Exosc2 (exosome component 2) - Rat Genome Database

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Gene: Exosc2 (exosome component 2) Rattus norvegicus
Analyze
Symbol: Exosc2
Name: exosome component 2
RGD ID: 1306573
Description: Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process and positive regulation of cell growth. Predicted to be located in cytosol and nucleolus. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Human ortholog(s) of this gene implicated in short stature, hearing loss, retinitis pigmentosa, and distinctive facies. Orthologous to human EXOSC2 (exosome component 2); PARTICIPATES IN RNA degradation pathway; INTERACTS WITH 17beta-estradiol; 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: exosome complex component RRP4; exosome complex exonuclease RRP4; LOC366017
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,360,652 - 35,370,948 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl335,360,666 - 35,371,373 (+)EnsemblGRCr8
mRatBN7.2314,962,930 - 14,973,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,962,917 - 14,973,575 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx318,036,215 - 18,046,468 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,621,221 - 26,631,474 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,868,310 - 24,878,557 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0310,151,734 - 10,161,997 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,151,284 - 10,161,989 (-)Ensemblrn6Rnor6.0
Rnor_5.0315,511,096 - 15,521,359 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4310,786,985 - 10,797,248 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera39,711,298 - 9,721,560 (+)NCBICelera
RGSC_v3.1310,683,157 - 10,693,688 (+)NCBI
Cytogenetic Map3p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
afimoxifene  (ISO)
all-trans-retinoic acid  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Bufotalin  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cylindrospermopsin  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
ethyl methanesulfonate  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
GSK-J4  (ISO)
indole-3-methanol  (EXP)
inulin  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
maneb  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
Tributyltin oxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
tunicamycin  (ISO)
urethane  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12419256   PMID:17174896   PMID:17545563   PMID:20531389   PMID:25931508   PMID:26166824  


Genomics

Comparative Map Data
Exosc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,360,652 - 35,370,948 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl335,360,666 - 35,371,373 (+)EnsemblGRCr8
mRatBN7.2314,962,930 - 14,973,645 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl314,962,917 - 14,973,575 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx318,036,215 - 18,046,468 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0326,621,221 - 26,631,474 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0324,868,310 - 24,878,557 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0310,151,734 - 10,161,997 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl310,151,284 - 10,161,989 (-)Ensemblrn6Rnor6.0
Rnor_5.0315,511,096 - 15,521,359 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4310,786,985 - 10,797,248 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera39,711,298 - 9,721,560 (+)NCBICelera
RGSC_v3.1310,683,157 - 10,693,688 (+)NCBI
Cytogenetic Map3p12NCBI
EXOSC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389130,693,760 - 130,704,894 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9130,693,721 - 130,707,288 (+)Ensemblhg38GRCh38
GRCh379133,569,147 - 133,580,281 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369132,558,998 - 132,570,077 (+)NCBIBuild 36Build 36hg18NCBI36
Build 349130,598,730 - 130,609,808NCBI
Celera9104,107,689 - 104,118,983 (+)NCBICelera
Cytogenetic Map9q34.12NCBI
HuRef9103,055,772 - 103,067,067 (+)NCBIHuRef
CHM1_19133,718,191 - 133,729,489 (+)NCBICHM1_1
T2T-CHM13v2.09142,898,712 - 142,909,846 (+)NCBIT2T-CHM13v2.0
Exosc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39231,560,727 - 31,571,593 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl231,560,727 - 31,571,361 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38231,670,715 - 31,681,352 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl231,670,715 - 31,681,349 (+)Ensemblmm10GRCm38
MGSCv37231,526,257 - 31,536,840 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36231,492,745 - 31,503,329 (+)NCBIMGSCv36mm8
Celera231,371,398 - 31,381,973 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map221.86NCBI
Exosc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955513639,731 - 651,418 (+)Ensembl
ChiLan1.0NW_004955513639,798 - 648,360 (+)NCBIChiLan1.0ChiLan1.0
EXOSC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2118,645,017 - 8,658,268 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan198,647,358 - 8,660,558 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09101,815,368 - 101,826,464 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19130,464,487 - 130,475,719 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9130,464,487 - 130,475,719 (+)EnsemblpanPan2panpan1.1
EXOSC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1953,266,396 - 53,276,236 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl953,266,401 - 53,276,677 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha952,464,948 - 52,475,561 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0954,165,433 - 54,176,045 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl954,166,710 - 54,176,018 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,942,940 - 52,953,572 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0953,263,746 - 53,274,359 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0953,356,968 - 53,367,401 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Exosc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947197,906,868 - 197,918,427 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648717,675,303 - 17,687,943 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648717,675,401 - 17,686,224 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOSC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1270,748,537 - 270,758,111 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11270,748,534 - 270,757,717 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21304,671,187 - 304,680,415 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EXOSC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1127,441,812 - 7,452,979 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl127,442,791 - 7,452,964 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660798,011,684 - 8,022,863 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exosc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247605,035,663 - 5,044,549 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247605,036,185 - 5,044,504 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Exosc2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v153,944,429 - 3,954,299 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Exosc2
52 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:352
Count of miRNA genes:199
Interacting mature miRNAs:232
Transcripts:ENSRNOT00000012312
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
8693641Alc30Alcohol consumption QTL 3020.739drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)33083238444921701Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
BF387046  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,971,524 - 14,971,689 (-)MAPPERmRatBN7.2
Rnor_6.0310,153,240 - 10,153,404NCBIRnor6.0
Rnor_5.0315,512,602 - 15,512,766UniSTSRnor5.0
RGSC_v3.4310,795,578 - 10,795,742UniSTSRGSC3.4
Celera39,719,889 - 9,720,053UniSTS
Cytogenetic Map3p12UniSTS
BE107032  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2314,973,017 - 14,973,174 (-)MAPPERmRatBN7.2
Rnor_6.0310,151,755 - 10,151,911NCBIRnor6.0
Rnor_5.0315,511,117 - 15,511,273UniSTSRnor5.0
RGSC_v3.4310,797,071 - 10,797,227UniSTSRGSC3.4
Celera39,721,383 - 9,721,539UniSTS
RH 3.4 Map356.0UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012312   ⟹   ENSRNOP00000012311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,360,674 - 35,371,373 (+)Ensembl
mRatBN7.2 Ensembl314,962,947 - 14,973,575 (+)Ensembl
Rnor_6.0 Ensembl310,151,284 - 10,161,989 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093246   ⟹   ENSRNOP00000076189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl310,153,166 - 10,153,554 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl310,156,867 - 10,161,989 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl335,360,666 - 35,369,045 (+)Ensembl
mRatBN7.2 Ensembl314,962,917 - 14,971,079 (+)Ensembl
Rnor_6.0 Ensembl310,153,755 - 10,161,989 (-)Ensembl
RefSeq Acc Id: NM_001108952   ⟹   NP_001102422
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,360,666 - 35,370,929 (+)NCBI
mRatBN7.2314,962,930 - 14,973,195 (+)NCBI
Rnor_6.0310,151,734 - 10,161,997 (-)NCBI
Rnor_5.0315,511,096 - 15,521,359 (-)NCBI
RGSC_v3.4310,786,985 - 10,797,248 (+)RGD
Celera39,711,298 - 9,721,560 (+)RGD
Sequence:
RefSeq Acc Id: XM_039105586   ⟹   XP_038961514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,362,057 - 35,370,948 (+)NCBI
mRatBN7.2314,964,305 - 14,973,645 (+)NCBI
RefSeq Acc Id: XM_063284261   ⟹   XP_063140331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8335,360,652 - 35,369,890 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102422 (Get FASTA)   NCBI Sequence Viewer  
  XP_038961514 (Get FASTA)   NCBI Sequence Viewer  
  XP_063140331 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93269 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000012311
  ENSRNOP00000012311.3
  ENSRNOP00000076582.1
RefSeq Acc Id: NP_001102422   ⟸   NM_001108952
- UniProtKB: D3ZBP3 (UniProtKB/TrEMBL),   A6JU28 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012311   ⟸   ENSRNOT00000012312
Ensembl Acc Id: ENSRNOP00000076189   ⟸   ENSRNOT00000093246
RefSeq Acc Id: XP_038961514   ⟸   XM_039105586
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063140331   ⟸   XM_063284261
- Peptide Label: isoform X1
Protein Domains
Exosome complex component N-terminal   K Homology   RRP4 S1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZBP3-F1-model_v2 AlphaFold D3ZBP3 1-293 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691973
Promoter ID:EPDNEW_R2498
Type:single initiation site
Name:Exosc2_1
Description:exosome component 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0310,161,989 - 10,162,049EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306573 AgrOrtholog
BioCyc Gene G2FUF-50173 BioCyc
Ensembl Genes ENSRNOG00000009245 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012312 ENTREZGENE
  ENSRNOT00000012312.8 UniProtKB/TrEMBL
  ENSRNOT00000093692.3 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.100 UniProtKB/TrEMBL
  2.40.50.140 UniProtKB/TrEMBL
InterPro Exosome_cplx_N_dom UniProtKB/TrEMBL
  Exosome_RNA_bind1/RRP40/RRP4 UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  RRP4_S1 UniProtKB/TrEMBL
KEGG Report rno:366017 UniProtKB/TrEMBL
NCBI Gene 366017 ENTREZGENE
PANTHER EXOSOME COMPLEX COMPONENT RRP4 UniProtKB/TrEMBL
  PTHR21321 UniProtKB/TrEMBL
Pfam ECR1_N UniProtKB/TrEMBL
  KH_6 UniProtKB/TrEMBL
  RRP4_S1 UniProtKB/TrEMBL
PhenoGen Exosc2 PhenoGen
RatGTEx ENSRNOG00000009245 RatGTEx
Superfamily-SCOP Ribosomal L27 protein-like UniProtKB/TrEMBL
  SSF50249 UniProtKB/TrEMBL
  SSF54791 UniProtKB/TrEMBL
UniProt A0A8I5Y5D3_RAT UniProtKB/TrEMBL
  A6JU28 ENTREZGENE, UniProtKB/TrEMBL
  D3ZBP3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Exosc2  exosome component 2   Exosc2_predicted  exosome component 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Exosc2_predicted  exosome component 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED