTGTCCTAAGGTGAATTCAGTCTATGTTTTG
GTGAGGCAAAAAGCTGGACAGACACCCCAAGAGCGAGTGGAAGAAATCCTCAGTGGCAAGCTTT
TTGACAGGTTGAGAGATGAAAATCCAGATTTTAGACAGAAAATTATAGCAATCAACAGTGAACT
CACCCAACCTAAACTGGCTCTCAGTGAAGAAGATAAGGAGATCATTATAGATTCTACCAATGTC
ATATTTCACTGTGCAGCTACTGTAAGATTTAATGAAAATTTAAGAGATGCTGTTCAGTTAAATG
TGATTGCTACACGACAGCTCATTCTCCTTGCACAGCAAATGAAGAATCTGGAAGTGTTCATGCA
TGTCTCAACAGCATACGCCTACTGCAATCGAAAGCATATTGACGAAGTAGTTTATCCACCCCCT
GTAGATCCCAAGAAGCTGATTGATTCCTTAGAATGGATGGATGATGGCCTAGTAAATGATATTA
CACCAAAATTGATAGGCGACAGACCTAATACATACATATACACCAAGGCGTTGGCAGAATATGT
TGTGCAGCAAGAAGGAGCAAAGCTAAATGTTGCAATTGTAAGGCCGTCGATTGTTGGTGCCAGT
TGGAAAGAACCTTTTCCAGGATGGATTGATAACTTTAATGGACCAAGTGGTCTCTTCATTGCGG
CAGGGAAAGGAATTCTTCGAACAATGCGTGCCTCCAACAATGCCCTTGCAGATCTCGTTCCTGT
AGATGTAGTTGTCAACACGAGCCTTGCTGCAGCCTGGTATTCCGGAGTTAATAGACCAAGAAAC
ATCATGGTGTATAATTGCACAACAGGCAGCACTAATCCTTTCCACTGGGGGGAAGTTGGAGATT
ATCTAAATCATTCCTTCAAGACGAATCCTTTAAACCAAGTATTCAGGCACCCCTATGTTAAGTT
CTATTCCAACAACCTAATGCTTCATTATTGGAAGGGTGTCAAACATACAGTACCTGCATTATTG
CTCGATCTTGCACTCAGGTTGACAGGTCAGAAACCGTGGATGATGAAAACAATCACTCGTCTTC
ACAAAGCCATGGTATTCCTTGAATATTTTACAAGTAACTCTTGGGTTTGGAATACTGATAATGT
CAATATGTTAATGAACCAGCTAAACCCTGAAGATAAAAAGACCTTTAATATTGATGTACGACAG
TTACATTGGGCAGAATATATAGAGAACTACTGCATGGGGACTAAAAAATATGTATTGAATGAAG
AGATGTCGGGCCTCCCTGCAGCTAGAAAGCATCTGAACAAGTTGCGGAATATCCGTTATGGTTT
CAATACAATCCTTGTGATACTTATCTGGCGCATTTTTATTGCAAGATCACAAATGGCAAGAAAC
ATCTGGTACTTTGTGGTTAGTCTGTGTTACAAATTTCTGTCATACTTCCGAGCATCCAGCACTA
TGAGATACTGAAGACCAAGAATTTAGCATTAGAACATCTATGCATATGATGATCTAAATGCATA
AAATGTAAAATGTACTTAAGTCATCTCACCTTTCGTTAAGACATTAAACCATCTTAAATTGGAA
AAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006230017 ⟹ XP_006230079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	177,078,973 - 177,140,363 (+)	NCBI
mRatBN7.2	1	167,644,622 - 167,705,868 (+)	NCBI
Rnor_6.0	1	178,351,675 - 178,412,838 (+)	NCBI
Rnor_5.0	1	185,319,679 - 185,380,870 (+)	NCBI

Sequence:

show sequence

GCAGCCGGTCGGGGGCGGTGAAAAGCGAGTGAGGAGAGCGCGACGGCGGCGTAGCCATCGCTGA
GAGGAGAGCGAGGCCCGAGCTTCCGCATCGAGATTTGGTGACTGAGGAAGGGACCCAGAGACTC
CTTGAACAACTAAGTCACAATGGTCTCAATCCCAGAATACTATGAAGGCAAAAACATCCTCCTC
ACAGGAGCCACTGGTTTCTTAGGGAAGGTGCTTCTGGAAAAGTTGCTGAGATCTTGTCCTAAGG
TGAATTCAGTCTATGTTTTGGTGAGGCAAAAAGCTGGACAGACACCCCAAGAGCGAGTGGAAGA
AATCCTCAGTGGCAAGCTTTTTGACAGGTTGAGAGATGAAAATCCAGATTTTAGACAGAAAATT
ATAGCAATCAACAGTGAACTCACCCAACCTAAACTGGCTCTCAGTGAAGAAGATAAGGAGATCA
TTATAGATTCTACCAATGTCATATTTCACTGTGCAGCTACTGTAAGATTTAATGAAAATTTAAG
AGATGCTGTTCAGTTAAATGTGATTGCTACACGACAGCTCATTCTCCTTGCACAGCAAATGAAG
AATCTGGAAGTGTTCATGCATGTCTCAACAGCATACGCCTACTGCAATCGAAAGCATATTGACG
AAGTAGTTTATCCACCCCCTGTAGATCCCAAGAAGCTGATTGATTCCTTAGAATGGATGGATGA
TGGCCTAGTAAATGATATTACACCAAAATTGATAGGCGACAGACCTAATACATACATATACACC
AAGGCGTTGGCAGAATATGTTGTGCAGCAAGAAGGAGCAAAGCTAAATGTTGCAATTGTAAGGC
CGTCGATTGTTGGTGCCAGTTGGAAAGAACCTTTTCCAGGATGGATTGATAACTTTAATGGACC
AAGTGGTCTCTTCATTGCGGCAGGGAAAGGAATTCTTCGAACAATGCGTGCCTCCAACAATGCC
CTTGCAGATCTCGTTCCTGTAGATGTAGTTGTCAACACGAGCCTTGCTGCAGCCTGGTATTCCG
GAGTTAATAGACCAAGAAACATCATGGTGTATAATTGCACAACAGGCAGCACTAATCCTTTCCA
CTGGGGGGAAGTTGAATACCATGTAATTTCCACTTTCAAGAGGAATCCTCTCGAACAGGCCTTC
AGACGGCCCAATGTAAATCTAACCTCCAATCACCTTTTATATCATTACTGGATTGCTGTTAGCC
ATAAGGCCCCAGCATTCCTGTATGATATCTACCTCAGGATGACTGGAAGAAGCCCAAGGATGAT
GAAAACAATCACTCGTCTTCACAAAGCCATGGTATTCCTTGAATATTTTACAAGTAACTCTTGG
GTTTGGAATACTGATAATGTCAATATGTTAATGAACCAGCTAAACCCTGAAGATAAAAAGACCT
TTAATATTGATGTACGACAGTTACATTGGGCAGAATATATAGAGAACTACTGCATGGGGACTAA
AAAATATGTATTGAATGAAGAGATGTCGGGCCTCCCTGCAGCTAGAAAGCATCTGAACAAGTTG
CGGAATATCCGTTATGGTTTCAATACAATCCTTGTGATACTTATCTGGCGCATTTTTATTGCAA
GATCACAAATGGCAAGAAACATCTGGTACTTTGTGGTTAGTCTGTGTTACAAATTTCTGTCATA
CTTCCGAGCATCCAGCACTATGAGATACTGAAGACCAAGAATTTAGCATTAGAACATCTATGCA
TATGATGATCTAAATGCATAAAATGTAAAATGTACTTAAGTCATCTCACCTTTCGTTAAGACAT
TAAACCATCTTAAATTGGAGCGTGGAGTAAATTATGGTCCATTTTATGTAACATTTTAATGTTT
ATGCTCAAAACCTAGTGAACACACTGTGGTATGCCAGCTCAGATCTGCAATAGTCACTTAAACT
ATGATTCAACATTTTAATCCTTGGAATGCAAAGGATAGGAAGAGGGAAGAAGTGGGGCTATGGG
AATATTGACCAGTATAACTGTGCAGTTCTGGAACATACTAATTAAAATATGCCTTAACATGCAG
TCCTAATATTCAGTGCAATGGAAAATTGCAGACAGAAGGCCTAGATAAATTAGTTAAGTATTTG
ATTTGATTCTTCAATGTTGATTTCTTTTTTTTTTTTTTTTGAAATCCTTTAAGAGGTGGGGTTT
AGTTTTGCTAAAGACCACAGCCATGTATTTTTTTTTTCTTATAAGTTACAGGTGTTATCCTATT
CAAAGACTTGTTCTAATTTTCTTTCTGAATAAATGTGTGTTGTATATCATTTTCCTATAAGTAA
TTAGTCGCTCTTATTATCAGAAGGCCAAATATTATTCTAAAGACACTAATAGATCTGAATGGAT
TTAAGATTCTGTATCAATGTATATACTCTGTGCATTTGAAGCAAAGTGAAAACATGCACAGTAA
AACTGTGTTCATATCAAACGAATTGGAAACCATTTTTTCTAGTCCACATTTCGATCAAATGGAA
CTCTGGTGAGATGTGTTTTCATTTTGAAGAGGATTTCTTGAGACTTGATTAAAGGTGGGATTGG
GGAAGGATTCATTATACTTACTCTCCCTTAAAAATTTTCTCATAGGACTTGCCCCATATGAACA
TGCATTATTATGAAGGAACGTAGTTGCAGCTTTTAACATTAAGAAAATGCCCTCACGTGTTTAC
CAACACGTACTAATTTTGACCTTGAAAGCTGAATTCCTTTAAAAATGAATAATGCATAAGTATG
TGTGTAAAATTAAATAAAAAGTTTTTACCATGTAAAGTAGCAAACTGTTCAATGAGTTTCAAGT
CATCATTTCTTTGCATGTTGTTTTAGCTTTAGAAAGACATGCGTTATAGAAACAAGTAATAGCA
AGAAACTGATGTATATTTATTAATACATTATAATTCCCTTTAAATCTTACTAGTTTGTTACTAT
TTTATCATATTTTAATGGCTTGTTCAGCATAACACAGTTATAATTAAGCTGATCAAGTTGTACT
ACATTTTAAATCATCAGCAGTGTATCTTGAAAGTGCTTAAAAGGTTAGTAAATAGTACAAGAAA
TAAAATGTAACTTTACATTTTAATTTTTTGTCAATTAAAATATAATGTAGAAGAAGTTTATTTT
ACTATTGTGGAAAACAAAATGTAAAGGAAACCACCTTTTTCCATACTGGTGTATAATCTTGAAA
AGAAAAAAAAAAATGCTTCTGTGTTGAAGCCAAACTTTGTGTAGTAAAACTTTTAAACATTATT
TTAAAAGAAATATGTATGTAAATATCTGTGTATTCTTTGGAATGACCCTGAAGTCTCTGGTCTA
GGACCATGCCTGTGTAAGGTGTGAGAGACCATGATGGTGTGTGAAAATGGAATAAATGATGCCT
TTGATTTAAGGTGGCCCATATAATATACATTGAGTACTCCATGTCTCCAAATGTATTTCCATGA
TGTAATGAAGACACACTAACCTTTTTATGCTTTTTATACATCTGCCAAAATATACTGCGAATCT
GATAAATTGTCTTTGGGTCTCTGAAAAGAATCAAGTGCAATGTGGGCAGGCCTGTAAAGTGAAC
TGGATGTGTGTCTTCTGTGTTACTGATCTGTGATCTAGTTTAATGAACTGCTAACTCAGGCTGT
GCTGAGGTCAAATTAATTGTATGTGTTTAGAATTCTGTTGTCAAAGGGAAGGTAATGAATAAAT
GATGCTCATCCTGGAATTTGTATTTGAAATTAGTATGGGGTCAAATGTGAGATTGTTGATCTTT
ATCAGCTAGACTTCGGATTCATATTTAAAGAGTCATGTTTAAAGAGTCTGGAGATGTATTCTGT
TTATAATTTGCTAGACAATGTTTTTAGTTCTCATTATATTTTCCATATAGAGTATTCAATAGGA
CAAGTCTATAAAATTATTTCATTCACCTCATTTATCAAAACTGTATTCTGAACCATTTAGGGTT
TTCCCCTTATCTTTCCTTCTCTGAACTCTGGCATACATATTTGTACACTGTTATGTCATTGTAA
CTATTTAATTGCCTTGGCAATGCTTAATGTATCTTAACACTTAGTTCAGAAAAGCATGACCAGG
TCATATGTTGTTTGACTTAAGGATGACATAGAATAAGTTTCTCCAGTCTGCCAGATAAAGCTCA
GTAGTGGGAGGGGACTCAGACCTCTCCCCTTTGTGTTTGTCTGTAGAAACTGATAAGAAAACTT
TTGTGGGGTTTTTGTTTGTTTGTTTGTTTAAGTGTAAACTGATAATCTTTTATAAGAAGTAAAT
AGAAACATTATTGGGTGCCTTTGTTTGTAAACCAAAAAGTAATAAATGAATCCCTATATTTCTA
TTATAGCATCTATTGTATTTTTACATTGTAGAAACCGTCCGTGAGTTAAAATGGCTACAATGAC
AGGAAGTAGTCCTTGAATCTTTTTTTTCTTAGGTGTCCTCATCTATTCTCACCATCTTTTTATT
TATGTCTTGAGTTGTTCACACAGCACTTTAGGGGGAAGCATATAGGCAGAATGAACATTTATTT
TAAAGTATTTTTATATAGTAATTAATAATGAGGCAGATTTCTGTTTTGTTTTTTAATGTAAATA
GAGCCCGGAGACCACCAGTGTGTTCCTAAGATGAATGGCATTGTGTTAGTTTATAGGTTCTTCG
CCAGTAATTGATCTGACTTCATTTAAAGGGTTATTCATTCTCATAGAGATTCAGTGAAGCACTT
GGGGGAGTGTGGCAGGATGGGGTTGGAGTGTAATTGGCTTTGTAAGCATTCCTTTCTAGGCTGA
CTTCCAGCTCTGCCTTGAAACCGTTTGCACTGACTTGCTCTGCTTTAAGAAAAACATTCTAACT
TTGCATGAGAAGCTTAGAGAAAAGGATATGTGCTGCGTAACTTATTACAAAAATGAGTTCATCA
GTCTGTTTATATATGAAATATTTTCTTAATAAAGAAAATTTGAGCAACATTAA

