Trip12 (thyroid hormone receptor interactor 12) - Rat Genome Database

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Gene: Trip12 (thyroid hormone receptor interactor 12) Rattus norvegicus
Analyze
Symbol: Trip12
Name: thyroid hormone receptor interactor 12
RGD ID: 1306607
Description: Predicted to enable nuclear thyroid hormone receptor binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including chromatin remodeling; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein polyubiquitination. Predicted to be located in nucleoplasm. Predicted to be active in nuclear speck. Human ortholog(s) of this gene implicated in Clark-Baraitser syndrome. Orthologous to human TRIP12 (thyroid hormone receptor interactor 12); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: E3 ubiquitin-protein ligase TRIP12; gene trap locus 6; Gtl6; HECT-type E3 ubiquitin transferase TRIP12; LOC316575; MGC124674; MGC125132; probable E3 ubiquitin-protein ligase TRIP12; thyroid receptor-interacting protein 12; TR-interacting protein 12; TRIP-12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8993,364,791 - 93,491,015 (-)NCBIGRCr8
mRatBN7.2985,916,691 - 86,043,312 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl985,916,691 - 86,051,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx994,332,006 - 94,458,253 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0999,460,491 - 99,586,734 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0997,845,040 - 97,971,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0992,305,059 - 92,435,388 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl992,305,051 - 92,435,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,038,603 - 92,167,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4983,961,411 - 84,085,077 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1984,145,673 - 84,268,469 (-)NCBI
Celera983,343,045 - 83,465,833 (-)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
butane-2,3-dione  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
clofibrate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dichloromethane  (EXP)
dioxygen  (ISO)
ethanol  (ISO)
ethylbenzene  (EXP)
fenofibrate  (ISO)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
methapyrilene  (ISO)
methylparaben  (ISO)
N(4)-hydroxycytidine  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
thapsigargin  (ISO)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear speck  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Push back to respond better: regulatory inhibition of the DNA double-strand break response. Panier S and Durocher D, Nat Rev Mol Cell Biol. 2013 Oct;14(10):661-72. doi: 10.1038/nrm3659. Epub 2013 Sep 4.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7776974   PMID:12477932   PMID:18627766   PMID:19028597   PMID:19028681   PMID:20208519   PMID:21630459   PMID:22028794   PMID:22884692   PMID:26514267   PMID:30982744   PMID:31505169  


Genomics

Comparative Map Data
Trip12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8993,364,791 - 93,491,015 (-)NCBIGRCr8
mRatBN7.2985,916,691 - 86,043,312 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl985,916,691 - 86,051,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx994,332,006 - 94,458,253 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0999,460,491 - 99,586,734 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0997,845,040 - 97,971,036 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0992,305,059 - 92,435,388 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl992,305,051 - 92,435,365 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,038,603 - 92,167,963 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4983,961,411 - 84,085,077 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1984,145,673 - 84,268,469 (-)NCBI
Celera983,343,045 - 83,465,833 (-)NCBICelera
Cytogenetic Map9q35NCBI
TRIP12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,763,837 - 229,923,186 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,763,837 - 229,923,239 (-)EnsemblGRCh38hg38GRCh38
GRCh372230,628,553 - 230,787,902 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362230,340,174 - 230,494,899 (-)NCBINCBI36Build 36hg18NCBI36
Build 342230,457,434 - 230,612,160NCBI
Celera2224,407,870 - 224,562,590 (-)NCBICelera
Cytogenetic Map2q36.3NCBI
HuRef2222,471,564 - 222,626,401 (-)NCBIHuRef
CHM1_12230,638,212 - 230,792,918 (-)NCBICHM1_1
T2T-CHM13v2.02230,246,527 - 230,405,874 (-)NCBIT2T-CHM13v2.0
Trip12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39184,698,910 - 84,818,285 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl184,698,910 - 84,818,237 (-)EnsemblGRCm39 Ensembl
GRCm38184,721,189 - 84,850,004 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl184,721,189 - 84,840,516 (-)EnsemblGRCm38mm10GRCm38
MGSCv37184,717,764 - 84,835,879 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36184,600,221 - 84,718,314 (-)NCBIMGSCv36mm8
Celera184,781,289 - 84,899,379 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.42NCBI
Trip12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554535,134,016 - 5,271,399 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554535,132,776 - 5,272,250 (+)NCBIChiLan1.0ChiLan1.0
TRIP12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213132,388,081 - 132,549,537 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B132,403,048 - 132,564,469 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B117,013,343 - 117,175,296 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B235,817,633 - 235,979,780 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B235,820,182 - 235,979,780 (-)Ensemblpanpan1.1panPan2
TRIP12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12542,060,103 - 42,208,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2542,060,991 - 42,208,054 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2542,683,739 - 42,830,753 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02542,314,008 - 42,461,218 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2542,314,893 - 42,461,211 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12542,245,230 - 42,392,136 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02542,085,737 - 42,233,226 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02542,259,135 - 42,406,205 (-)NCBIUU_Cfam_GSD_1.0
Trip12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303184,249,264 - 184,400,199 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365256,539,191 - 6,690,457 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365256,539,234 - 6,690,457 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15130,787,864 - 130,939,783 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115130,784,567 - 130,940,497 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap15q21-q26NCBI
TRIP12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110115,789,978 - 115,946,978 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10115,789,605 - 115,945,753 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604083,509,692 - 83,667,771 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trip12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248433,586,734 - 3,722,237 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248433,589,068 - 3,723,115 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trip12
372 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:102
Interacting mature miRNAs:109
Transcripts:ENSRNOT00000022822
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat

Markers in Region
RH139773  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2985,919,026 - 85,919,246 (+)MAPPERmRatBN7.2
Rnor_6.0992,307,387 - 92,307,606NCBIRnor6.0
Rnor_5.0992,039,910 - 92,040,129UniSTSRnor5.0
RGSC_v3.4983,961,519 - 83,961,738UniSTSRGSC3.4
Celera983,343,153 - 83,343,372UniSTS
Cytogenetic Map9q35UniSTS
RH125936  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2985,919,838 - 85,920,047 (+)MAPPERmRatBN7.2
Rnor_6.0992,308,199 - 92,308,407NCBIRnor6.0
Rnor_5.0992,040,722 - 92,040,930UniSTSRnor5.0
RGSC_v3.4983,962,331 - 83,962,539UniSTSRGSC3.4
Celera983,343,965 - 83,344,173UniSTS
Cytogenetic Map9q35UniSTS
TRIP12_3930  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2985,919,732 - 85,920,227 (+)MAPPERmRatBN7.2
Rnor_6.0992,308,093 - 92,308,587NCBIRnor6.0
Rnor_5.0992,040,616 - 92,041,110UniSTSRnor5.0
RGSC_v3.4983,962,225 - 83,962,719UniSTSRGSC3.4
Celera983,343,859 - 83,344,353UniSTS
Cytogenetic Map9q35UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001031659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC088304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC105889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022822   ⟹   ENSRNOP00000022822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl985,916,691 - 86,042,043 (-)Ensembl
Rnor_6.0 Ensembl992,307,280 - 92,435,363 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079452   ⟹   ENSRNOP00000068991
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl985,916,691 - 86,051,403 (-)Ensembl
Rnor_6.0 Ensembl992,307,591 - 92,405,117 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl992,322,345 - 92,328,605 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093245   ⟹   ENSRNOP00000076130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl985,916,691 - 86,042,043 (-)Ensembl
Rnor_6.0 Ensembl992,308,121 - 92,435,365 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093735   ⟹   ENSRNOP00000076156
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl985,916,691 - 86,042,043 (-)Ensembl
Rnor_6.0 Ensembl992,305,051 - 92,435,363 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107698   ⟹   ENSRNOP00000092462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl985,916,691 - 86,051,403 (-)Ensembl
RefSeq Acc Id: NM_001031659   ⟹   NP_001026829
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,364,791 - 93,490,139 (-)NCBI
mRatBN7.2985,916,691 - 86,042,043 (-)NCBI
Rnor_6.0992,307,279 - 92,435,363 (-)NCBI
Rnor_5.0992,038,603 - 92,167,963 (-)NCBI
RGSC_v3.4983,961,411 - 84,085,077 (-)RGD
Celera983,343,045 - 83,465,833 (-)RGD
Sequence:
RefSeq Acc Id: XM_006245379   ⟹   XP_006245441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
Rnor_6.0992,308,121 - 92,435,345 (-)NCBI
Rnor_5.0992,038,603 - 92,167,963 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245380   ⟹   XP_006245442
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
Rnor_6.0992,308,121 - 92,435,345 (-)NCBI
Rnor_5.0992,038,603 - 92,167,963 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767252   ⟹   XP_008765474
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
Rnor_6.0992,305,059 - 92,435,346 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596487   ⟹   XP_017451976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
Rnor_6.0992,308,121 - 92,435,345 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596488   ⟹   XP_017451977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,916,698 - 86,042,216 (-)NCBI
Rnor_6.0992,305,059 - 92,435,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083703   ⟹   XP_038939631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
RefSeq Acc Id: XM_039083709   ⟹   XP_038939637
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
RefSeq Acc Id: XM_039083711   ⟹   XP_038939639
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
RefSeq Acc Id: XM_039083712   ⟹   XP_038939640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
mRatBN7.2985,919,761 - 86,042,216 (-)NCBI
RefSeq Acc Id: XM_063267238   ⟹   XP_063123308
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,563 (-)NCBI
RefSeq Acc Id: XM_063267239   ⟹   XP_063123309
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,361 (-)NCBI
RefSeq Acc Id: XM_063267240   ⟹   XP_063123310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,491,011 (-)NCBI
RefSeq Acc Id: XM_063267241   ⟹   XP_063123311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,834 (-)NCBI
RefSeq Acc Id: XM_063267243   ⟹   XP_063123313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267244   ⟹   XP_063123314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,563 (-)NCBI
RefSeq Acc Id: XM_063267245   ⟹   XP_063123315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,361 (-)NCBI
RefSeq Acc Id: XM_063267246   ⟹   XP_063123316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,791 (-)NCBI
RefSeq Acc Id: XM_063267247   ⟹   XP_063123317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,491,011 (-)NCBI
RefSeq Acc Id: XM_063267248   ⟹   XP_063123318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,563 (-)NCBI
RefSeq Acc Id: XM_063267249   ⟹   XP_063123319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,791 (-)NCBI
RefSeq Acc Id: XM_063267250   ⟹   XP_063123320
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,491,015 (-)NCBI
RefSeq Acc Id: XM_063267251   ⟹   XP_063123321
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267253   ⟹   XP_063123323
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267254   ⟹   XP_063123324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,795 (-)NCBI
RefSeq Acc Id: XM_063267255   ⟹   XP_063123325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,563 (-)NCBI
RefSeq Acc Id: XM_063267256   ⟹   XP_063123326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267257   ⟹   XP_063123327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267258   ⟹   XP_063123328
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267259   ⟹   XP_063123329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267261   ⟹   XP_063123331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267262   ⟹   XP_063123332
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267263   ⟹   XP_063123333
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,578 (-)NCBI
RefSeq Acc Id: XM_063267264   ⟹   XP_063123334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,797 (-)NCBI
RefSeq Acc Id: XM_063267265   ⟹   XP_063123335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,578 (-)NCBI
RefSeq Acc Id: XM_063267266   ⟹   XP_063123336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267267   ⟹   XP_063123337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,972 (-)NCBI
RefSeq Acc Id: XM_063267268   ⟹   XP_063123338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,834 (-)NCBI
RefSeq Acc Id: XM_063267269   ⟹   XP_063123339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267270   ⟹   XP_063123340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,578 (-)NCBI
RefSeq Acc Id: XM_063267271   ⟹   XP_063123341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,578 (-)NCBI
RefSeq Acc Id: XM_063267272   ⟹   XP_063123342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,797 (-)NCBI
RefSeq Acc Id: XM_063267273   ⟹   XP_063123343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267274   ⟹   XP_063123344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267275   ⟹   XP_063123345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,579 (-)NCBI
RefSeq Acc Id: XM_063267276   ⟹   XP_063123346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267277   ⟹   XP_063123347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,489,578 (-)NCBI
RefSeq Acc Id: XM_063267278   ⟹   XP_063123348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
RefSeq Acc Id: XM_063267279   ⟹   XP_063123349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,983 (-)NCBI
RefSeq Acc Id: XM_063267280   ⟹   XP_063123350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8993,366,322 - 93,490,150 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001026829 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245441 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245442 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765474 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451976 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451977 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939631 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939637 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939639 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939640 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123308 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123309 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123310 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123311 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123313 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123314 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123315 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123316 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123317 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123318 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123319 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123320 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123321 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123323 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123324 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123325 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123326 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123327 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123328 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123329 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123331 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123332 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123333 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123334 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123335 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123336 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123337 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123338 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123339 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123340 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123341 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123342 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123343 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123344 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123345 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123346 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123347 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123348 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123349 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123350 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88304 (Get FASTA)   NCBI Sequence Viewer  
  AAI00625 (Get FASTA)   NCBI Sequence Viewer  
  AAI05890 (Get FASTA)   NCBI Sequence Viewer  
  EDL75537 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022822.4
  ENSRNOP00000068991.2
  ENSRNOP00000076130.2
  ENSRNOP00000076156.2
  ENSRNOP00000092462.1
GenBank Protein F1LP64 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001026829   ⟸   NM_001031659
- UniProtKB: Q497C1 (UniProtKB/Swiss-Prot),   F1LP79 (UniProtKB/Swiss-Prot),   Q5I0I0 (UniProtKB/Swiss-Prot),   F1LP64 (UniProtKB/Swiss-Prot),   A6JWC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245442   ⟸   XM_006245380
- Peptide Label: isoform X6
- UniProtKB: A0A0G2JU73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245441   ⟸   XM_006245379
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHN4 (UniProtKB/TrEMBL),   A0A0G2JU73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765474   ⟸   XM_008767252
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JU73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451977   ⟸   XM_017596488
- Peptide Label: isoform X24
- UniProtKB: A6JWC9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017451976   ⟸   XM_017596487
- Peptide Label: isoform X10
- UniProtKB: A0A0G2JU73 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068991   ⟸   ENSRNOT00000079452
Ensembl Acc Id: ENSRNOP00000076156   ⟸   ENSRNOT00000093735
Ensembl Acc Id: ENSRNOP00000022822   ⟸   ENSRNOT00000022822
Ensembl Acc Id: ENSRNOP00000076130   ⟸   ENSRNOT00000093245
RefSeq Acc Id: XP_038939640   ⟸   XM_039083712
- Peptide Label: isoform X26
- UniProtKB: A6JWC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939639   ⟸   XM_039083711
- Peptide Label: isoform X20
- UniProtKB: A6JWC9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939637   ⟸   XM_039083709
- Peptide Label: isoform X14
- UniProtKB: A0A0G2JU73 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939631   ⟸   XM_039083703
- Peptide Label: isoform X7
- UniProtKB: A0A0G2JU73 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000092462   ⟸   ENSRNOT00000107698
RefSeq Acc Id: XP_063123320   ⟸   XM_063267250
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123317   ⟸   XM_063267247
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123310   ⟸   XM_063267240
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123349   ⟸   XM_063267279
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063123337   ⟸   XM_063267267
- Peptide Label: isoform X16
- UniProtKB: A0A8L2RBG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123350   ⟸   XM_063267280
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063123348   ⟸   XM_063267278
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063123346   ⟸   XM_063267276
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063123344   ⟸   XM_063267274
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063123336   ⟸   XM_063267266
- Peptide Label: isoform X16
- UniProtKB: A0A8L2RBG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123343   ⟸   XM_063267273
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063123339   ⟸   XM_063267269
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063123332   ⟸   XM_063267262
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063123328   ⟸   XM_063267258
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063123327   ⟸   XM_063267257
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063123331   ⟸   XM_063267261
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063123329   ⟸   XM_063267259
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063123326   ⟸   XM_063267256
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063123323   ⟸   XM_063267253
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063123313   ⟸   XM_063267243
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123321   ⟸   XM_063267251
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063123338   ⟸   XM_063267268
- Peptide Label: isoform X16
- UniProtKB: A0A8L2RBG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123311   ⟸   XM_063267241
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123342   ⟸   XM_063267272
- Peptide Label: isoform X18
- UniProtKB: Q5I0I0 (UniProtKB/Swiss-Prot),   Q497C1 (UniProtKB/Swiss-Prot),   F1LP79 (UniProtKB/Swiss-Prot),   F1LP64 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063123334   ⟸   XM_063267264
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063123324   ⟸   XM_063267254
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063123319   ⟸   XM_063267249
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123316   ⟸   XM_063267246
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123345   ⟸   XM_063267275
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063123347   ⟸   XM_063267277
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063123341   ⟸   XM_063267271
- Peptide Label: isoform X18
- UniProtKB: Q5I0I0 (UniProtKB/Swiss-Prot),   Q497C1 (UniProtKB/Swiss-Prot),   F1LP79 (UniProtKB/Swiss-Prot),   F1LP64 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063123335   ⟸   XM_063267265
- Peptide Label: isoform X16
- UniProtKB: A0A8L2RBG4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123340   ⟸   XM_063267270
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063123333   ⟸   XM_063267263
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063123325   ⟸   XM_063267255
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063123318   ⟸   XM_063267248
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123314   ⟸   XM_063267244
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123308   ⟸   XM_063267238
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063123315   ⟸   XM_063267245
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063123309   ⟸   XM_063267239
- Peptide Label: isoform X1
Protein Domains
HECT   WWE

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LP64-F1-model_v2 AlphaFold F1LP64 1-2025 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696818
Promoter ID:EPDNEW_R7335
Type:multiple initiation site
Name:Trip12_1
Description:thyroid hormone receptor interactor 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0992,435,380 - 92,435,440EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306607 AgrOrtholog
BioCyc Gene G2FUF-26953 BioCyc
Ensembl Genes ENSRNOG00000016963 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022822.5 UniProtKB/TrEMBL
  ENSRNOT00000079452.2 UniProtKB/TrEMBL
  ENSRNOT00000093245.2 UniProtKB/TrEMBL
  ENSRNOT00000093735.2 UniProtKB/TrEMBL
  ENSRNOT00000107698.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.720.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domain UniProtKB/TrEMBL
  Hect, E3 ligase catalytic domains UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7323776 IMAGE-MGC_LOAD
  IMAGE:7930421 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HECT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Hect_E3_ubiquitin_ligase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HECTD1/TRIP12-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WWE-dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WWE-dom_subgr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WWE_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:316575 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109511 IMAGE-MGC_LOAD
  MGC:124674 IMAGE-MGC_LOAD
NCBI Gene 316575 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45670 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WWE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trip12 PhenoGen
PROSITE HECT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WWE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016963 RatGTEx
SMART HECTc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WWE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF117839 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF56204 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MXY4_RAT UniProtKB/TrEMBL
  A0A0G2JU73 ENTREZGENE, UniProtKB/TrEMBL
  A0A1W2Q676_RAT UniProtKB/TrEMBL
  A0A8I6AHN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RBG4 ENTREZGENE, UniProtKB/TrEMBL
  A6JWC9 ENTREZGENE, UniProtKB/TrEMBL
  F1LP64 ENTREZGENE
  F1LP79 ENTREZGENE
  Q3KR60_RAT UniProtKB/TrEMBL
  Q497C1 ENTREZGENE
  Q5I0I0 ENTREZGENE
  TRIPC_RAT UniProtKB/Swiss-Prot
UniProt Secondary F1LP79 UniProtKB/Swiss-Prot
  Q497C1 UniProtKB/Swiss-Prot
  Q5I0I0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Trip12  thyroid hormone receptor interactor 12  Gtl6  gene trap locus 6  Symbol and Name updated 1299863 APPROVED
2005-12-06 Gtl6  gene trap locus 6  Gtl6_predicted  gene trap locus 6 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Gtl6_predicted  gene trap locus 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED