Dst (dystonin) - Rat Genome Database

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Gene: Dst (dystonin) Rattus norvegicus
Analyze
Symbol: Dst
Name: dystonin
RGD ID: 1306566
Description: Predicted to enable several functions, including integrin binding activity; microtubule plus-end binding activity; and protein homodimerization activity. Predicted to be involved in several processes, including cytoskeleton organization; hemidesmosome assembly; and maintenance of cell polarity. Predicted to act upstream of or within axonogenesis and retrograde axonal transport. Predicted to be located in several cellular components, including H zone; cytoskeleton; and endoplasmic reticulum. Predicted to be active in several cellular components, including focal adhesion; hemidesmosome; and type III intermediate filament. Predicted to colocalize with intermediate filament. Human ortholog(s) of this gene implicated in epidermolysis bullosa simplex and hereditary sensory and autonomic neuropathy type 6. Orthologous to human DST (dystonin); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bullous pemphigoid antigen 1; LOC316313
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8943,631,716 - 44,025,535 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl943,631,517 - 44,025,533 (+)EnsemblGRCr8
mRatBN7.2936,135,657 - 36,529,617 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl936,135,284 - 36,529,615 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx944,733,010 - 45,026,540 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0949,864,187 - 50,157,722 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0948,146,091 - 48,439,616 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0937,902,336 - 38,296,961 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,902,303 - 38,196,273 (-)Ensemblrn6Rnor6.0
Rnor_5.0937,586,701 - 37,979,658 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4932,757,554 - 33,051,275 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera933,927,773 - 34,321,367 (+)NCBICelera
RGSC_v3.1932,758,967 - 33,051,638 (+)NCBI
Cytogenetic Map9q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-dichloroaniline  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bortezomib  (ISO)
Brodifacoum  (EXP)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
decabromodiphenyl ether  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (EXP)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furfural  (ISO)
gallic acid  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hexadecanoic acid  (ISO)
indometacin  (ISO)
irinotecan  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melphalan  (ISO)
methamphetamine  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
ML-7  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-ethyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
nickel dichloride  (EXP)
Octicizer  (ISO)
okadaic acid  (ISO)
oleic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
permethrin  (EXP)
phenethyl isothiocyanate  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propiconazole  (EXP)
Ptaquiloside  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenomethionine  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
tamibarotene  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
tetraphene  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
Y-27632  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1634998   PMID:7736575   PMID:8707838   PMID:8889548   PMID:10428034   PMID:11375975   PMID:11751855   PMID:12482924   PMID:14576348   PMID:14581450   PMID:16289082   PMID:17114649  
PMID:17287360   PMID:18638474   PMID:19403692   PMID:19632184   PMID:19932097   PMID:20209123   PMID:21423176   PMID:21630459   PMID:23269794   PMID:23376485   PMID:33450132  


Genomics

Comparative Map Data
Dst
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8943,631,716 - 44,025,535 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl943,631,517 - 44,025,533 (+)EnsemblGRCr8
mRatBN7.2936,135,657 - 36,529,617 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl936,135,284 - 36,529,615 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx944,733,010 - 45,026,540 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0949,864,187 - 50,157,722 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0948,146,091 - 48,439,616 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0937,902,336 - 38,296,961 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl937,902,303 - 38,196,273 (-)Ensemblrn6Rnor6.0
Rnor_5.0937,586,701 - 37,979,658 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4932,757,554 - 33,051,275 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera933,927,773 - 34,321,367 (+)NCBICelera
RGSC_v3.1932,758,967 - 33,051,638 (+)NCBI
Cytogenetic Map9q21NCBI
DST
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38656,457,996 - 56,954,830 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl656,457,987 - 56,954,830 (-)Ensemblhg38GRCh38
GRCh37656,322,794 - 56,819,628 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36656,430,744 - 56,816,422 (-)NCBIBuild 36Build 36hg18NCBI36
Celera657,984,956 - 58,169,868 (-)NCBICelera
Cytogenetic Map6p12.1NCBI
HuRef656,158,712 - 56,652,953 (-)NCBIHuRef
CHM1_1656,325,822 - 56,819,767 (-)NCBICHM1_1
T2T-CHM13v2.0656,299,279 - 56,793,877 (-)NCBIT2T-CHM13v2.0
Dst
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,946,969 - 34,347,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl133,947,306 - 34,347,742 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38133,907,888 - 34,308,662 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,908,225 - 34,308,661 (+)Ensemblmm10GRCm38
MGSCv37134,068,670 - 34,365,497 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36133,956,371 - 34,253,198 (+)NCBIMGSCv36mm8
Celera133,786,289 - 34,078,455 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map112.91NCBI
Dst
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555023,267,527 - 3,610,823 (+)Ensembl
ChiLan1.0NW_0049555023,175,918 - 3,610,823 (+)NCBIChiLan1.0ChiLan1.0
DST
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2570,931,526 - 71,425,728 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1666,808,384 - 67,306,877 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0656,014,832 - 56,513,346 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1657,646,402 - 58,144,563 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl657,646,402 - 58,039,636 (-)EnsemblpanPan2panpan1.1
DST
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11223,715,637 - 24,195,220 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1223,716,466 - 24,195,416 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1223,605,476 - 24,084,492 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01224,213,304 - 24,693,512 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1224,213,299 - 24,576,848 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11223,705,703 - 24,191,186 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01223,812,683 - 24,292,223 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01223,943,092 - 24,423,680 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dst
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494659,187,310 - 59,615,541 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364764,344,716 - 4,771,878 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364764,344,673 - 4,772,892 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DST
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl728,812,252 - 29,300,152 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1728,812,423 - 29,300,149 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2733,273,626 - 33,751,908 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DST
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11714,652,044 - 15,133,172 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1714,652,233 - 15,133,862 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605821,021,492 - 21,263,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dst
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475318,321,591 - 18,674,329 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475318,321,591 - 18,778,090 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dst
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14110,161,980 - 110,558,831 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dst
2698 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:526
Count of miRNA genes:187
Interacting mature miRNAs:206
Transcripts:ENSRNOT00000016538, ENSRNOT00000017235, ENSRNOT00000044452, ENSRNOT00000046621, ENSRNOT00000060007, ENSRNOT00000068447
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)949664545496645Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)949664545496645Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)949664545496645Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat

Markers in Region
D9Rat191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,503,273 - 36,503,422 (-)MAPPERmRatBN7.2
Rnor_6.0937,928,384 - 37,928,532NCBIRnor6.0
Rnor_5.0937,612,749 - 37,612,897UniSTSRnor5.0
RGSC_v3.4933,024,934 - 33,025,083RGDRGSC3.4
RGSC_v3.4933,024,935 - 33,025,083UniSTSRGSC3.4
Celera934,295,042 - 34,295,190UniSTS
RGSC_v3.1933,026,348 - 33,026,497RGD
FHH x ACI Map924.71RGD
FHH x ACI Map924.71UniSTS
Cytogenetic Map9q21UniSTS
BF405229  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8944,011,584 - 44,012,296 (+)Marker Load Pipeline
mRatBN7.2936,515,662 - 36,516,374 (-)MAPPERmRatBN7.2
Rnor_6.0937,915,433 - 37,916,144NCBIRnor6.0
Rnor_5.0937,599,798 - 37,600,509UniSTSRnor5.0
RGSC_v3.4933,037,323 - 33,038,034UniSTSRGSC3.4
Celera934,307,430 - 34,308,141UniSTS
RH 3.4 Map9343.3UniSTS
Cytogenetic Map9q21UniSTS
RH143165  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8943,900,821 - 43,901,069 (+)Marker Load Pipeline
mRatBN7.2936,404,892 - 36,405,140 (-)MAPPERmRatBN7.2
Rnor_6.0938,027,045 - 38,027,292NCBIRnor6.0
Rnor_5.0937,711,410 - 37,711,657UniSTSRnor5.0
RGSC_v3.4932,926,585 - 32,926,832UniSTSRGSC3.4
Celera934,196,674 - 34,196,921UniSTS
RH 3.4 Map9344.9UniSTS
Cytogenetic Map9q21UniSTS
AI175602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,458,275 - 36,458,438 (-)MAPPERmRatBN7.2
Rnor_6.0937,973,354 - 37,973,516NCBIRnor6.0
Rnor_5.0937,657,719 - 37,657,881UniSTSRnor5.0
RGSC_v3.4932,979,964 - 32,980,126UniSTSRGSC3.4
Celera934,250,049 - 34,250,211UniSTS
RH 3.4 Map9338.09UniSTS
Cytogenetic Map9q21UniSTS
STS-Z40753  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0937,739,273 - 37,739,738NCBIRnor5.0
RGSC_v3.4932,898,504 - 32,898,968UniSTSRGSC3.4
Celera934,168,593 - 34,169,057UniSTS
Cytogenetic Map9q21UniSTS
fc48d10.y1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2936,279,774 - 36,280,241 (-)MAPPERmRatBN7.2
Rnor_6.0938,152,123 - 38,152,589NCBIRnor6.0
Rnor_5.0937,836,488 - 37,836,954UniSTSRnor5.0
RGSC_v3.4932,801,471 - 32,801,937UniSTSRGSC3.4
Celera934,071,562 - 34,072,028UniSTS
Cytogenetic Map9q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603831 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603838 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603839 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CB325745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000044452   ⟹   ENSRNOP00000043470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,732,022 - 44,025,533 (+)Ensembl
mRatBN7.2 Ensembl936,236,085 - 36,529,615 (+)Ensembl
Rnor_6.0 Ensembl937,902,303 - 38,196,273 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095264   ⟹   ENSRNOP00000082222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,725,958 - 44,025,533 (+)Ensembl
mRatBN7.2 Ensembl936,236,022 - 36,529,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000095842   ⟹   ENSRNOP00000091179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,837,729 - 44,025,533 (+)Ensembl
mRatBN7.2 Ensembl936,340,918 - 36,529,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096417   ⟹   ENSRNOP00000080301
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,631,517 - 44,025,533 (+)Ensembl
mRatBN7.2 Ensembl936,135,284 - 36,529,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101194   ⟹   ENSRNOP00000082905
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,725,958 - 44,025,533 (+)Ensembl
mRatBN7.2 Ensembl936,230,019 - 36,529,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102656   ⟹   ENSRNOP00000094042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,732,022 - 44,025,533 (+)Ensembl
mRatBN7.2 Ensembl936,236,085 - 36,529,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103786   ⟹   ENSRNOP00000096628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,876,044 - 43,900,558 (+)Ensembl
mRatBN7.2 Ensembl936,379,977 - 36,405,354 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112664   ⟹   ENSRNOP00000087471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,876,044 - 44,025,533 (+)Ensembl
mRatBN7.2 Ensembl936,379,977 - 36,529,615 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119100   ⟹   ENSRNOP00000077437
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl936,230,019 - 36,356,072 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000148443   ⟹   ENSRNOP00000103674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,631,517 - 44,025,533 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163385   ⟹   ENSRNOP00000099977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl943,837,729 - 44,025,533 (+)Ensembl
RefSeq Acc Id: NM_001108208   ⟹   NP_001101678
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,732,022 - 44,025,535 (+)NCBI
mRatBN7.2936,236,085 - 36,529,617 (+)NCBI
RefSeq Acc Id: XM_006244701   ⟹   XP_006244763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,836,293 - 44,025,535 (+)NCBI
mRatBN7.2936,340,334 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,091,326 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244713   ⟹   XP_006244775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244714   ⟹   XP_006244776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,044 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,196,244 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244716   ⟹   XP_006244778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,872,694 - 43,901,390 (+)NCBI
mRatBN7.2936,376,765 - 36,405,481 (+)NCBI
Rnor_6.0938,026,704 - 38,055,436 (-)NCBI
Rnor_5.0937,586,701 - 37,979,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766967   ⟹   XP_008765189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,770 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008766968   ⟹   XP_008765190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,833 - 44,025,535 (+)NCBI
mRatBN7.2936,236,157 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,196,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596770   ⟹   XP_017452259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596771   ⟹   XP_017452260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596772   ⟹   XP_017452261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596773   ⟹   XP_017452262
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596774   ⟹   XP_017452263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596775   ⟹   XP_017452264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596776   ⟹   XP_017452265
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596777   ⟹   XP_017452266
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596779   ⟹   XP_017452268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,725,512 - 44,025,535 (+)NCBI
mRatBN7.2936,229,876 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,202,167 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596780   ⟹   XP_017452269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,680 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596781   ⟹   XP_017452270
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,045 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,196,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596783   ⟹   XP_017452272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,047 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,196,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596784   ⟹   XP_017452273
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,689 - 36,528,566 (+)NCBI
Rnor_6.0937,902,336 - 38,296,819 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596785   ⟹   XP_017452274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017596786   ⟹   XP_017452275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,681 - 36,529,617 (+)NCBI
Rnor_6.0937,902,336 - 38,296,961 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039083554   ⟹   XP_038939482
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,689 - 36,529,617 (+)NCBI
RefSeq Acc Id: XM_039083555   ⟹   XP_038939483
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
mRatBN7.2936,135,689 - 36,528,566 (+)NCBI
RefSeq Acc Id: XM_039083556   ⟹   XP_038939484
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,833 - 44,025,535 (+)NCBI
mRatBN7.2936,236,157 - 36,528,566 (+)NCBI
RefSeq Acc Id: XM_039083558   ⟹   XP_038939486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,045 - 44,025,535 (+)NCBI
mRatBN7.2936,236,147 - 36,529,617 (+)NCBI
RefSeq Acc Id: XM_063267132   ⟹   XP_063123202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267134   ⟹   XP_063123204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267135   ⟹   XP_063123205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,725,512 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267136   ⟹   XP_063123206
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,731,046 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267138   ⟹   XP_063123208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,631,716 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267139   ⟹   XP_063123209
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,837,426 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267140   ⟹   XP_063123210
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,725,512 - 44,025,535 (+)NCBI
RefSeq Acc Id: XM_063267142   ⟹   XP_063123212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8943,872,747 - 44,025,535 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101678 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244763 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244775 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244776 (Get FASTA)   NCBI Sequence Viewer  
  XP_006244778 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765189 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765190 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452259 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452260 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452261 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452262 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452263 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452264 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452265 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452266 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452268 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452269 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452270 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452272 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452273 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452274 (Get FASTA)   NCBI Sequence Viewer  
  XP_017452275 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939482 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939483 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939484 (Get FASTA)   NCBI Sequence Viewer  
  XP_038939486 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123202 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123204 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123205 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123206 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123208 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123209 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123210 (Get FASTA)   NCBI Sequence Viewer  
  XP_063123212 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99312 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000043470
  ENSRNOP00000043470.6
  ENSRNOP00000080301
  ENSRNOP00000080301.1
  ENSRNOP00000082222.2
  ENSRNOP00000082905
  ENSRNOP00000082905.2
  ENSRNOP00000087471.1
  ENSRNOP00000091179
  ENSRNOP00000091179.1
  ENSRNOP00000094042
  ENSRNOP00000094042.1
  ENSRNOP00000096628
  ENSRNOP00000096628.1
  ENSRNOP00000099977
  ENSRNOP00000099977.1
  ENSRNOP00000103674
  ENSRNOP00000103674.1
RefSeq Acc Id: XP_006244775   ⟸   XM_006244713
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244776   ⟸   XM_006244714
- Peptide Label: isoform X28
- UniProtKB: A0A8I6AN06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244763   ⟸   XM_006244701
- Peptide Label: isoform X11
- UniProtKB: A0A8I5ZUJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244778   ⟸   XM_006244716
- Peptide Label: isoform X33
- UniProtKB: A0A8I6B4H4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765189   ⟸   XM_008766967
- Peptide Label: isoform X22
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765190   ⟸   XM_008766968
- Peptide Label: isoform X26
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452275   ⟸   XM_017596786
- Peptide Label: isoform X32
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452274   ⟸   XM_017596785
- Peptide Label: isoform X31
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452261   ⟸   XM_017596772
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452269   ⟸   XM_017596780
- Peptide Label: isoform X14
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452266   ⟸   XM_017596777
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452263   ⟸   XM_017596774
- Peptide Label: isoform X5
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452260   ⟸   XM_017596771
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452265   ⟸   XM_017596776
- Peptide Label: isoform X9
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452262   ⟸   XM_017596773
- Peptide Label: isoform X4
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452264   ⟸   XM_017596775
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452259   ⟸   XM_017596770
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452273   ⟸   XM_017596784
- Peptide Label: isoform X24
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452268   ⟸   XM_017596779
- Peptide Label: isoform X13
- UniProtKB: D3ZC56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452272   ⟸   XM_017596783
- Peptide Label: isoform X18
- UniProtKB: D3ZC56 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452270   ⟸   XM_017596781
- Peptide Label: isoform X16
- UniProtKB: D3ZC56 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000043470   ⟸   ENSRNOT00000044452
RefSeq Acc Id: XP_038939482   ⟸   XM_039083554
- Peptide Label: isoform X19
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939483   ⟸   XM_039083555
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001101678   ⟸   NM_001108208
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939486   ⟸   XM_039083558
- Peptide Label: isoform X29
- UniProtKB: D3ZC56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939484   ⟸   XM_039083556
- Peptide Label: isoform X27
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096628   ⟸   ENSRNOT00000103786
Ensembl Acc Id: ENSRNOP00000091179   ⟸   ENSRNOT00000095842
Ensembl Acc Id: ENSRNOP00000080301   ⟸   ENSRNOT00000096417
Ensembl Acc Id: ENSRNOP00000087471   ⟸   ENSRNOT00000112664
Ensembl Acc Id: ENSRNOP00000094042   ⟸   ENSRNOT00000102656
Ensembl Acc Id: ENSRNOP00000082222   ⟸   ENSRNOT00000095264
Ensembl Acc Id: ENSRNOP00000082905   ⟸   ENSRNOT00000101194
Ensembl Acc Id: ENSRNOP00000077437   ⟸   ENSRNOT00000119100
RefSeq Acc Id: XP_063123202   ⟸   XM_063267132
- Peptide Label: isoform X8
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123204   ⟸   XM_063267134
- Peptide Label: isoform X10
- UniProtKB: A0A8I5ZQD4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123208   ⟸   XM_063267138
- Peptide Label: isoform X21
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123205   ⟸   XM_063267135
- Peptide Label: isoform X15
- UniProtKB: D3ZC56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123210   ⟸   XM_063267140
- Peptide Label: isoform X25
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123206   ⟸   XM_063267136
- Peptide Label: isoform X17
- UniProtKB: D3ZC56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123209   ⟸   XM_063267139
- Peptide Label: isoform X23
- UniProtKB: A0A8I6ABJ6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123212   ⟸   XM_063267142
- Peptide Label: isoform X30
- UniProtKB: A0A8I5ZUE5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103674   ⟸   ENSRNOT00000148443
Ensembl Acc Id: ENSRNOP00000099977   ⟸   ENSRNOT00000163385
Protein Domains
Calponin-homology (CH)   EF-hand   GAR   SH3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306566 AgrOrtholog
BioCyc Gene G2FUF-27870 BioCyc
Ensembl Genes ENSRNOG00000012207 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044452 ENTREZGENE
  ENSRNOT00000044452.8 UniProtKB/TrEMBL
  ENSRNOT00000095264.2 UniProtKB/TrEMBL
  ENSRNOT00000095842 ENTREZGENE
  ENSRNOT00000095842.2 UniProtKB/TrEMBL
  ENSRNOT00000096417 ENTREZGENE
  ENSRNOT00000096417.2 UniProtKB/TrEMBL
  ENSRNOT00000101194 ENTREZGENE
  ENSRNOT00000101194.2 UniProtKB/TrEMBL
  ENSRNOT00000102656 ENTREZGENE
  ENSRNOT00000102656.2 UniProtKB/TrEMBL
  ENSRNOT00000103786 ENTREZGENE
  ENSRNOT00000103786.2 UniProtKB/TrEMBL
  ENSRNOT00000112664.2 UniProtKB/TrEMBL
  ENSRNOT00000148443 ENTREZGENE
  ENSRNOT00000148443.1 UniProtKB/TrEMBL
  ENSRNOT00000163385 ENTREZGENE
  ENSRNOT00000163385.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  1.20.5.170 UniProtKB/TrEMBL
  1.20.58.1060 UniProtKB/TrEMBL
  1.20.58.60 UniProtKB/TrEMBL
  3.30.160.780 UniProtKB/TrEMBL
  3.30.920.20 UniProtKB/TrEMBL
  3.90.1290.10 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro Actinin_actin-bd_CS UniProtKB/TrEMBL
  Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  Desmoplakin_SH3 UniProtKB/TrEMBL
  Desmoplakin_Spectrin_like UniProtKB/TrEMBL
  EF-hand-like_dom UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_Ca-bd UniProtKB/TrEMBL
  GAR_dom_sf UniProtKB/TrEMBL
  GAS2_dom UniProtKB/TrEMBL
  PCN-like_spectrin-like_rpt UniProtKB/TrEMBL
  Plakin UniProtKB/TrEMBL
  Plakin_repeat_sf UniProtKB/TrEMBL
  Plectin_repeat UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Spectrin/alpha-actinin UniProtKB/TrEMBL
  Spectrin_repeat UniProtKB/TrEMBL
NCBI Gene 316313 ENTREZGENE
PANTHER DYSTONIN UniProtKB/TrEMBL
  PTHR23169 UniProtKB/TrEMBL
  SHORT STOP, ISOFORM H UniProtKB/TrEMBL
Pfam EF_hand_5 UniProtKB/TrEMBL
  GAS2 UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
  Plectin UniProtKB/TrEMBL
  SH3_10 UniProtKB/TrEMBL
  Spectrin UniProtKB/TrEMBL
  Spectrin_3 UniProtKB/TrEMBL
  Spectrin_4 UniProtKB/TrEMBL
  Spectrin_like UniProtKB/TrEMBL
  SR_plectin_7 UniProtKB/TrEMBL
PhenoGen Dst PhenoGen
PROSITE ACTININ_1 UniProtKB/TrEMBL
  ACTININ_2 UniProtKB/TrEMBL
  EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  GAR UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012207 RatGTEx
SMART EFh UniProtKB/TrEMBL
  GAS2 UniProtKB/TrEMBL
  PLEC UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
  SPEC UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  Spectrin repeat UniProtKB/TrEMBL
  SSF143575 UniProtKB/TrEMBL
  SSF47473 UniProtKB/TrEMBL
  SSF75399 UniProtKB/TrEMBL
UniProt A0A8I5ZQD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUE5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZUJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A816_RAT UniProtKB/TrEMBL
  A0A8I6ABJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AN06 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B4H4 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L6P3_RAT UniProtKB/TrEMBL
  A0ABK0LDQ5_RAT UniProtKB/TrEMBL
  D3ZC56 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Dst  dystonin   Dst_predicted  dystonin (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Dst_predicted  dystonin (predicted)      Symbol and Name status set to approved 70820 APPROVED