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Gene: Urm1 (ubiquitin related modifier 1) Rattus norvegicus

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Symbol:

Urm1

Name:

ubiquitin related modifier 1

RGD ID:

1306599

Description:

Orthologous to human URM1 (ubiquitin related modifier 1); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; bisphenol A; decabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC311840; RGD1306599; similar to RIKEN cDNA 2900073H19; ubiquitin related modifier 1 homolog; ubiquitin related modifier 1 homolog (S. cerevisiae); ubiquitin-related modifier 1; ubiquitin-related modifier 1 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	URM1 (ubiquitin related modifier 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Urm1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Urm1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	URM1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	URM1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Urm1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	URM1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	URM1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Urm1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Urm1 (ubiquitin related modifier 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	URM1 (ubiquitin related modifier 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	URM1 (ubiquitin related modifier 1)	Alliance	DIOPT (HGNC)
Mus musculus (house mouse):	Urm1 (ubiquitin related modifier 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	urm1 (ubiquitin related modifier 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Urm1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	URM1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	urm-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	33,489,974 - 33,514,942 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	33,489,892 - 33,516,715 (+)	Ensembl				GRCr8
mRatBN7.2	3	13,100,340 - 13,117,064 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	13,100,343 - 13,117,048 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	3	13,092,200 - 13,117,642 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	16,175,118 - 16,191,842 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	24,760,080 - 24,776,803 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,011,338 - 23,028,089 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	8,389,024 - 8,405,868 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	8,389,024 - 8,405,868 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	13,732,444 - 13,749,414 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	8,815,032 - 8,829,512 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	7,877,776 - 7,894,483 (+)	NCBI		Celera
RGSC_v3.1	3	8,815,349 - 8,832,632 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Disease Progression (ISO)

Stomach Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

Aroclor 1254 (ISO)

atrazine (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

decabromodiphenyl ether (EXP)

fenofibrate (ISO)

fipronil (EXP)

folic acid (ISO)

gentamycin (EXP)

ivermectin (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

pirinixic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein urmylation (IEA)

tRNA processing (IEA)

tRNA thio-modification (IEA,ISO)

tRNA wobble uridine modification (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

Molecular Function

protein binding (ISO)

sulfur carrier activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19017811	PMID:23376485

Genomics

Comparative Map Data

Urm1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	33,489,974 - 33,514,942 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	33,489,892 - 33,516,715 (+)	Ensembl				GRCr8
mRatBN7.2	3	13,100,340 - 13,117,064 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	13,100,343 - 13,117,048 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	3	13,092,200 - 13,117,642 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	16,175,118 - 16,191,842 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	24,760,080 - 24,776,803 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	23,011,338 - 23,028,089 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	8,389,024 - 8,405,868 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	8,389,024 - 8,405,868 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	13,732,444 - 13,749,414 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	8,815,032 - 8,829,512 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	7,877,776 - 7,894,483 (+)	NCBI		Celera
RGSC_v3.1	3	8,815,349 - 8,832,632 (+)	NCBI
Cytogenetic Map	3	p12	NCBI

URM1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	128,371,319 - 128,392,016 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	128,371,349 - 128,392,016 (+)	Ensembl			hg38	GRCh38
GRCh37	9	131,133,598 - 131,154,295 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	130,173,461 - 130,192,834 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	9	128,213,193 - 128,232,566	NCBI
Celera	9	101,784,501 - 101,803,918 (+)	NCBI		Celera
Cytogenetic Map	9	q34.11	NCBI
HuRef	9	100,746,421 - 100,767,118 (+)	NCBI		HuRef
CHM1_1	9	131,284,635 - 131,305,320 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	140,578,420 - 140,599,118 (+)	NCBI		T2T-CHM13v2.0

Urm1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	29,717,401 - 29,735,008 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	29,710,087 - 29,735,014 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	29,827,389 - 29,844,996 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	29,820,075 - 29,845,002 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	29,682,909 - 29,700,516 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	29,649,398 - 29,667,005 (+)	NCBI		MGSCv36	mm8
Celera	2	29,534,482 - 29,552,090 (+)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	20.67	NCBI

Urm1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955570	876,487 - 894,045 (+)	Ensembl
ChiLan1.0	NW_004955570	876,487 - 894,045 (+)	NCBI	ChiLan1.0	ChiLan1.0

URM1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	10,961,349 - 10,983,159 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	10,963,698 - 10,984,319 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	99,492,453 - 99,513,046 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	128,160,921 - 128,181,976 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	128,160,984 - 128,179,700 (+)	Ensembl			panPan2	panpan1.1

URM1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	55,141,050 - 55,157,176 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	55,141,801 - 55,157,066 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	54,336,026 - 54,352,084 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	56,063,152 - 56,079,212 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	56,061,935 - 56,079,188 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	54,822,745 - 54,838,806 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	55,137,011 - 55,153,063 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	55,228,902 - 55,244,958 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Urm1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	196,145,451 - 196,163,419 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	15,914,119 - 15,933,083 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	15,914,087 - 15,933,114 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

URM1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	268,798,462 - 268,815,530 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	268,798,439 - 268,815,553 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	302,788,192 - 302,805,447 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

URM1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	9,741,181 - 9,762,033 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666079	6,477,641 - 6,498,618 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Urm1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	6,503,882 - 6,520,671 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	6,503,882 - 6,520,807 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Urm1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	6,890,556 - 6,915,182 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Urm1
122 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	136
Count of miRNA genes:	106
Interacting mature miRNAs:	127
Transcripts:	ENSRNOT00000037494
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

AA942949

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	13,116,862 - 13,117,003 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	8,405,667 - 8,405,807	NCBI	Rnor6.0
Rnor_5.0	3	13,749,213 - 13,749,353	UniSTS	Rnor5.0
RGSC_v3.4	3	8,832,142 - 8,832,282	UniSTS	RGSC3.4
Celera	3	7,894,282 - 7,894,422	UniSTS
RH 3.4 Map	3	51.41	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	160	91	90	59	92	59	6	356	192	11	139	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001137562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC169094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP465324	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB313752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037494 ⟹ ENSRNOP00000032608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,489,892 - 33,514,942 (+)	Ensembl
mRatBN7.2 Ensembl	3	13,100,347 - 13,117,049 (+)	Ensembl
Rnor_6.0 Ensembl	3	8,389,024 - 8,405,868 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	13,115,268 - 13,117,642 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	13,100,343 - 13,117,048 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	13,092,200 - 13,117,642 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107675

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	13,100,309 - 13,117,642 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114356

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	13,104,396 - 13,117,174 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134103 ⟹ ENSRNOP00000111652

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	33,498,212 - 33,516,715 (+)	Ensembl

RefSeq Acc Id:

NM_001137562 ⟹ NP_001131034

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,498,219 - 33,514,942 (+)	NCBI
mRatBN7.2	3	13,100,340 - 13,117,064 (+)	NCBI
Rnor_6.0	3	8,389,024 - 8,405,868 (+)	NCBI
Rnor_5.0	3	13,732,444 - 13,749,414 (+)	NCBI
RGSC_v3.4	3	8,815,032 - 8,829,512 (+)	RGD
Celera	3	7,877,776 - 7,894,483 (+)	NCBI

Sequence:

show sequence

GCTAGTTTGGCTTCCTCAACATGGCGGCGCCCTTATGTGTGGAGGTGGAGTTCGGAGGTGGTGC
GGAGCTCCTGTTTGATGGGGTAAAAAAGCATCAAGTCACCTTGCCTGGGCAGGAGGAACCCTGG
GATATCCGGAACCTCCTTGTCTGGATCAAGACGAATTTGCTAAAAGAGCGGCCAGAGCTATTCA
TCCAGGGAGACAGTGTGCGGCCTGGAATCCTGGTCCTGATTAATGATGCCGACTGGGAACTGCT
GGGAGAGCTGGACTACCAGCTGCAGGACCAGGATAGCATCCTCTTCATCTCCACCCTGCATGGC
GGCTGAGGCCTCCTCGATTAGCCCAAGCACCTTTGCAAGGGGAACACAGGACAACCACAGACCC
CTCGGATGCTTCCAGGTCCTCCGTCCCCCTTGGCTGCCTCCTTCCCTGCTGTACCCCTGAGCTT
CCTGTATGCAGGGAAAAGAGGCCAGGTGCTAAAAATGAGCCTTTCTGGGCAAGGCGGCACGTGA
GCAGGGAGAGAGAGCAGGGAGGGAGAGCAGCCGCCTGAGCCCAGCACTCCTTCCAGCAGCTGAG
GTGGGGGAGGGTGCTCCTGTGCTGTGTCAGGAGTGGAGGGGCTCTGTGCCCAGGTGACCCAGCT
GCTTGCTGCTACGTCTTGGTGTATGTATGCTCTTAGTGGTGGCCTGGAAGGCACTCCAGTTCCC
GAGACATCTTCATGGGGAAGATGGATGGACTGTAGTAACTGATGAGAGGCTCCTCCCTTGCCAA
AGATTAGAGGGGCCTCCGCCTCAGTTTCCCCATCTGGACACAGAGAGCTCTGCTTGTCCCCCAC
TGATGTCATTATGGAACCCCAGCTGGGGTCCCCTATTCAGTGCTCACCTCCCTCCCCTCCACTC
AGCAGCTGCTCTCCTAGCTATACCCCTCCTCCCGTTCCCCCATCCCCAGCCCTTGACCCTGGCT
GGCCTCCCCCCCCCCCCCCCCCACATAGGCCACCAGATGGGCTCCTGAGACACTCTCCAGGCTG
CCTACAACTCATTCTGTTGGGGGTAGAAAATGGAAGGAAGTAGCCTAACTTTAGGCAGAGGGGG
GCGGGCCTCAGCATGTGTAACTCCAGGCTTCCTGAAACAAGCAGGATTTGGGTGTCCCCCCTTT
CCTCCATCCCTTCTGGAACTCTGGAGACTTCATGCCTGCAACAGCTGGCCTTGGGCAAATAAAG
AGACTAGGTTGTTTACTAGCCTTGCCTCA

hide sequence

RefSeq Acc Id:

XM_063283934 ⟹ XP_063140004

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	33,489,974 - 33,514,931 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001131034	(Get FASTA)	NCBI Sequence Viewer
	XP_063140004	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69094	(Get FASTA)	NCBI Sequence Viewer
	EDL93371	(Get FASTA)	NCBI Sequence Viewer
	EDL93372	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000100702
	ENSRNOP00000100702.1
	ENSRNOP00000111652.1

RefSeq Acc Id:	NP_001131034 ⟸ NM_001137562
- UniProtKB:	B6ID11 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPLCVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRNLLVWIKTNLLKERPELFIQGDSVR PGILVLINDADWELLGELDYQLQDQDSILFISTLHGG hide sequence

Ensembl Acc Id:

ENSRNOP00000032608 ⟸ ENSRNOT00000037494

RefSeq Acc Id:	XP_063140004 ⟸ XM_063283934
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000111652 ⟸ ENSRNOT00000134103

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B6ID11-F1-model_v2	AlphaFold	B6ID11	1-101	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691944

Promoter ID:

EPDNEW_R2469

Type:

multiple initiation site

Name:

Urm1_1

Description:

ubiquitin related modifier 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	8,389,038 - 8,389,098	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306599	AgrOrtholog
BioCyc Gene	G2FUF-50252	BioCyc
Ensembl Genes	ENSRNOG00000026636	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000064341	Ensembl
Ensembl Transcript	ENSRNOT00000037494	ENTREZGENE
	ENSRNOT00000037494.7	UniProtKB/TrEMBL
	ENSRNOT00000134103.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.20.30	UniProtKB/TrEMBL
InterPro	b-grasp_ferredoxin-like	UniProtKB/TrEMBL
	Mopterin_synth/thiamin_S_b	UniProtKB/TrEMBL
	Urm1	UniProtKB/TrEMBL
KEGG Report	rno:311840	UniProtKB/TrEMBL
NCBI Gene	311840	ENTREZGENE
PANTHER	PTHR14986	UniProtKB/TrEMBL
Pfam	Urm1	UniProtKB/TrEMBL
PhenoGen	Urm1	PhenoGen
PIRSF	Ubiquitin-related_modifier_1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000026636	RatGTEx
	ENSRNOG00000064341	RatGTEx
RNAcentral	URS00022AF1CD	RNACentral
	URS00022AF7B7	RNACentral
	URS00022B1EDC	RNACentral
	URS00022B23C6	RNACentral
	URS00022B509F	RNACentral
	URS00022B5C6C	RNACentral
Superfamily-SCOP	Mo_synth/thiamin_syn_S_b-grasp	UniProtKB/TrEMBL
UniProt	A0ABK0L766_RAT	UniProtKB/TrEMBL
	A0ABK0M1J9_RAT	UniProtKB/TrEMBL
	B6ID11	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-08-01	Urm1	ubiquitin related modifier 1	Urm1	ubiquitin related modifier 1 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Urm1	ubiquitin related modifier 1 homolog (S. cerevisiae)	RGD1306599_predicted	similar to RIKEN cDNA 2900073H19 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306599_predicted	similar to RIKEN cDNA 2900073H19 (predicted)	LOC311840_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC311840_predicted	similar to RIKEN cDNA 2900073H19 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD