Zbtb2 (zinc finger and BTB domain containing 2) - Rat Genome Database

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Gene: Zbtb2 (zinc finger and BTB domain containing 2) Rattus norvegicus
Analyze
Symbol: Zbtb2
Name: zinc finger and BTB domain containing 2
RGD ID: 1306621
Description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; regulation of cytokine production; and regulation of immune system process. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZBTB2 (zinc finger and BTB domain containing 2); INTERACTS WITH acrylamide; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC308126; zinc finger and BTB domain-containing protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8143,232,839 - 43,252,115 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl143,232,839 - 43,252,614 (-)EnsemblGRCr8
mRatBN7.2140,827,457 - 40,846,733 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl140,827,457 - 40,846,594 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx141,354,622 - 41,362,102 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0147,341,816 - 47,349,300 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,430,224 - 41,437,705 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0140,914,175 - 40,933,586 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl140,914,171 - 40,921,508 (-)Ensemblrn6Rnor6.0
Rnor_5.0142,260,208 - 42,267,107 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4135,076,357 - 35,083,932 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera136,518,203 - 36,525,855 (-)NCBICelera
RGSC_v3.1135,080,787 - 35,086,872 (-)NCBI
Cytogenetic Map1q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IBA)
nucleus  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19380588   PMID:25609694  


Genomics

Comparative Map Data
Zbtb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8143,232,839 - 43,252,115 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl143,232,839 - 43,252,614 (-)EnsemblGRCr8
mRatBN7.2140,827,457 - 40,846,733 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl140,827,457 - 40,846,594 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx141,354,622 - 41,362,102 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0147,341,816 - 47,349,300 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0141,430,224 - 41,437,705 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0140,914,175 - 40,933,586 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl140,914,171 - 40,921,508 (-)Ensemblrn6Rnor6.0
Rnor_5.0142,260,208 - 42,267,107 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4135,076,357 - 35,083,932 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera136,518,203 - 36,525,855 (-)NCBICelera
RGSC_v3.1135,080,787 - 35,086,872 (-)NCBI
Cytogenetic Map1q11NCBI
ZBTB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386151,364,115 - 151,391,559 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6151,364,105 - 151,391,696 (-)Ensemblhg38GRCh38
GRCh376151,685,250 - 151,712,694 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366151,726,943 - 151,754,370 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346151,777,364 - 151,804,791NCBI
Celera6152,419,132 - 152,446,560 (-)NCBICelera
Cytogenetic Map6q25.1NCBI
HuRef6149,247,516 - 149,274,962 (-)NCBIHuRef
CHM1_16151,949,401 - 151,976,826 (-)NCBICHM1_1
T2T-CHM13v2.06152,564,691 - 152,592,145 (-)NCBIT2T-CHM13v2.0
Zbtb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39104,317,074 - 4,353,114 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl104,317,075 - 4,338,108 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38104,367,074 - 4,388,108 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl104,367,075 - 4,388,108 (-)Ensemblmm10GRCm38
MGSCv37105,958,433 - 5,979,467 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36105,958,433 - 5,979,455 (+)NCBIMGSCv36mm8
Celera104,296,482 - 4,304,164 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map102.06NCBI
Zbtb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543910,220,204 - 10,233,207 (+)Ensembl
ChiLan1.0NW_00495543910,220,204 - 10,231,065 (+)NCBIChiLan1.0ChiLan1.0
ZBTB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25171,388,789 - 171,416,197 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16169,280,729 - 169,321,165 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06149,182,302 - 149,210,147 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16153,879,460 - 153,906,608 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6153,879,460 - 153,906,608 (-)EnsemblpanPan2panpan1.1
ZBTB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1141,719,251 - 41,743,007 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl141,719,239 - 41,743,392 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha142,560,516 - 42,584,186 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0141,904,237 - 41,927,916 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl141,904,583 - 41,928,302 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1141,777,723 - 41,801,393 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0141,621,525 - 41,645,329 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0142,128,190 - 42,151,831 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zbtb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946137,013,913 - 137,032,836 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364894,264,736 - 4,274,127 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364894,265,913 - 4,274,099 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl114,866,252 - 14,894,948 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1114,858,933 - 14,895,744 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,295,261 - 17,305,754 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11378,822,647 - 78,852,343 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1378,822,619 - 78,851,708 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604051,153,995 - 51,183,683 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247856,883,436 - 6,894,339 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247856,869,923 - 6,892,263 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zbtb2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12199,142,167 - 199,161,169 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Zbtb2
69 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:474
Count of miRNA genes:246
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000026433
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000026433   ⟹   ENSRNOP00000026433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,232,839 - 43,252,041 (-)Ensembl
mRatBN7.2 Ensembl140,827,457 - 40,846,594 (-)Ensembl
Rnor_6.0 Ensembl140,914,171 - 40,921,508 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121366   ⟹   ENSRNOP00000103588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,233,345 - 43,252,614 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000158545   ⟹   ENSRNOP00000108668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl143,233,345 - 43,252,614 (-)Ensembl
RefSeq Acc Id: NM_001107460   ⟹   NP_001100930
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,232,839 - 43,240,320 (-)NCBI
mRatBN7.2140,827,457 - 40,834,938 (-)NCBI
Rnor_6.0140,914,175 - 40,921,442 (-)NCBI
Rnor_5.0142,260,208 - 42,267,107 (-)NCBI
RGSC_v3.4135,076,357 - 35,083,932 (-)RGD
Celera136,518,203 - 36,525,855 (-)RGD
Sequence:
RefSeq Acc Id: XM_039110625   ⟹   XP_038966553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,232,839 - 43,252,115 (-)NCBI
mRatBN7.2140,827,457 - 40,846,733 (-)NCBI
RefSeq Acc Id: XM_039110632   ⟹   XP_038966560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8143,232,839 - 43,251,608 (-)NCBI
mRatBN7.2140,827,457 - 40,846,228 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100930 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966553 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966560 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92868 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000026433.5
  ENSRNOP00000103588.1
  ENSRNOP00000108668.1
RefSeq Acc Id: NP_001100930   ⟸   NM_001107460
- UniProtKB: D4ABS0 (UniProtKB/TrEMBL),   A6KIL1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000026433   ⟸   ENSRNOT00000026433
RefSeq Acc Id: XP_038966553   ⟸   XM_039110625
- Peptide Label: isoform X1
- UniProtKB: A6KIL1 (UniProtKB/TrEMBL),   D4ABS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966560   ⟸   XM_039110632
- Peptide Label: isoform X1
- UniProtKB: A6KIL1 (UniProtKB/TrEMBL),   D4ABS0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108668   ⟸   ENSRNOT00000158545
Ensembl Acc Id: ENSRNOP00000103588   ⟸   ENSRNOT00000121366
Protein Domains
BTB   C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABS0-F1-model_v2 AlphaFold D4ABS0 1-514 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306621 AgrOrtholog
BioCyc Gene G2FUF-61719 BioCyc
Ensembl Genes ENSRNOG00000019544 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000026433.9 UniProtKB/TrEMBL
  ENSRNOT00000121366.1 UniProtKB/TrEMBL
  ENSRNOT00000158545.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
  Potassium Channel Kv1.1, Chain A UniProtKB/TrEMBL
InterPro BTB/POZ-like UniProtKB/TrEMBL
  BTB/POZ_fold UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report rno:308126 UniProtKB/TrEMBL
NCBI Gene 308126 ENTREZGENE
PANTHER ZINC FINGER AND BTB DOMAIN CONTAINING 2 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zbtb2 PhenoGen
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019544 RatGTEx
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP BTB/POZ_fold UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0ABK0LDQ1_RAT UniProtKB/TrEMBL
  A0ABK0LYD6_RAT UniProtKB/TrEMBL
  A6KIL1 ENTREZGENE, UniProtKB/TrEMBL
  D4ABS0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Zbtb2  zinc finger and BTB domain containing 2   Zbtb2_predicted  zinc finger and BTB domain containing 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Zbtb2_predicted  zinc finger and BTB domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED