Zdhhc12 (zinc finger DHHC-type palmitoyltransferase 12) - Rat Genome Database

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Gene: Zdhhc12 (zinc finger DHHC-type palmitoyltransferase 12) Rattus norvegicus
Analyze
Symbol: Zdhhc12
Name: zinc finger DHHC-type palmitoyltransferase 12
RGD ID: 1306593
Description: Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be involved in several processes, including gephyrin clustering involved in postsynaptic density assembly; negative regulation of NLRP3 inflammasome complex assembly; and peptidyl-L-cysteine S-palmitoylation. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be active in Golgi apparatus; dendritic spine; and endoplasmic reticulum. Orthologous to human ZDHHC12 (zinc finger DHHC-type palmitoyltransferase 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DHHC domain-containing cysteine-rich protein 12; DHHC-12; LOC366014; membrane-associated DHHC12 zinc finger protein; palmitoyltransferase ZDHHC12; probable palmitoyltransferase ZDHHC12; zinc finger DHHC domain-containing protein 12; zinc finger, DHHC domain containing 12; zinc finger, DHHC-type containing 12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,761,338 - 33,764,207 (-)NCBIGRCr8
mRatBN7.2313,363,504 - 13,366,383 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,363,504 - 13,366,474 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,438,171 - 16,440,875 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,023,137 - 25,025,841 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,273,727 - 23,276,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,656,397 - 8,659,102 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,656,412 - 8,659,102 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,008,555 - 14,011,260 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,096,320 - 9,099,025 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,096,621 - 9,099,325 (-)NCBI
Celera38,137,016 - 8,139,720 (-)NCBICelera
Cytogenetic Map3p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:16647879   PMID:23034182  


Genomics

Comparative Map Data
Zdhhc12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8333,761,338 - 33,764,207 (-)NCBIGRCr8
mRatBN7.2313,363,504 - 13,366,383 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl313,363,504 - 13,366,474 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx316,438,171 - 16,440,875 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0325,023,137 - 25,025,841 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0323,273,727 - 23,276,432 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.038,656,397 - 8,659,102 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl38,656,412 - 8,659,102 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0314,008,555 - 14,011,260 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.439,096,320 - 9,099,025 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.139,096,621 - 9,099,325 (-)NCBI
Celera38,137,016 - 8,139,720 (-)NCBICelera
Cytogenetic Map3p12NCBI
ZDHHC12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,720,873 - 128,724,127 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,720,870 - 128,724,127 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,483,152 - 131,486,406 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369130,522,969 - 130,526,229 (-)NCBINCBI36Build 36hg18NCBI36
Build 349128,562,704 - 128,565,962NCBI
Celera9102,133,934 - 102,137,194 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9101,092,809 - 101,095,741 (-)NCBIHuRef
CHM1_19131,634,114 - 131,637,374 (-)NCBICHM1_1
T2T-CHM13v2.09140,925,640 - 140,928,894 (-)NCBIT2T-CHM13v2.0
Zdhhc12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39229,980,956 - 29,983,647 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl229,980,956 - 29,983,660 (-)EnsemblGRCm39 Ensembl
GRCm38230,090,943 - 30,093,638 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl230,090,944 - 30,093,648 (-)EnsemblGRCm38mm10GRCm38
MGSCv37229,946,464 - 29,949,155 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36229,912,953 - 29,915,644 (-)NCBIMGSCv36mm8
Celera229,794,461 - 29,797,152 (-)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.15NCBI
Zdhhc12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555701,131,234 - 1,133,909 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555701,131,234 - 1,133,909 (-)NCBIChiLan1.0ChiLan1.0
ZDHHC12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21110,626,390 - 10,629,830 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1910,628,740 - 10,632,191 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0999,844,535 - 99,847,806 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19128,510,734 - 128,514,005 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9128,510,739 - 128,514,004 (-)Ensemblpanpan1.1panPan2
ZDHHC12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1954,877,188 - 54,880,579 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl954,877,110 - 54,880,553 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha954,072,606 - 54,075,998 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0955,798,243 - 55,801,640 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl955,798,303 - 55,801,636 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1954,558,838 - 54,562,230 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0954,871,500 - 54,874,882 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0954,965,010 - 54,968,403 (+)NCBIUU_Cfam_GSD_1.0
Zdhhc12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947196,432,761 - 196,435,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648716,199,742 - 16,203,858 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648716,201,288 - 16,203,818 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZDHHC12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1269,081,272 - 269,084,840 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11269,081,274 - 269,084,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21303,105,133 - 303,106,855 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZDHHC12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1129,419,784 - 9,423,091 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl129,419,852 - 9,422,774 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366609644,892 - 48,185 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zdhhc12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247606,273,994 - 6,276,776 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247606,273,989 - 6,276,788 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zdhhc12
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:130
Interacting mature miRNAs:149
Transcripts:ENSRNOT00000050908
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)3865816227494778Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)3822719447233430Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)3822719433703538Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)31043430624512004Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)31077882330356773Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
70191BpQTLcluster4Blood pressure QTL cluster 43arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)31077870450302886Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)31077882330356773Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)3865816227494778Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)31077870430357018Rat
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat

Markers in Region
RH134692  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,363,256 - 13,363,474 (+)MAPPERmRatBN7.2
Rnor_6.038,656,149 - 8,656,366NCBIRnor6.0
Rnor_5.0314,008,307 - 14,008,524UniSTSRnor5.0
RGSC_v3.439,096,072 - 9,096,289UniSTSRGSC3.4
Celera38,136,768 - 8,136,985UniSTS
RH 3.4 Map335.2UniSTS
Cytogenetic Map3p12UniSTS
AI011615  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2313,363,582 - 13,363,699 (+)MAPPERmRatBN7.2
Rnor_6.038,656,475 - 8,656,591NCBIRnor6.0
Rnor_5.0314,008,633 - 14,008,749UniSTSRnor5.0
RGSC_v3.439,096,398 - 9,096,514UniSTSRGSC3.4
Celera38,137,094 - 8,137,210UniSTS
RH 3.4 Map351.51UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 38 94 64 60 48 6 48 6 144 56 82 34 49 12

Sequence


Ensembl Acc Id: ENSRNOT00000050908   ⟹   ENSRNOP00000039802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl313,363,504 - 13,366,474 (-)Ensembl
Rnor_6.0 Ensembl38,656,412 - 8,659,102 (-)Ensembl
RefSeq Acc Id: NM_001013239   ⟹   NP_001013257
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8333,761,338 - 33,764,043 (-)NCBI
mRatBN7.2313,363,505 - 13,366,211 (-)NCBI
Rnor_6.038,656,397 - 8,659,102 (-)NCBI
Rnor_5.0314,008,555 - 14,011,260 (-)NCBI
RGSC_v3.439,096,320 - 9,099,025 (-)RGD
Celera38,137,016 - 8,139,720 (-)RGD
Sequence:
RefSeq Acc Id: XM_039105583   ⟹   XP_038961511
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8333,761,338 - 33,764,207 (-)NCBI
mRatBN7.2313,363,505 - 13,366,383 (-)NCBI
RefSeq Acc Id: XM_039105584   ⟹   XP_038961512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8333,761,338 - 33,764,082 (-)NCBI
mRatBN7.2313,363,504 - 13,366,272 (-)NCBI
RefSeq Acc Id: NP_001013257   ⟸   NM_001013239
- UniProtKB: Q2TGJ7 (UniProtKB/Swiss-Prot),   Q6DGF5 (UniProtKB/Swiss-Prot),   A6JTV1 (UniProtKB/TrEMBL),   A0A8L2QLS6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039802   ⟸   ENSRNOT00000050908
RefSeq Acc Id: XP_038961512   ⟸   XM_039105584
- Peptide Label: isoform X2
- UniProtKB: A6JTV2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961511   ⟸   XM_039105583
- Peptide Label: isoform X1
Protein Domains
DHHC   Palmitoyltransferase DHHC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6DGF5-F1-model_v2 AlphaFold Q6DGF5 1-267 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691949
Promoter ID:EPDNEW_R2474
Type:multiple initiation site
Name:Zdhhc12_1
Description:zinc finger, DHHC-type containing 12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.038,659,120 - 8,659,180EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306593 AgrOrtholog
BioCyc Gene G2FUF-50236 BioCyc
Ensembl Genes ENSRNOG00000015791 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050908.5 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7107692 IMAGE-MGC_LOAD
InterPro Palmitoyltrfase_DHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:366014 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:94803 IMAGE-MGC_LOAD
NCBI Gene 366014 ENTREZGENE
PANTHER PALMITOYLTRANSFERASE ZDHHC12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zdhhc12 PhenoGen
PROSITE DHHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015791 RatGTEx
UniProt A0A8L2QLS6 ENTREZGENE, UniProtKB/TrEMBL
  A6JTV1 ENTREZGENE, UniProtKB/TrEMBL
  A6JTV2 ENTREZGENE, UniProtKB/TrEMBL
  Q2TGJ7 ENTREZGENE
  Q6DGF5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q2TGJ7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Zdhhc12  zinc finger DHHC-type palmitoyltransferase 12  Zdhhc12  zinc finger, DHHC-type containing 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Zdhhc12  zinc finger, DHHC-type containing 12  Zdhhc12  zinc finger, DHHC domain containing 12  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Zdhhc12  zinc finger, DHHC domain containing 12  Zdhhc12_predicted  zinc finger, DHHC domain containing 12 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Zdhhc12_predicted  zinc finger, DHHC domain containing 12 (predicted)      Symbol and Name status set to approved 70820 APPROVED