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Gene: Faf2 (Fas associated factor family member 2) Rattus norvegicus

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Symbol:

Faf2

Name:

Fas associated factor family member 2

RGD ID:

1306577

Description:

Predicted to enable several functions, including enzyme binding activity; lipase inhibitor activity; and ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process; retrograde protein transport, ER to cytosol; and stress granule disassembly. Predicted to act upstream of or within lipid droplet organization. Predicted to be located in lipid droplet. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Predicted to be active in endoplasmic reticulum. Orthologous to human FAF2 (Fas associated factor family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

2210404d11rik; FAS-associated factor 2; LOC291000; MGC108962; protein expressed in T-cells and eosinophils in atopic dermatitis; RGD1306577; similar to RIKEN cDNA 2210404D11; UBX domain containing 8; UBX domain-containing protein 8; Ubxd8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FAF2 (Fas associated factor family member 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Faf2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Faf2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FAF2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FAF2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Faf2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FAF2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FAF2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Faf2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Faf2 (Fas associated factor family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Faf2 (Fas associated factor family member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	FAF2 (Fas associated factor family member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	faf2 (Fas associated factor family member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	H40L08.1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	H40L08.1	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Faf2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	UBX3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	UBX3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	faf2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,952,329 - 9,994,596 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	9,952,329 - 9,994,711 (-)	Ensembl				GRCr8
mRatBN7.2	17	9,947,211 - 9,989,474 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,947,220 - 9,989,485 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	9,961,656 - 10,003,682 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	11,495,078 - 11,537,125 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,958,092 - 10,000,115 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	10,485,650 - 10,527,886 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,485,642 - 10,527,864 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	12,611,437 - 12,653,503 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	16,011,489 - 16,051,440 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	10,024,573 - 10,062,663 (-)	NCBI		Celera
RGSC_v3.1	17	16,011,489 - 16,051,440 (-)	NCBI
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (EXP)

3-chloropropane-1,2-diol (EXP)

6-propyl-2-thiouracil (EXP)

aconitine (EXP)

acrylamide (EXP)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

choline (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

gentamycin (EXP)

ivermectin (ISO)

L-methionine (ISO)

methidathion (ISO)

methotrexate (ISO)

NMS-873 (ISO)

perfluorohexanesulfonic acid (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

sevoflurane (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

testosterone enanthate (ISO)

tetrahydropalmatine (ISO)

thimerosal (ISO)

titanium dioxide (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ERAD pathway (IBA,IEA,ISO,ISS)

lipid droplet organization (ISO)

proteasomal protein catabolic process (IEA)

proteasome-mediated ubiquitin-dependent protein catabolic process (IEA,ISO)

response to unfolded protein (IEA)

retrograde protein transport, ER to cytosol (IEA,ISO)

stress granule disassembly (IEA,ISO,ISS)

Cellular Component

cytoplasm (IEA)

endoplasmic reticulum (IBA,IEA,ISO,ISS)

lipid droplet (IEA,ISO)

VCP-NPL4-UFD1 AAA ATPase complex (IEA,ISO)

Molecular Function

lipase binding (IEA,ISO)

lipase inhibitor activity (IEA,ISO)

protein binding (ISO)

protein-macromolecule adaptor activity (IEA,ISO,ISS)

ubiquitin binding (IBA,IEA,ISO)

ubiquitin protein ligase binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14741744	PMID:15489334	PMID:18775313	PMID:23297223	PMID:24215460	PMID:25660456	PMID:26692333

Genomics

Comparative Map Data

Faf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,952,329 - 9,994,596 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	9,952,329 - 9,994,711 (-)	Ensembl				GRCr8
mRatBN7.2	17	9,947,211 - 9,989,474 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,947,220 - 9,989,485 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	9,961,656 - 10,003,682 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	11,495,078 - 11,537,125 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	9,958,092 - 10,000,115 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	10,485,650 - 10,527,886 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,485,642 - 10,527,864 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	12,611,437 - 12,653,503 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	16,011,489 - 16,051,440 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	10,024,573 - 10,062,663 (-)	NCBI		Celera
RGSC_v3.1	17	16,011,489 - 16,051,440 (-)	NCBI
Cytogenetic Map	17	p14	NCBI