hide sequence

RefSeq Acc Id:

XM_006230018 ⟹ XP_006230080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	177,079,245 - 177,140,363 (+)	NCBI
mRatBN7.2	1	167,644,755 - 167,705,243 (+)	NCBI
Rnor_6.0	1	178,351,841 - 178,409,668 (+)	NCBI
Rnor_5.0	1	185,319,679 - 185,380,870 (+)	NCBI

Sequence:

show sequence

CCTGGGCCGGGCTGCGCTGAGATTTGGTGACTGAGGAAGGGACCCAGAGACTCCTTGAACAACT
AAGTCACAATGGTCTCAATCCCAGAATACTATGAAGGCAAAAACATCCTCCTCACAGGAGCCAC
TGGTTTCTTAGGGAAGGTGCTTCTGGAAAAGTTGCTGAGATCTTGTCCTAAGGTGAATTCAGTC
TATGTTTTGGTGAGGCAAAAAGCTGGACAGACACCCCAAGAGCGAGTGGAAGAAATCCTCAGTG
GCAAGCTTTTTGACAGGTTGAGAGATGAAAATCCAGATTTTAGACAGAAAATTATAGCAATCAA
CAGTGAACTCACCCAACCTAAACTGGCTCTCAGTGAAGAAGATAAGGAGATCATTATAGATTCT
ACCAATGTCATATTTCACTGTGCAGCTACTGTAAGATTTAATGAAAATTTAAGAGATGCTGTTC
AGTTAAATGTGATTGCTACACGACAGCTCATTCTCCTTGCACAGCAAATGAAGAATCTGGAAGT
GTTCATGCATGTCTCAACAGCATACGCCTACTGCAATCGAAAGCATATTGACGAAGTAGTTTAT
CCACCCCCTGTAGATCCCAAGAAGCTGATTGATTCCTTAGAATGGATGGATGATGGCCTAGTAA
ATGATATTACACCAAAATTGATAGGCGACAGACCTAATACATACATATACACCAAGGCGTTGGC
AGAATATGTTGTGCAGCAAGAAGGAGCAAAGCTAAATGTTGCAATTGTAAGGCCGTCGATTGTT
GGTGCCAGTTGGAAAGAACCTTTTCCAGGATGGATTGATAACTTTAATGGACCAAGTGGTCTCT
TCATTGCGGCAGGGAAAGGAATTCTTCGAACAATGCGTGCCTCCAACAATGCCCTTGCAGATCT
CGTTCCTGTAGATGTAGTTGTCAACACGAGCCTTGCTGCAGCCTGGTATTCCGGAGTTAATAGA
CCAAGAAACATCATGGTGTATAATTGCACAACAGGCAGCACTAATCCTTTCCACTGGGGGGAAG
TTGAATACCATGTAATTTCCACTTTCAAGAGGAATCCTCTCGAACAGGCCTTCAGACGGCCCAA
TGTAAATCTAACCTCCAATCACCTTTTATATCATTACTGGATTGCTGTTAGCCATAAGGCCCCA
GCATTCCTGTATGATATCTACCTCAGGATGACTGGAAGAAGCCCAAGGATGATGAAAACAATCA
CTCGTCTTCACAAAGCCATGGTATTCCTTGAATATTTTACAAGTAACTCTTGGGTTTGGAATAC
TGATAATGTCAATATGTTAATGAACCAGCTAAACCCTGAAGATAAAAAGACCTTTAATATTGAT
GTACGACAGTTACATTGGGCAGAATATATAGAGAACTACTGCATGGGGACTAAAAAATATGTAT
TGAATGAAGAGATGTCGGGCCTCCCTGCAGCTAGAAAGCATCTGAACAAGTTGCGGAATATCCG
TTATGGTTTCAATACAATCCTTGTGATACTTATCTGGCGCATTTTTATTGCAAGATCACAAATG
GCAAGAAACATCTGGTACTTTGTGGTTAGTCTGTGTTACAAATTTCTGTCATACTTCCGAGCAT
CCAGCACTATGAGATACTGAAGACCAAGAATTTAGCATTAGAACATCTATGCATATGATGATCT
AAATGCATAAAATGTAAAATGTACTTAAGTCATCTCACCTTTCGTTAAGACATTAAACCATCTT
AAATTGGA

hide sequence

RefSeq Acc Id:

XM_006230020 ⟹ XP_006230082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	177,079,141 - 177,140,363 (+)	NCBI
mRatBN7.2	1	167,644,622 - 167,705,868 (+)	NCBI
Rnor_6.0	1	178,351,674 - 178,409,668 (+)	NCBI
Rnor_5.0	1	185,319,679 - 185,380,870 (+)	NCBI

Sequence:

show sequence

AGCAGCCGGTCGGGGGCGGTGAAAAGCGAGTGAGGAGAGCGCGACGGCGGCGTAGCCATCGCTG
AGAGGAGAGCGAGGCCCGAGCTTCCGCATCGAGATTTGGTGACTGAGGAAGGGACCCAGAGACT
CCTTGAACAACTAAGTCACAATGGTCTCAATCCCAGAATACTATGAAGGCAAAAACATCCTCCT
CACAGGAGCCACTGGTTTCTTAGGGAAGGTGCTTCTGGAAAAGTTGCTGAGATCTTGTCCTAAG
GTGAATTCAGTCTATGTTTTGGTGAGGCAAAAAGCTGGACAGACACCCCAAGAGCGAGTGGAAG
AAATCCTCAGTGGCAAGCTTTTTGACAGGTTGAGAGATGAAAATCCAGATTTTAGACAGAAAAT
TATAGCAATCAACAGTGAACTCACCCAACCTAAACTGGCTCTCAGTGAAGAAGATAAGGAGATC
ATTATAGATTCTACCAATGTCATATTTCACTGTGCAGCTACTGTAAGATTTAATGAAAATTTAA
GAGATGCTGTTCAGTTAAATGTGATTGCTACACGACAGCTCATTCTCCTTGCACAGCAAATGAA
GAATCTGGAAGTGTTCATGCATGTCTCAACAGCATACGCCTACTGCAATCGAAAGCATATTGAC
GAAGTAGTTTATCCACCCCCTGTAGATCCCAAGAAGCTGATTGATTCCTTAGAATGGATGGATG
ATGGCCTAGTAAATGATATTACACCAAAATTGATAGGCGACAGACCTAATACATACATATACAC
CAAGGCGTTGGCAGAATATGTTGTGCAGCAAGAAGGAGCAAAGCTAAATGTTGCAATTGTAAGG
CCGTCGATTGTTGGTGCCAGTTGGAAAGAACCTTTTCCAGGATGGATTGATAACTTTAATGGAC
CAAGTGGTCTCTTCATTGCGGCAGGGAAAGGAATTCTTCGAACAATGCGTGCCTCCAACAATGC
CCTTGCAGATCTCGTTCCTGTAGATGTAGTTGTCAACACGAGCCTTGCTGCAGCCTGGTATTCC
GGAGTTAATAGACCAAGAAACATCATGGTGTATAATTGCACAACAGGCAGCACTAATCCTTTCC
ACTGGGGGGAAGTTGGAGATTATCTAAATCATTCCTTCAAGACGAATCCTTTAAACCAAGTATT
CAGGCACCCCTATGTTAAGTTCTATTCCAACAACCTAATGCTTCATTATTGGAAGGGTGTCAAA
CATACAGTACCTGCATTATTGCTCGATCTTGCACTCAGGTTGACAGGTCAGAAACCGTGGATGA
TGAAAACAATCACTCGTCTTCACAAAGCCATGGTATTCCTTGAATATTTTACAAGTAACTCTTG
GGTTTGGAATACTGATAATGTCAATATGTTAATGAACCAGCTAAACCCTGAAGATAAAAAGACC
TTTAATATTGATGTACGACAGTTACATTGGGCAGAATATATAGAGAACTACTGCATGGGGACTA
AAAAATATGTATTGAATGAAGAGATGTCGGGCCTCCCTGCAGCTAGAAAGCATCTGAACAAGTT
GCGGAATATCCGTTATGGTTTCAATACAATCCTTGTGATACTTATCTGGCGCATTTTTATTGCA
AGATCACAAATGGCAAGAAACATCTGGTACTTTGTGGTTAGTCTGTGTTACAAATTTCTGTCAT
ACTTCCGAGCATCCAGCACTATGAGATACTGAAGACCAAGAATTTAGCATTAGAACATCTATGC
ATATGATGATCTAAATGCATAAAATGTAAAATGTACTTAAGTCATCTCACCTTTCGTTAAGACA
TTAAACCATCTTAAATTGGA

hide sequence

RefSeq Acc Id:

XM_039106452 ⟹ XP_038962380

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	177,079,025 - 177,140,363 (+)	NCBI
mRatBN7.2	1	167,644,636 - 167,704,621 (+)	NCBI

RefSeq Acc Id:

XM_039106453 ⟹ XP_038962381

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	177,079,144 - 177,121,013 (+)	NCBI
mRatBN7.2	1	167,644,622 - 167,686,775 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011933	(Get FASTA)	NCBI Sequence Viewer
	NP_001426663	(Get FASTA)	NCBI Sequence Viewer
	NP_001426664	(Get FASTA)	NCBI Sequence Viewer
	NP_001426665	(Get FASTA)	NCBI Sequence Viewer
	NP_001426666	(Get FASTA)	NCBI Sequence Viewer
	XP_006230079	(Get FASTA)	NCBI Sequence Viewer
	XP_006230080	(Get FASTA)	NCBI Sequence Viewer
	XP_006230082	(Get FASTA)	NCBI Sequence Viewer
	XP_038962380	(Get FASTA)	NCBI Sequence Viewer
	XP_038962381	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82015	(Get FASTA)	NCBI Sequence Viewer
	EDM17791	(Get FASTA)	NCBI Sequence Viewer
	EDM17792	(Get FASTA)	NCBI Sequence Viewer
	EDM17793	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018532
	ENSRNOP00000068069.1
	ENSRNOP00000068284
GenBank Protein	Q66H50	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011933 ⟸ NM_001011933

- UniProtKB:

Q66H50 (UniProtKB/Swiss-Prot), A6I889 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKL
FDRLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLN
VIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDI
TPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIA
AGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVGD
YLNHSFKTNPLNQVFRHPYVKFYSNNLMLHYWKGVKHTVPALLLDLALRLTGQKPWMMKTITRL
HKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNE
EMSGLPAARKHLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVVSLCYKFLSYFRASST
MRY

hide sequence

RefSeq Acc Id:

XP_006230082 ⟸ XM_006230020

- Peptide Label:

isoform X2

- Sequence:

show sequence

MVSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKL
FDRLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLN
VIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDI
TPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIA
AGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVGD
YLNHSFKTNPLNQVFRHPYVKFYSNNLMLHYWKGVKHTVPALLLDLALRLTGQKPWMMKTITRL
HKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNE
EMSGLPAARKHLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVVSLCYKFLSYFRASST
MRY

hide sequence

RefSeq Acc Id:

XP_006230079 ⟸ XM_006230017

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKL
FDRLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLN
VIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDI
TPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIA
AGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEY
HVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRL
HKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNE
EMSGLPAARKHLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVVSLCYKFLSYFRASST
MRY

hide sequence

RefSeq Acc Id:

XP_006230080 ⟸ XM_006230018

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVSIPEYYEGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKL
FDRLRDENPDFRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQLN
VIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDDGLVNDI
TPKLIGDRPNTYIYTKALAEYVVQQEGAKLNVAIVRPSIVGASWKEPFPGWIDNFNGPSGLFIA
AGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIMVYNCTTGSTNPFHWGEVEY
HVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTITRL
HKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNIDVRQLHWAEYIENYCMGTKKYVLNE
EMSGLPAARKHLNKLRNIRYGFNTILVILIWRIFIARSQMARNIWYFVVSLCYKFLSYFRASST
MRY

hide sequence

Ensembl Acc Id:

ENSRNOP00000018532 ⟸ ENSRNOT00000018532

Ensembl Acc Id:

ENSRNOP00000068155 ⟸ ENSRNOT00000076925

Ensembl Acc Id:

ENSRNOP00000068069 ⟸ ENSRNOT00000076756

Ensembl Acc Id:

ENSRNOP00000068284 ⟸ ENSRNOT00000076430

RefSeq Acc Id:	XP_038962381 ⟸ XM_039106453
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038962380 ⟸ XM_039106452
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000108415 ⟸ ENSRNOT00000128412

Protein Domains

Fatty acyl-CoA reductase C-terminal Thioester reductase (TE)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H50-F1-model_v2	AlphaFold	Q66H50	1-515	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690330

Promoter ID:

EPDNEW_R850

Type:

initiation region

Name:

Far1_1

Description:

fatty acyl CoA reductase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	178,351,701 - 178,351,761	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306647	AgrOrtholog
BioCyc Gene	G2FUF-57762	BioCyc
Ensembl Genes	ENSRNOG00000013176	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000018532	ENTREZGENE
	ENSRNOT00000076430	ENTREZGENE
	ENSRNOT00000076756.2	UniProtKB/Swiss-Prot
Gene3D-CATH	NAD(P)-binding Rossmann-like Domain	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7132096	IMAGE-MGC_LOAD
InterPro	FAR	UniProtKB/Swiss-Prot
	FAR_C	UniProtKB/Swiss-Prot
	Male_sterile_NAD-bd	UniProtKB/Swiss-Prot
	NAD(P)-bd_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:293173	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94292	IMAGE-MGC_LOAD
NCBI Gene	293173	ENTREZGENE
PANTHER	FATTY ACYL-COA REDUCTASE 1	UniProtKB/Swiss-Prot
	PTHR11011	UniProtKB/Swiss-Prot
Pfam	NAD_binding_4	UniProtKB/Swiss-Prot
	Sterile	UniProtKB/Swiss-Prot
PhenoGen	Far1	PhenoGen
RatGTEx	ENSRNOG00000013176	RatGTEx
Superfamily-SCOP	SSF51735	UniProtKB/Swiss-Prot
UniProt	A0A096MJW2	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0M1Q5_RAT	UniProtKB/TrEMBL
	A6I887	ENTREZGENE, UniProtKB/TrEMBL
	A6I889	ENTREZGENE, UniProtKB/TrEMBL
	FACR1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-23	Far1	fatty acyl CoA reductase 1	Mlstd2	male sterility domain containing 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Mlstd2	male sterility domain containing 2	Mlstd2_predicted	male sterility domain containing 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Mlstd2_predicted	male sterility domain containing 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM