Gca (grancalcin) - Rat Genome Database

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Gene: Gca (grancalcin) Rattus norvegicus
Analyze
Symbol: Gca
Name: grancalcin
RGD ID: 1306589
Description: Predicted to enable calcium ion binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be located in cytoplasm and endomembrane system. Orthologous to human GCA (grancalcin); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC295647
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gcal1  
Candidate Gene For: Bp132
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8367,705,874 - 67,738,475 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl367,705,890 - 67,737,387 (+)EnsemblGRCr8
mRatBN7.2347,297,320 - 47,329,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl347,297,383 - 47,328,581 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx350,652,068 - 50,684,657 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0359,235,600 - 59,268,188 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0357,008,777 - 57,041,316 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0348,625,965 - 48,661,317 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl348,626,038 - 48,661,317 (+)Ensemblrn6Rnor6.0
Rnor_5.0355,291,465 - 55,326,008 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4344,616,037 - 44,648,897 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera346,938,285 - 46,969,570 (+)NCBICelera
RGSC_v3.1344,512,448 - 44,541,386 (+)NCBI
Cytogenetic Map3q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
Benzo[ghi]perylene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
carbamazepine  (ISO)
CGP 52608  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
diquat  (ISO)
diuron  (EXP)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
furan  (EXP)
genistein  (EXP)
gold atom  (ISO)
gold(0)  (ISO)
isoflavones  (ISO)
ivermectin  (ISO)
ketamine  (EXP)
methapyrilene  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
propiconazole  (ISO)
quercetin  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
succimer  (ISO)
tamibarotene  (ISO)
tamoxifen  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:11717497   PMID:12804766   PMID:19056867   PMID:20458337   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Gca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8367,705,874 - 67,738,475 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl367,705,890 - 67,737,387 (+)EnsemblGRCr8
mRatBN7.2347,297,320 - 47,329,913 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl347,297,383 - 47,328,581 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx350,652,068 - 50,684,657 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0359,235,600 - 59,268,188 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0357,008,777 - 57,041,316 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0348,625,965 - 48,661,317 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl348,626,038 - 48,661,317 (+)Ensemblrn6Rnor6.0
Rnor_5.0355,291,465 - 55,326,008 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4344,616,037 - 44,648,897 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera346,938,285 - 46,969,570 (+)NCBICelera
RGSC_v3.1344,512,448 - 44,541,386 (+)NCBI
Cytogenetic Map3q21NCBI
GCA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382162,318,763 - 162,375,396 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2162,318,839 - 162,371,595 (+)Ensemblhg38GRCh38
GRCh372163,175,273 - 163,219,633 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362162,908,896 - 162,925,875 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342163,026,156 - 163,043,136NCBI
Celera2156,810,897 - 156,829,481 (+)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2155,082,887 - 155,101,451 (+)NCBIHuRef
CHM1_12163,206,468 - 163,225,034 (+)NCBICHM1_1
T2T-CHM13v2.02162,775,430 - 162,833,885 (+)NCBIT2T-CHM13v2.0
Gca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39262,494,671 - 62,524,453 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl262,494,629 - 62,524,453 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38262,664,327 - 62,694,109 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl262,664,285 - 62,694,109 (+)Ensemblmm10GRCm38
MGSCv37262,502,384 - 62,532,166 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36262,465,166 - 62,494,948 (+)NCBIMGSCv36mm8
Celera264,354,587 - 64,386,731 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map236.47NCBI
Gca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544911,504,058 - 11,522,661 (-)Ensembl
ChiLan1.0NW_00495544911,503,201 - 11,538,809 (-)NCBIChiLan1.0ChiLan1.0
GCA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21365,010,804 - 65,054,157 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B65,025,747 - 65,069,132 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B49,612,156 - 49,657,114 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B166,980,348 - 167,023,578 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B167,005,108 - 167,023,581 (+)EnsemblpanPan2panpan1.1
GCA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1367,727,578 - 7,780,439 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl367,749,191 - 7,778,968 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha367,871,005 - 7,924,587 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0367,859,231 - 7,913,061 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl367,880,907 - 7,913,800 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1367,877,439 - 7,931,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0367,918,593 - 7,972,227 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0368,026,108 - 8,079,928 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303124,914,685 - 124,942,542 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646916,686,192 - 16,703,109 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646916,675,897 - 16,703,024 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GCA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1568,985,328 - 69,054,052 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11569,015,230 - 69,054,057 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21576,511,222 - 76,544,884 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GCA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11047,732,741 - 47,777,928 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1047,757,459 - 47,775,055 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040151,755,186 - 151,800,283 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247323,160,488 - 3,180,391 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247323,130,440 - 3,193,853 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gca
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1540,243,518 - 40,272,923 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gca
340 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:111
Interacting mature miRNAs:144
Transcripts:ENSRNOT00000009697
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)35986366373704481Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)35986366387321459Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)35986366387321459Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)34790417270710963Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)35860129171157804Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)35860129171157804Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)34790417270710963Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)35986366383358329Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)358925062103925062Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)34790417270710963Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)35860129171157804Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
4889975Bmd81Bone mineral density QTL 814.3tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)35911940270710963Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009697   ⟹   ENSRNOP00000009697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl367,705,890 - 67,737,387 (+)Ensembl
mRatBN7.2 Ensembl347,297,383 - 47,328,581 (+)Ensembl
Rnor_6.0 Ensembl348,626,038 - 48,661,317 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094169   ⟹   ENSRNOP00000078433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl367,715,962 - 67,735,888 (+)Ensembl
mRatBN7.2 Ensembl347,307,309 - 47,327,328 (+)Ensembl
RefSeq Acc Id: NM_001106483   ⟹   NP_001099953
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8367,705,890 - 67,738,475 (+)NCBI
mRatBN7.2347,297,330 - 47,329,913 (+)NCBI
Rnor_6.0348,626,038 - 48,661,317 (+)NCBI
Rnor_5.0355,291,465 - 55,326,008 (+)NCBI
RGSC_v3.4344,616,037 - 44,648,897 (+)RGD
Celera346,938,285 - 46,969,570 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039104486   ⟹   XP_038960414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8367,705,874 - 67,738,475 (+)NCBI
mRatBN7.2347,297,320 - 47,328,548 (+)NCBI
RefSeq Acc Id: XM_063283272   ⟹   XP_063139342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8367,705,883 - 67,734,479 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099953 (Get FASTA)   NCBI Sequence Viewer  
  NP_001416721 (Get FASTA)   NCBI Sequence Viewer  
  XP_038960414 (Get FASTA)   NCBI Sequence Viewer  
  XP_063139342 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL79012 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009697.7
  ENSRNOP00000078433
  ENSRNOP00000078433.1
RefSeq Acc Id: NP_001099953   ⟸   NM_001106483
- UniProtKB: D3ZYI0 (UniProtKB/TrEMBL),   A6HLW1 (UniProtKB/TrEMBL),   A0A8I5ZL87 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009697   ⟸   ENSRNOT00000009697
RefSeq Acc Id: XP_038960414   ⟸   XM_039104486
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000078433   ⟸   ENSRNOT00000094169
RefSeq Acc Id: XP_063139342   ⟸   XM_063283272
- Peptide Label: isoform X2
Protein Domains
EF-hand

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZYI0-F1-model_v2 AlphaFold D3ZYI0 1-220 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692102
Promoter ID:EPDNEW_R2627
Type:initiation region
Name:Gca_1
Description:grancalcin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0348,625,985 - 48,626,045EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306589 AgrOrtholog
BioCyc Gene G2FUF-49584 BioCyc
Ensembl Genes ENSRNOG00000007359 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009697.9 UniProtKB/TrEMBL
  ENSRNOT00000094169 ENTREZGENE
  ENSRNOT00000094169.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.900 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro EF-hand-like_dom UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_Ca-bd UniProtKB/TrEMBL
KEGG Report rno:295647 UniProtKB/TrEMBL
NCBI Gene 295647 ENTREZGENE
PANTHER CALPAIN, SMALL SUBUNIT 1 A-RELATED UniProtKB/TrEMBL
  GRANCALCIN UniProtKB/TrEMBL
Pfam EF-hand_8 UniProtKB/TrEMBL
PhenoGen Gca PhenoGen
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007359 RatGTEx
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8I5ZL87 ENTREZGENE, UniProtKB/TrEMBL
  A6HLW1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYI0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Gca  grancalcin   Gca_predicted  grancalcin (predicted)  'predicted' is removed 2292626 APPROVED
2005-04-01 Gca_predicted  grancalcin (predicted)  Gca    Data merged from RGD:1298530 737654 APPROVED
2005-01-12 Gca_predicted  grancalcin (predicted)      Symbol and Name status set to approved 70820 APPROVED