FAF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	176,448,385 - 176,510,074 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	176,447,628 - 176,510,075 (+)	Ensembl			hg38	GRCh38
GRCh37	5	175,875,386 - 175,937,075 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	175,807,962 - 175,869,681 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	5	172,564,653 - 172,626,310 (-)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	170,799,773 - 170,861,507 (+)	NCBI		HuRef
CHM1_1	5	175,308,267 - 175,369,883 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	176,992,793 - 177,054,650 (+)	NCBI		T2T-CHM13v2.0

Faf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	54,769,597 - 54,811,876 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	54,769,597 - 54,811,876 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	54,621,784 - 54,664,063 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	54,621,784 - 54,664,063 (+)	Ensembl			mm10	GRCm38
MGSCv37	13	54,723,145 - 54,765,424 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	54,631,441 - 54,673,685 (+)	NCBI		MGSCv36	mm8
Celera	13	55,687,533 - 55,729,876 (+)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	28.88	NCBI

Faf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	28,737,279 - 28,797,564 (+)	Ensembl
ChiLan1.0	NW_004955408	28,737,597 - 28,797,143 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,525,358 - 171,587,028 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	169,664,897 - 169,726,570 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	171,743,071 - 171,804,687 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	178,813,998 - 178,875,208 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	178,814,100 - 178,876,108 (+)	Ensembl			panPan2	panpan1.1

FAF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	36,819,754 - 36,890,901 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	36,822,735 - 36,890,839 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	36,768,219 - 36,858,914 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	37,167,583 - 37,258,767 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	37,185,639 - 37,258,704 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	36,993,390 - 37,084,488 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	37,181,225 - 37,271,902 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	37,689,358 - 37,780,696 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Faf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	121,685,230 - 121,747,712 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	710,100 - 772,765 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	710,168 - 772,455 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	81,401,859 - 81,454,262 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	81,401,852 - 81,454,272 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	83,006,522 - 83,055,934 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	78,421,558 - 78,515,671 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	78,456,545 - 78,516,245 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666075	9,587,142 - 9,648,555 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Faf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	13,608,360 - 13,674,175 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624733	13,608,993 - 13,674,200 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Faf2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	72,964,938 - 73,007,868 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Faf2
210 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	243
Count of miRNA genes:	156
Interacting mature miRNAs:	181
Transcripts:	ENSRNOT00000064477
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9266755	40968173	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4360057	27233623	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
1582224	Epfw4	Epididymal fat weight QTL 4	3.5	0.0058	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	17	9206505	23859062	Rat
1582225	Bw67	Body weight QTL 67	6.2	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
1582226	Bw64	Body weight QTL 64	4.2	0.0017	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31706603	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
1582208	Kidm32	Kidney mass QTL 32	3.9	0.0018	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	9206505	23859062	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	1	22181410	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	1	36045694	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	1	21499218	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
1581553	Pur14	Proteinuria QTL 14	5.3	0.0001	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	17	7985243	16523460	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	8574342	32199534	Rat
1582258	Bw76	Body weight QTL 76	4.6	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	38037084	Rat
1582199	Insul5	Insulin level QTL 5	3.4	0.0119	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	17	9206505	23859062	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4360057	27233623	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2120843	22087569	Rat
1582241	Bw70	Body weight QTL 70	4.6	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
1582245	Bw73	Body weight QTL 73	4.6	0.0004	body mass (VT:0001259)	body weight (CMO:0000012)	17	9206505	23859062	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22877318	Rat

Markers in Region

RH134439

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	9,949,687 - 9,949,872 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	10,488,122 - 10,488,306	NCBI	Rnor6.0
Rnor_5.0	17	12,613,909 - 12,614,093	UniSTS	Rnor5.0
RGSC_v3.4	17	16,011,645 - 16,011,829	UniSTS	RGSC3.4
Celera	17	10,024,729 - 10,024,913	UniSTS
RH 3.4 Map	17	92.3	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH142910

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	9,952,171 - 9,952,277 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	10,490,606 - 10,490,711	NCBI	Rnor6.0
Rnor_5.0	17	12,616,393 - 12,616,498	UniSTS	Rnor5.0
RGSC_v3.4	17	16,014,129 - 16,014,234	UniSTS	RGSC3.4
Celera	17	10,027,213 - 10,027,318	UniSTS
RH 3.4 Map	17	89.6	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH138786

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	9,958,281 - 9,958,490 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	10,496,712 - 10,496,920	NCBI	Rnor6.0
Rnor_5.0	17	12,622,499 - 12,622,707	UniSTS	Rnor5.0
RGSC_v3.4	17	16,020,236 - 16,020,444	UniSTS	RGSC3.4
Celera	17	10,033,322 - 10,033,530	UniSTS
RH 3.4 Map	17	89.6	UniSTS
Cytogenetic Map	17	p14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017445	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771488	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC091224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000064477 ⟹ ENSRNOP00000063246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,952,329 - 9,977,231 (-)	Ensembl
mRatBN7.2 Ensembl	17	9,949,533 - 9,989,417 (-)	Ensembl
Rnor_6.0 Ensembl	17	10,487,967 - 10,527,839 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000091837 ⟹ ENSRNOP00000068627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,952,329 - 9,994,541 (-)	Ensembl
mRatBN7.2 Ensembl	17	9,947,220 - 9,989,411 (-)	Ensembl
Rnor_6.0 Ensembl	17	10,485,642 - 10,527,864 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095037 ⟹ ENSRNOP00000080533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,952,329 - 9,994,541 (-)	Ensembl
mRatBN7.2 Ensembl	17	9,947,220 - 9,989,411 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096763 ⟹ ENSRNOP00000086396

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,952,329 - 9,994,711 (-)	Ensembl
mRatBN7.2 Ensembl	17	9,947,220 - 9,989,485 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119973 ⟹ ENSRNOP00000088680

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	9,952,329 - 9,968,061 (-)	Ensembl
mRatBN7.2 Ensembl	17	9,947,220 - 9,962,946 (-)	Ensembl

RefSeq Acc Id:

NM_001017445 ⟹ NP_001017445

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,952,329 - 9,994,541 (-)	NCBI
mRatBN7.2	17	9,947,211 - 9,989,428 (-)	NCBI
Rnor_6.0	17	10,487,966 - 10,527,839 (-)	NCBI
Rnor_5.0	17	12,611,437 - 12,653,503 (-)	NCBI
RGSC_v3.4	17	16,011,489 - 16,051,440 (-)	RGD
Celera	17	10,024,573 - 10,062,663 (-)	RGD

Sequence:

show sequence

GGCGGCGGCAAAATGGCGGCGCCTGAGGAGCAGGATCTAACTCAGGAGCAGACCGAGAAGCTGC
TGCAGTTTCAGGATCTGACTGGCATAGACTCCATGGAGCAGTGTCGCCTTGCCTTGGAACAGCA
TAACTGGAACATGGAGGGTAACCACTGTTGACAGGCTGCCGTCCAGGACAGACTGAATGAGCAA
GAGGGTGTACCAAGTGTTTTCAATCCACCTCCATCTCGACCCCTACAGGTTAATACAGCTGACC
ACAGGATCTACAGCTACGTTGTCTCAAGACCACAACCAAGGGGCCTGCTTGGATGGGGTTATTA
CTTGATAATGCTTCCATTCCGGTTTACCTATTACACGATACTTGATATATTTAGGTTTGCTCTT
CGTTTTATACGGCCTGACCCTCGCAGCCGGGTCACTGACCCTGTTGGGGACATTGTTTCATTTA
TGCACTCTTTTGAAGAGAAATATGGGAGGGCACACCCTGTCTTCTACCAGGGAACGTACAGCCA
GGCACTTAGTGACGCCAAGCGGGAACTTCGATTTCTTTTGGTTTATCTTCATGGGGATGACCAC
CAGGACTCTGATGAGTTCTGCCGCAATGCTCTCTGCGCACCTGAGGTCATCTCGCTGATAAACA
GCCGGATGCTTTTTTGGGCTTGTTCTACAAACAAACCGGAGGGGTACAGGGTCTCCCAGGCTTT
ACGAGAGAACACCTATCCATTCCTGGCTATGATTATGTTGAAGGACCGGCGAATGACTGTGGTA
GGAAGGCTCGAAGGCCTCATTCAACCTGATGACCTCATCAACCAGTTGACGTTCATTATGGATG
CAAACCAGACTTACCTGGTGTCAGAACGCCTAGAAAGGGAAGAAAGGAACCAAACCCAGGTGCT
GAGACAACAGCAGGATGAAGCCTACCTGGCTTCTCTCAGGGCAGACCAGGAGAAAGAGAGGAAG
AAAAGGGAGGAGAGAGAGCGGAAGCGCCGGAAGGAGGAGGAGGTGCAGCAGCAGAAGCTGGCGG
AGGAGCGAAGGCGGCAGAACTTACAGGAGGAGAAGGAGAGGAAGCTGGAGTGCCTGCCCCCTGA
GCCCTCCCCAGATGACCCTGACAGTGTCAAGATCATTTTCAAGTTACCCAATGATTCCAGAGTA
GAGCGACGATTCCATTTTTCACAGTCTCTAACAGTCATCCACGACTTCTTATTCTCCTTGAAGG
AAAGCCCTGAAAAGTTTCAGATTGAAGCCAATTTTCCAAGACGGGTACTTCCCTGTGTCCCTTC
AGAGGAATGGCCCAACCCCCCCACCCTGCAGGAGGCGGGACTAAGCCACACAGAAGTTCTCTTT
GTTCAGGACCTGACAGACGAATGACACTTTTCTGCCTCCTTCTTCCCACCCCAATCCCTAAAAG
AAATGGAAAAACAAAAACAGAGAACAAGAGATAAATTCATATTATTATTATTATTATAATACAA
TATTTTTTTTAAAAAAACTGCTGCATCCTGCGGAAGGATCGGAAACCATGCTGCCTGCAAGAGG
CACAGCCTGTGTGCGTGTGCAAGGCCGGCAGTGAATGCACCTGCCCAGCAGACTCGCCTTCCAC
AGCCGCCTCTCCATCCTCCAGTGAAGACTTCACCTCCAACCCATCCCTCCGCCCACGTGGGGAA
GGAGACATTCCCACTGTTTCTCAGTCATTCTTGCTTTTGTAGAAAAGAAAAAAAGAAACCCACC
ATCAGCTCCAGCAGCAGCTCCTGAGGACCTGCTTCTCCTACTTCCAGAGGAAGAGGGGAGAGAA
GGATGGACTGACTGCCCACAGTTCATGAATAACTTTGTTTCTGTTTGCTTTGTAATGATAATGA
CCAAAGGAGTGAGGCTGACTTAGGTGTATTTTTTCCTCAGATTTGATAAAGAGCCAGTGCCCTG
GGCTCCATGGCCCACGGCGGTGTAATAAAGGTGCCCTGGGCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399396 ⟹ NP_001386325

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,952,329 - 9,994,541 (-)	NCBI
mRatBN7.2	17	9,947,211 - 9,989,428 (-)	NCBI

RefSeq Acc Id:

XM_008771488 ⟹ XP_008769710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,952,329 - 9,994,596 (-)	NCBI
mRatBN7.2	17	9,947,216 - 9,989,474 (-)	NCBI
Rnor_6.0	17	10,485,650 - 10,527,886 (-)	NCBI

Sequence:

show sequence

GAGATCACTTCCGGCGGGTGACGGTGCGGACGGGTCAGGAGCGTAGAGGCGGCGGCAAAATGGC
GGCGCCTGAGGAGCAGGATCTAACTCAGGAGCAGACCGAGAAGCTGCTGCAGTTTCAGGATCTG
ACTGGCATAGACTCCATGGAGCAGTGTCGCCTTGCCTTGGAACAGCATAACTGGAACATGGAGG
CTGCCGTCCAGGACAGACTGAATGAGCAAGAGGGTGTACCAAGTGTTTTCAATCCACCTCCATC
TCGACCCCTACAGGTTAATACAGCTGACCACAGGATCTACAGCTACGTTGTCTCAAGACCACAA
CCAAGGGCACTTAGTGACGCCAAGCGGGAACTTCGATTTCTTTTGGTTTATCTTCATGGGGATG
ACCACCAGGACTCTGATGAGTTCTGCCGCAATGCTCTCTGCGCACCTGAGGTCATCTCGCTGAT
AAACAGCCGGATGCTTTTTTGGGCTTGTTCTACAAACAAACCGGAGGGGTACAGGGTCTCCCAG
GCTTTACGAGAGAACACCTATCCATTCCTGGCTATGATTATGTTGAAGGACCGGCGAATGACTG
TGGTAGGAAGGCTCGAAGGCCTCATTCAACCTGATGACCTCATCAACCAGTTGACGTTCATTAT
GGATGCAAACCAGACTTACCTGGTGTCAGAACGCCTAGAAAGGGAAGAAAGGAACCAAACCCAG
GTGCTGAGACAACAGCAGGATGAAGCCTACCTGGCTTCTCTCAGGGCAGACCAGGAGAAAGAGA
GGAAGAAAAGGGAGGAGAGAGAGCGGAAGCGCCGGAAGGAGGAGGAGGTGCAGCAGCAGAAGCT
GGCGGAGGAGCGAAGGCGGCAGAACTTACAGGAGGAGAAGGAGAGGAAGCTGGAGTGCCTGCCC
CCTGAGCCCTCCCCAGATGACCCTGACAGTGTCAAGATCATTTTCAAGTTACCCAATGATTCCA
GAGTAGAGCGACGATTCCATTTTTCACAGTCTCTAACAGTCATCCACGACTTCTTATTCTCCTT
GAAGGAAAGCCCTGAAAAGTTTCAGATTGAAGCCAATTTTCCAAGACGGGTACTTCCCTGTGTC
CCTTCAGAGGAATGGCCCAACCCCCCCACCCTGCAGGAGGCGGGACTAAGCCACACAGAAGTTC
TCTTTGTTCAGGACCTGACAGACGAATGACACTTTTCTGCCTCCTTCTTCCCACCCCAATCCCT
AAAAGAAATGGAAAAACAAAAACAGAGAACAAGAGATAAATTCATATTATTATTATTATTATAA
TACAATATTTTTTTTAAAAAAACTGCTGCATCCTGCGGAAGGATCGGAAACCATGCTGCCTGCA
AGAGGCACAGCCTGTGTGCGTGTGCAAGGCCGGCAGTGAATGCACCTGCCCAGCAGACTCGCCT
TCCACAGCCGCCTCTCCATCCTCCAGTGAAGACTTCACCTCCAACCCATCCCTCCGCCCACGTG
GGGAAGGAGACATTCCCACTGTTTCTCAGTCATTCTTGCTTTTGTAGAAAAGAAAAAAAGAAAC
CCACCATCAGCTCCAGCAGCAGCTCCTGAGGACCTGCTTCTCCTACTTCCAGAGGAAGAGGGGA
GAGAAGGATGGACTGACTGCCCACAGTTCATGAATAACTTTGTTTCTGTTTGCTTTGTAATGAT
AATGACCAAAGGAGTGAGGCTGACTTAGGTGTATTTTTTCCTCAGATTTGATAAAGAGCCAGTG
CCCTGGGCTCCATGGCCCACGGCGGTGTAATAAAGGTGCCCTGGGCTCATTTGTGCTTCCTTCT
GCCACTGTTCCTCTCACGGTCCCAGAGGTATCCCATTTGGAGCAATGAGAGGAAGTCTGGGATT
GTGACCCACAAAAGGCTGTGTGTGGGGTGTGTGTTCCCTTTACACACACATACAGCTTCTCCTT
GGCATCTGTACCAGGTGGTGGTGAAGGGGTCTCAGCCAAAGGACAGCAGCTCCTGCTTCCCCTC
TGACTGCACACACTGCTCTTCCCGGCTTTCCTAACTTGCCGAGCTCGGTGCCTTTCCAGAGGAC
TAGGGCCCGGGCCCTCCGTCCCACCTGCGGAGGCTCGTCCTGTTTGAGTGCACATATGATAATG
ATGTTTAAGGATATAGACCCATCGCAGGCATGGTGGTGTGCTGGGAGGCAGAGGCAGCAGATCT
CTGAATTCCAGGCCAGCCTGGTCTACAGAGTGAGGAGGCCCTGTCTCAAAGTTTTGAACCAGAA
ACTTTGAAAGAGAAATTGGACTCCCAGCCTGTGTGTGTTGTTGGAAAGCACATTTCATGGCACC
AGAGACAGTTTGCAGCCTTCCTCTTGCCGTGGTGAAGCAACAGGAGCCTTTTCCCCCTTGAAAT
GTCTCGTCTGTGATTGAGTTTTTGGTAGTGGGTATGTGGTTGAGCCATGTATGAGCACATGCCA
GTGTGTGCTGACAAGTGTTCCAGTATGGGCTTGCTGTGCTGGTACAGGCTTGACACTGCCGCTC
TCTGAGGTTCCTGTAGTTCACTAGTGTGTGGGGGCATTCCAGTCCGGAGAAAGCATAGCTTGTG
TTGGTCACCTCCAAGAGACCCTCTAAAGCCACTTCTCTCTGTGACAGTCCTGTGCTTCTGTTCT
CTGCAGCTCTCTGTTGTTAGAGGACGGCTTGTGGAGTCATTTGGAAAACCTGAGCAGATCCCTG
AGGCCTTAGCACAGGGCTCTGATTCTACCTTGGGAAGTGTTAGCGCAGCTAGGCCGGCTGGAAC
TACAGTGATAGGTTGAGAGGACGCTCAGGAGAAGTCTGTCTTGCTGACATCGATGCAGAGAGGC
TTTCCCACTTGGAGCCACCCTCCCAGCTTGTAGTCCCTGTCTGACTGCCCGGCACATGGGCATG
TGTACTGTGGCAGTGTCTTGTTCATGGCTGCTTGGGGAAGTTCTGATTTTCCCTCTTAATCTCG
TTCTGTAATGTGTACATTTTAATTTTATGCCTTTTGCCTTTTGATAACTGCAAAAATATACTAG
ATGCCAGACTAATAAAAAAGGGGTCCACTCTTGCCACAACTCTGAGGGCAGCCTGTTCATGTCC
TGGAGGCTTTACCCGTCACCTGTCCCCCTCCCTTAGTTTTCCTCTCAGCTTTTTGAGATAGGTT
CTGATGGCCCAAAGTGGCCTCAAACTCTACATACCCAAGGCTGGCCTTGAACTACCCTCCTGCT
TCCCACTCCTGTGGTGCAAATGTGGGTATGCACCACCACGTGAGGCTCTCCAGCAGCTGTGAAA
CACTTTCGTGTTCTTGCTGTCCCCTGTTCTGCTGTCTTGAGGCCATTTCTCTCCCTGGGTGAGC
TGTAGACTTCACCTTTCGTCCCCCAGGCCAGTTCTGTCTGGGACTCCCTAAACCTATGAGCTAG
AAGAGACCTTCGACCATTTGCTGCTGTTTAAATTGCTTCCAAAAGATCCCACCAATTGTTCCAA
AGTCGTCATGGACAGTGGAAGCATTTGTTTCCAGTTGTGCCCCTCCATCCCCTGTCAGATGGCC
TCGGCTGAATGACCATGGGGATGACCAAGCAACAATGCCTGAGTGAGTTGAATTTTTGCAGCCT
CAGTCTGGTCTTTTCTTCCTCTGCAGAATTGTCTGTGGCAGATAGGTTTTGTTTTTGTTTTCCT
CCTTGCTTGCTTCCACTATGAGATGCAGAGAAGGCAAGAGAATTCCTATTTCTTTAAAAACTTA
CACAAAAAAGAAAAAAACCCTAGAATTTTCCAACTGATCAGTTATTATGAAAATTGCTGACAGT
GCCAAGGCCAAGGAAAGAATGTCAGAGGCGACTGAGAGGCGCAGCAGCCCCAGAGCACATATTC
AGAGGGTGTCACCTGGCACTGAACAGGGACCTCCACCTTCCAGCTGGTTGGCTTTTCTGTTTGT
CAGGGGGGAGGTTTTGACTTGTGAAGAACGCAGCAACAGAAGATGCATCCACAGAGATGCAGTG
CCCCACCTGTACTGCACCTGAGTAGTTAATAATTTCCTGAAGAAATCTAGTGTACTTCAAATTT
TTTCATAAAGGTTTACATTGTATTGTAGGTTAATATTAAACGTTTTATAACAAAAAATGTA

hide sequence

RefSeq Acc Id:

XM_063276148 ⟹ XP_063132218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	9,952,329 - 9,977,237 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001017445	(Get FASTA)	NCBI Sequence Viewer
	NP_001386325	(Get FASTA)	NCBI Sequence Viewer
	XP_008769710	(Get FASTA)	NCBI Sequence Viewer
	XP_063132218	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91224	(Get FASTA)	NCBI Sequence Viewer
	EDL94037	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063246
	ENSRNOP00000063246.2
	ENSRNOP00000068627
	ENSRNOP00000080533
	ENSRNOP00000086396
GenBank Protein	Q5BK32	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001017445 ⟸ NM_001017445
- Peptide Label:	isoform 2
- UniProtKB:	Q5BK32 (UniProtKB/Swiss-Prot), A0A0G2JTA0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLPFRFTYYTILDIFRFALRFIRPDPRSRVTDPVGDIVSFMHSFEEKYGRAHPVFYQGTYSQAL SDAKRELRFLLVYLHGDDHQDSDEFCRNALCAPEVISLINSRMLFWACSTNKPEGYRVSQALRE NTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTFIMDANQTYLVSERLEREERNQTQVLRQ QQDEAYLASLRADQEKERKKREERERKRRKEEEVQQQKLAEERRRQNLQEEKERKLECLPPEPS PDDPDSVKIIFKLPNDSRVERRFHFSQSLTVIHDFLFSLKESPEKFQIEANFPRRVLPCVPSEE WPNPPTLQEAGLSHTEVLFVQDLTDE hide sequence

RefSeq Acc Id:	XP_008769710 ⟸ XM_008771488
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZPX1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPEEQDLTQEQTEKLLQFQDLTGIDSMEQCRLALEQHNWNMEAAVQDRLNEQEGVPSVFNPP PSRPLQVNTADHRIYSYVVSRPQPRALSDAKRELRFLLVYLHGDDHQDSDEFCRNALCAPEVIS LINSRMLFWACSTNKPEGYRVSQALRENTYPFLAMIMLKDRRMTVVGRLEGLIQPDDLINQLTF IMDANQTYLVSERLEREERNQTQVLRQQQDEAYLASLRADQEKERKKREERERKRRKEEEVQQQ KLAEERRRQNLQEEKERKLECLPPEPSPDDPDSVKIIFKLPNDSRVERRFHFSQSLTVIHDFLF SLKESPEKFQIEANFPRRVLPCVPSEEWPNPPTLQEAGLSHTEVLFVQDLTDE hide sequence

Ensembl Acc Id:

ENSRNOP00000068627 ⟸ ENSRNOT00000091837

Ensembl Acc Id:

ENSRNOP00000063246 ⟸ ENSRNOT00000064477

Ensembl Acc Id:

ENSRNOP00000088680 ⟸ ENSRNOT00000119973

Ensembl Acc Id:

ENSRNOP00000080533 ⟸ ENSRNOT00000095037

Ensembl Acc Id:

ENSRNOP00000086396 ⟸ ENSRNOT00000096763

RefSeq Acc Id:	NP_001386325 ⟸ NM_001399396
- Peptide Label:	isoform 1
- UniProtKB:	A6KAX9 (UniProtKB/TrEMBL), A0A0G2JTA0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132218 ⟸ XM_063276148
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A8N6 (UniProtKB/TrEMBL), A0A0G2JTA0 (UniProtKB/TrEMBL)

Protein Domains

UBX

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BK32-F1-model_v2	AlphaFold	Q5BK32	1-346	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700319

Promoter ID:

EPDNEW_R10843

Type:

initiation region

Name:

Faf2_1

Description:

Fas associated factor family member 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	10,527,850 - 10,527,910	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306577	AgrOrtholog
BioCyc Gene	G2FUF-10177	BioCyc
Ensembl Genes	ENSRNOG00000017607	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000064477	ENTREZGENE
	ENSRNOT00000064477.3	UniProtKB/Swiss-Prot
	ENSRNOT00000091837	ENTREZGENE
	ENSRNOT00000095037	ENTREZGENE
	ENSRNOT00000096763	ENTREZGENE
Gene3D-CATH	Glutaredoxin	UniProtKB/Swiss-Prot
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7108443	IMAGE-MGC_LOAD
	IMAGE:7128668	IMAGE-MGC_LOAD
InterPro	FAF1_2-like_UAS	UniProtKB/Swiss-Prot
	Thioredoxin-like_sf	UniProtKB/Swiss-Prot
	UAS	UniProtKB/Swiss-Prot
	Ubiquitin-like_domsf	UniProtKB/Swiss-Prot
	UBX_dom	UniProtKB/Swiss-Prot
	UBX_domain-protein	UniProtKB/Swiss-Prot
KEGG Report	rno:291000	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108962	IMAGE-MGC_LOAD
	MGC:94816	IMAGE-MGC_LOAD
NCBI Gene	291000	ENTREZGENE
PANTHER	FAS-ASSOCIATED FACTOR 2	UniProtKB/Swiss-Prot
	FAS-ASSOCIATED PROTEIN	UniProtKB/Swiss-Prot
Pfam	FAF1	UniProtKB/Swiss-Prot
	UBX	UniProtKB/Swiss-Prot
PhenoGen	Faf2	PhenoGen
PROSITE	UBX	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000017607	RatGTEx
SMART	UAS	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52833	UniProtKB/Swiss-Prot
	SSF54236	UniProtKB/Swiss-Prot
UniProt	A0A0G2JTA0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZPX1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A8N6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GGH0_RAT	UniProtKB/TrEMBL
	A6KAX9	ENTREZGENE, UniProtKB/TrEMBL
	FAF2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-08-29	Faf2	Fas associated factor family member 2	Ubxd8	UBX domain containing 8	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Ubxd8	UBX domain containing 8	RGD1306577	similar to RIKEN cDNA 2210404D11	Symbol and Name updated	1299863	APPROVED
2005-12-06	RGD1306577	similar to RIKEN cDNA 2210404D11	RGD1306577_predicted	similar to RIKEN cDNA 2210404D11 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306577_predicted	similar to RIKEN cDNA 2210404D11 (predicted)	LOC291000_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291000_predicted	similar to RIKEN cDNA 2210404D11 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD