Mtmr1 (myotubularin related protein 1) - Rat Genome Database

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Gene: Mtmr1 (myotubularin related protein 1) Rattus norvegicus
Analyze
Symbol: Mtmr1
Name: myotubularin related protein 1
RGD ID: 1306569
Description: Predicted to enable phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity; phosphatidylinositol-3-phosphate phosphatase activity; and protein homodimerization activity. Predicted to be involved in phosphatidylinositol dephosphorylation; protein destabilization; and regulation of phosphatidylinositol dephosphorylation. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm and membrane. Orthologous to human MTMR1 (myotubularin related protein 1); INTERACTS WITH amitrole; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC317296; myotubularin-related protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818229,390 - 262,893 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl18229,404 - 262,892 (+)EnsemblGRCr8
mRatBN7.218215,031 - 248,541 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18215,089 - 248,541 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx18230,016 - 263,481 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0181,017,853 - 1,051,318 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018231,923 - 265,389 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.018291,785 - 325,415 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18291,780 - 325,377 (-)Ensemblrn6Rnor6.0
Rnor_5.018337,401 - 371,027 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.418205,546 - 238,997 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera18210,086 - 243,538 (+)NCBICelera
RGSC_v3.118205,641 - 237,603 (+)NCBI
Cytogenetic Map18p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA,IEA,ISO,ISS)
endomembrane system  (IEA)
membrane  (IBA)
plasma membrane  (IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11733541   PMID:12217958   PMID:12477932   PMID:16787938   PMID:27018598   PMID:30361391  


Genomics

Comparative Map Data
Mtmr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818229,390 - 262,893 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl18229,404 - 262,892 (+)EnsemblGRCr8
mRatBN7.218215,031 - 248,541 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18215,089 - 248,541 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx18230,016 - 263,481 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0181,017,853 - 1,051,318 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018231,923 - 265,389 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.018291,785 - 325,415 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18291,780 - 325,377 (-)Ensemblrn6Rnor6.0
Rnor_5.018337,401 - 371,027 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.418205,546 - 238,997 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera18210,086 - 243,538 (+)NCBICelera
RGSC_v3.118205,641 - 237,603 (+)NCBI
Cytogenetic Map18p13NCBI
MTMR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X150,692,962 - 150,765,108 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX150,692,971 - 150,765,165 (+)Ensemblhg38GRCh38
GRCh37X149,861,435 - 149,933,581 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X149,612,527 - 149,684,233 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X149,532,414 - 149,604,136NCBI
CeleraX150,109,440 - 150,181,123 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX138,746,677 - 138,793,029 (+)NCBIHuRef
CHM1_1X149,736,219 - 149,807,918 (+)NCBICHM1_1
T2T-CHM13v2.0X148,960,611 - 149,032,751 (+)NCBIT2T-CHM13v2.0
Mtmr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X70,408,332 - 70,462,802 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX70,408,366 - 70,462,802 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X71,364,760 - 71,419,196 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX71,364,760 - 71,419,196 (+)Ensemblmm10GRCm38
MGSCv37X68,617,935 - 68,672,371 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X67,625,316 - 67,679,752 (+)NCBIMGSCv36mm8
CeleraX62,344,835 - 62,399,305 (+)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX36.75NCBI
Mtmr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554986,462,626 - 6,528,380 (+)Ensembl
ChiLan1.0NW_0049554986,462,706 - 6,528,297 (+)NCBIChiLan1.0ChiLan1.0
MTMR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X150,831,189 - 150,902,584 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X150,834,798 - 150,906,190 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X140,343,740 - 140,415,134 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X150,281,374 - 150,346,900 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX150,279,183 - 150,346,900 (+)EnsemblpanPan2panpan1.1
MTMR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X118,936,865 - 118,999,630 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX118,937,470 - 118,999,920 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX104,316,768 - 104,380,906 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X121,155,483 - 121,219,628 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX121,155,477 - 121,230,341 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X117,881,398 - 117,945,410 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X120,359,465 - 120,423,334 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X120,241,922 - 120,305,948 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mtmr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X116,483,467 - 116,562,518 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367141,693,935 - 1,772,978 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367141,693,919 - 1,772,974 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,394,921 - 122,453,905 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X122,394,768 - 122,455,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X140,009,688 - 140,070,233 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X125,276,674 - 125,354,065 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX125,281,758 - 125,354,377 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606562,977,776 - 63,031,062 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mtmr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249231,072,957 - 1,143,182 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046249231,073,009 - 1,143,183 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Mtmr1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11534,670,968 - 34,704,390 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Mtmr1
243 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000003638
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)18125071266Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
6903356Bp354Blood pressure QTL 3544.6arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18115642423Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18126032889Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18126032889Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18125022372Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat

Markers in Region
BE114560  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218247,110 - 247,260 (-)MAPPERmRatBN7.2
Rnor_6.018293,066 - 293,215NCBIRnor6.0
Rnor_5.018338,682 - 338,831UniSTSRnor5.0
RGSC_v3.418237,567 - 237,716UniSTSRGSC3.4
Celera18242,108 - 242,257UniSTS
RH 3.4 Map1835.0UniSTS
Cytogenetic Map18p13UniSTS
RH134574  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218217,997 - 218,184 (-)MAPPERmRatBN7.2
Rnor_6.018322,282 - 322,468NCBIRnor6.0
Rnor_5.018367,898 - 368,084UniSTSRnor5.0
RGSC_v3.418208,455 - 208,641UniSTSRGSC3.4
Celera18212,995 - 213,181UniSTS
RH 3.4 Map1835.0UniSTS
Cytogenetic Map18p13UniSTS
RH139616  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218248,284 - 248,494 (-)MAPPERmRatBN7.2
Rnor_6.018291,832 - 292,041NCBIRnor6.0
Rnor_5.018337,448 - 337,657UniSTSRnor5.0
RH 3.4 Map1835.5UniSTS
Cytogenetic Map18p13UniSTS
AI230194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218241,556 - 241,766 (-)MAPPERmRatBN7.2
Rnor_6.018298,559 - 298,768NCBIRnor6.0
Rnor_5.018344,175 - 344,384UniSTSRnor5.0
RGSC_v3.418232,014 - 232,223UniSTSRGSC3.4
Celera18236,554 - 236,763UniSTS
RH 3.4 Map1835.0UniSTS
Cytogenetic Map18p13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001415695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC099234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003638   ⟹   ENSRNOP00000003638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl18229,417 - 262,892 (+)Ensembl
mRatBN7.2 Ensembl18215,089 - 248,541 (+)Ensembl
Rnor_6.0 Ensembl18291,785 - 325,377 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000078032   ⟹   ENSRNOP00000069284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl18229,404 - 262,891 (+)Ensembl
mRatBN7.2 Ensembl18215,089 - 248,541 (+)Ensembl
Rnor_6.0 Ensembl18291,780 - 325,374 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097796   ⟹   ENSRNOP00000077609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl18229,406 - 262,888 (+)Ensembl
mRatBN7.2 Ensembl18221,371 - 248,541 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000157188   ⟹   ENSRNOP00000110451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl18229,414 - 262,891 (+)Ensembl
RefSeq Acc Id: NM_001191725   ⟹   NP_001178654
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,417 - 262,893 (+)NCBI
mRatBN7.218215,064 - 248,541 (+)NCBI
Rnor_6.018291,785 - 325,377 (-)NCBI
Rnor_5.018337,401 - 371,027 (-)NCBI
Celera18210,086 - 243,538 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001415695   ⟹   NP_001402624
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,417 - 262,893 (+)NCBI
mRatBN7.218215,064 - 248,541 (+)NCBI
RefSeq Acc Id: XM_039096935   ⟹   XP_038952863
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,394 - 262,889 (+)NCBI
mRatBN7.218215,034 - 248,541 (+)NCBI
RefSeq Acc Id: XM_039096937   ⟹   XP_038952865
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,734 - 262,889 (+)NCBI
mRatBN7.218215,379 - 248,541 (+)NCBI
RefSeq Acc Id: XM_039096939   ⟹   XP_038952867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,734 - 262,889 (+)NCBI
mRatBN7.218215,379 - 248,541 (+)NCBI
RefSeq Acc Id: XM_039096940   ⟹   XP_038952868
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,393 - 254,989 (+)NCBI
mRatBN7.218215,032 - 240,636 (+)NCBI
RefSeq Acc Id: XM_039096941   ⟹   XP_038952869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,390 - 252,774 (+)NCBI
mRatBN7.218215,031 - 238,419 (+)NCBI
RefSeq Acc Id: XM_063277455   ⟹   XP_063133525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr818229,394 - 262,889 (+)NCBI
RefSeq Acc Id: NP_001178654   ⟸   NM_001191725
- Peptide Label: isoform 1
- UniProtKB: D3ZKK5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069284   ⟸   ENSRNOT00000078032
Ensembl Acc Id: ENSRNOP00000003638   ⟸   ENSRNOT00000003638
RefSeq Acc Id: XP_038952869   ⟸   XM_039096941
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038952868   ⟸   XM_039096940
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038952863   ⟸   XM_039096935
- Peptide Label: isoform X2
- UniProtKB: A0A8I5Y1D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952865   ⟸   XM_039096937
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y1D5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952867   ⟸   XM_039096939
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000077609   ⟸   ENSRNOT00000097796
RefSeq Acc Id: NP_001402624   ⟸   NM_001415695
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JUZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133525   ⟸   XM_063277455
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y1D5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110451   ⟸   ENSRNOT00000157188
Protein Domains
Myotubularin phosphatase   Tyrosine specific protein phosphatases

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUZ0-F1-model_v2 AlphaFold A0A0G2JUZ0 1-672 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700622
Promoter ID:EPDNEW_R11146
Type:multiple initiation site
Name:Mtmr1_1
Description:myotubularin related protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.018325,416 - 325,476EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306569 AgrOrtholog
BioCyc Gene G2FUF-8439 BioCyc
Ensembl Genes ENSRNOG00000002697 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003638 ENTREZGENE
  ENSRNOT00000003638.8 UniProtKB/TrEMBL
  ENSRNOT00000078032 ENTREZGENE
  ENSRNOT00000078032.3 UniProtKB/TrEMBL
  ENSRNOT00000097796 ENTREZGENE
  ENSRNOT00000097796.2 UniProtKB/TrEMBL
  ENSRNOT00000157188.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  MTMR1/MTMR2 UniProtKB/TrEMBL
  MTMR1_PH-GRAM UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH_like_dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr/Dual-sp_Pase UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
KEGG Report rno:317296 UniProtKB/TrEMBL
NCBI Gene 317296 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
  PTHR10807:SF40 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
PhenoGen Mtmr1 PhenoGen
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002697 RatGTEx
SMART GRAM UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF52799 UniProtKB/TrEMBL
UniProt A0A0G2JUZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y1D5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LXX3_RAT UniProtKB/TrEMBL
  D3ZKK5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mtmr1  myotubularin related protein 1   Mtmr1_predicted  myotubularin related protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mtmr1_predicted  myotubularin related protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED