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Gene: Scara5 (scavenger receptor class A, member 5) Rattus norvegicus

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Symbol:

Scara5

Name:

scavenger receptor class A, member 5

RGD ID:

1306539

Description:

Predicted to enable ferritin receptor activity. Predicted to be involved in several processes, including intracellular iron ion homeostasis; iron ion transmembrane transport; and protein homotrimerization. Predicted to act upstream of or within cellular response to heat. Predicted to be located in cell surface and plasma membrane. Orthologous to human SCARA5 (scavenger receptor class A member 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305974; RGD1306539; scavenger receptor class A member 5; scavenger receptor class A, member 5 (putative); similar to RIKEN cDNA 4933425F03

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	44,055,576 - 44,160,593 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	44,055,630 - 44,160,585 (+)	Ensembl				GRCr8
mRatBN7.2	15	39,880,017 - 39,985,007 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	39,880,035 - 39,983,373 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	41,744,215 - 41,849,282 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	42,894,412 - 42,999,482 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	41,340,405 - 41,445,347 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	49,069,142 - 49,177,159 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	49,069,145 - 49,177,166 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	52,807,988 - 52,912,488 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	45,083,644 - 45,189,211 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	39,553,541 - 39,658,427 (+)	NCBI		Celera
RGSC_v3.1	15	45,112,218 - 45,202,970 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP,ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

deoxynivalenol (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

diclofenac (ISO)

diethyl phthalate (ISO)

diiodine (ISO)

diisobutyl phthalate (ISO)

diisononyl phthalate (ISO)

dioxygen (EXP)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

Erionite (ISO)

ferric oxide (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glycidol (EXP)

hexane-1,6-diamine (ISO)

indometacin (ISO)

isoprenaline (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

methapyrilene (EXP,ISO)

methimazole (EXP)

N-methyl-4-phenylpyridinium (EXP)

N-nitrosodiethylamine (ISO)

nitrofen (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

streptozocin (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

tamoxifen (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

tributylstannane (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to heat (ISO)

endocytosis (IBA,IEA,ISO)

intracellular iron ion homeostasis (IBA,IEA,ISO)

iron ion transmembrane transport (IEA,ISO)

iron ion transport (IEA)

monoatomic ion transport (IEA)

protein homotrimerization (IEA,ISO)

Cellular Component

cell surface (IEA,ISO)

membrane (IEA)

plasma membrane (IBA,IEA,ISO)

Molecular Function

ferritin receptor activity (IBA,IEA,ISO)

protein binding (ISO)

scavenger receptor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16407294	PMID:18755693	PMID:19154717	PMID:21810271

Genomics

Comparative Map Data

Scara5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	44,055,576 - 44,160,593 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	15	44,055,630 - 44,160,585 (+)	Ensembl				GRCr8
mRatBN7.2	15	39,880,017 - 39,985,007 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	39,880,035 - 39,983,373 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	15	41,744,215 - 41,849,282 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	42,894,412 - 42,999,482 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	41,340,405 - 41,445,347 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	49,069,142 - 49,177,159 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	49,069,145 - 49,177,166 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	15	52,807,988 - 52,912,488 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	15	45,083,644 - 45,189,211 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	15	39,553,541 - 39,658,427 (+)	NCBI		Celera
RGSC_v3.1	15	45,112,218 - 45,202,970 (+)	NCBI
Cytogenetic Map	15	p12	NCBI

SCARA5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	27,869,883 - 27,992,673 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	27,869,883 - 27,992,834 (-)	Ensembl			hg38	GRCh38
GRCh37	8	27,727,400 - 27,850,190 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	27,783,655 - 27,906,117 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	26,687,547 - 26,810,041 (-)	NCBI		Celera
Cytogenetic Map	8	p21.1	NCBI
HuRef	8	26,272,203 - 26,395,878 (-)	NCBI		HuRef
CHM1_1	8	27,929,218 - 28,052,486 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	28,147,213 - 28,270,893 (-)	NCBI		T2T-CHM13v2.0

Scara5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	65,903,852 - 66,002,275 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	65,903,852 - 66,002,275 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	14	65,666,403 - 65,764,826 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	65,666,403 - 65,764,826 (+)	Ensembl			mm10	GRCm38
MGSCv37	14	66,285,240 - 66,383,663 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	14	64,620,537 - 64,718,936 (+)	NCBI		MGSCv36	mm8
Celera	14	63,417,881 - 63,517,650 (+)	NCBI		Celera
Cytogenetic Map	14	D1	NCBI
cM Map	14	34.35	NCBI

Scara5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	50,386,125 - 50,486,361 (-)	Ensembl
ChiLan1.0	NW_004955403	50,386,212 - 50,486,335 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCARA5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	46,404,842 - 46,532,377 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	22,119,139 - 22,246,707 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	27,143,737 - 27,271,301 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	24,345,260 - 24,469,881 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	24,345,260 - 24,469,881 (-)	Ensembl			panPan2	panpan1.1

SCARA5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	29,591,248 - 29,714,159 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	29,591,294 - 29,712,173 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	30,244,446 - 30,367,343 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	29,783,775 - 29,905,783 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	29,783,862 - 29,905,760 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	29,713,016 - 29,835,700 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	29,594,206 - 29,717,140 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	29,760,500 - 29,883,455 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Scara5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	7,718,073 - 7,794,248 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936675	765,378 - 863,843 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936675	763,467 - 868,021 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCARA5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	14	11,615,629 - 11,747,336 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	12,845,888 - 12,978,031 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCARA5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	25,975,310 - 26,097,312 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	25,975,122 - 26,097,102 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666052	16,040,831 - 16,162,861 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scara5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624758	22,663,129 - 22,753,776 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624758	22,661,136 - 22,757,578 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Scara5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	12	58,686,988 - 58,783,442 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Scara5
294 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	61
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000019487
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1641913	Colcr2	Colorectal carcinoma resistance QTL 2	6.57	0.0197	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	15	2315759	47315759	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	44836456	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2315759	53331089	Rat
152025253	Hrtrt24	Heart rate QTL 24	3.82		heart pumping trait (VT:2000009)		15	31855803	92671517	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	28527732	73527732	Rat
1582227	Gluco30	Glucose level QTL 30	3.6	0.0003	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	15	43677244	88677244	Rat
1582228	Epfw3	Epididymal fat weight QTL 3	4.1	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	25285835	104695021	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	22336351	52597086	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	25285835	104695021	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	19155762	87086765	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	2785923	47785923	Rat
1598828	Glom14	Glomerulus QTL 14	2.5		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	15	40463152	85463152	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	14926594	71614418	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	22336351	67336351	Rat
1582242	Gluco28	Glucose level QTL 28	3.3	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	15	43677244	88677244	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	25285835	104695021	Rat
1582244	Bw79	Body weight QTL 79	4	0.0002	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	15	43677244	88677244	Rat
1582214	Stl21	Serum triglyceride level QTL 21	3.1	0.022	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	15	43677244	88677244	Rat

Markers in Region

D15Rat120

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	44,094,824 - 44,094,935 (+)	Marker Load Pipeline
mRatBN7.2	15	39,919,237 - 39,919,348 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	49,111,041 - 49,111,151	NCBI	Rnor6.0
Rnor_5.0	15	52,847,018 - 52,847,128	UniSTS	Rnor5.0
RGSC_v3.4	15	45,124,534 - 45,124,641	RGD	RGSC3.4
RGSC_v3.4	15	45,124,531 - 45,124,641	UniSTS	RGSC3.4
Celera	15	39,592,707 - 39,592,817	UniSTS
RGSC_v3.1	15	45,140,234 - 45,140,341	RGD
SHRSP x BN Map	15	33.4699	UniSTS
SHRSP x BN Map	15	33.4699	RGD
Cytogenetic Map	15	p12	UniSTS

D15Rat143

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	44,065,351 - 44,065,492 (+)	Marker Load Pipeline
mRatBN7.2	15	39,889,760 - 39,889,901 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	49,081,619 - 49,081,759	NCBI	Rnor6.0
Rnor_5.0	15	52,817,596 - 52,817,736	UniSTS	Rnor5.0
RGSC_v3.4	15	45,094,621 - 45,094,762	RGD	RGSC3.4
RGSC_v3.4	15	45,094,622 - 45,094,762	UniSTS	RGSC3.4
Celera	15	39,563,249 - 39,563,391	UniSTS
RGSC_v3.1	15	45,110,321 - 45,110,462	RGD
RH 2.0 Map	15	275.0	RGD
SHRSP x BN Map	15	33.4699	RGD
Cytogenetic Map	15	p12	UniSTS

D15Got47

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	15	44,094,762 - 44,094,922 (+)	Marker Load Pipeline
mRatBN7.2	15	39,919,175 - 39,919,335 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	49,110,979 - 49,111,138	NCBI	Rnor6.0
Rnor_5.0	15	52,846,956 - 52,847,115	UniSTS	Rnor5.0
RGSC_v3.4	15	45,124,468 - 45,124,628	RGD	RGSC3.4
RGSC_v3.4	15	45,124,469 - 45,124,628	UniSTS	RGSC3.4
Celera	15	39,592,645 - 39,592,804	UniSTS
RGSC_v3.1	15	45,140,168 - 45,140,328	RGD
RH 2.0 Map	15	277.2	RGD
Cytogenetic Map	15	p12	UniSTS

30.MMHAP14FRB12.seq

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	39,976,244 - 39,976,352 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	49,168,397 - 49,168,504	NCBI	Rnor6.0
Rnor_5.0	15	52,903,726 - 52,903,833	UniSTS	Rnor5.0
RGSC_v3.4	15	45,180,449 - 45,180,556	UniSTS	RGSC3.4
Celera	15	39,649,665 - 39,649,772	UniSTS
Cytogenetic Map	15	p12	UniSTS

RH139634

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	39,984,637 - 39,984,817 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	49,176,790 - 49,176,969	NCBI	Rnor6.0
Rnor_5.0	15	52,912,119 - 52,912,298	UniSTS	Rnor5.0
RGSC_v3.4	15	45,188,842 - 45,189,021	UniSTS	RGSC3.4
Celera	15	39,658,058 - 39,658,237	UniSTS
Cytogenetic Map	15	p12	UniSTS

RH138852

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	39,966,812 - 39,967,027 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	49,158,965 - 49,159,179	NCBI	Rnor6.0
Rnor_5.0	15	52,894,294 - 52,894,508	UniSTS	Rnor5.0
RGSC_v3.4	15	45,171,017 - 45,171,231	UniSTS	RGSC3.4
Celera	15	39,640,233 - 39,640,447	UniSTS
Cytogenetic Map	15	p12	UniSTS

UniSTS:478958

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	15	39,950,854 - 39,951,157 (+)	MAPPER	mRatBN7.2
Rnor_6.0	15	49,143,000 - 49,143,302	NCBI	Rnor6.0
Rnor_5.0	15	52,878,170 - 52,878,472	UniSTS	Rnor5.0
RGSC_v3.4	15	45,155,083 - 45,155,385	UniSTS	RGSC3.4
Celera	15	39,624,290 - 39,624,592	UniSTS
Cytogenetic Map	15	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	65	147	91	90	59	43	59	6	285	141	11	126	63	92	31	6	6

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001135855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431432	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006252204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000019487 ⟹ ENSRNOP00000019487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	44,055,630 - 44,160,585 (+)	Ensembl
mRatBN7.2 Ensembl	15	39,880,035 - 39,983,373 (+)	Ensembl
Rnor_6.0 Ensembl	15	49,069,145 - 49,177,166 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116802 ⟹ ENSRNOP00000077438

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	15	44,055,630 - 44,137,943 (+)	Ensembl
mRatBN7.2 Ensembl	15	39,880,035 - 39,962,357 (+)	Ensembl

RefSeq Acc Id:

NM_001135855 ⟹ NP_001129327

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	44,055,645 - 44,160,593 (+)	NCBI
mRatBN7.2	15	39,880,054 - 39,985,007 (+)	NCBI
Rnor_6.0	15	49,069,180 - 49,177,159 (+)	NCBI
Rnor_5.0	15	52,807,988 - 52,912,488 (+)	NCBI
RGSC_v3.4	15	45,083,644 - 45,189,211 (+)	RGD
Celera	15	39,553,541 - 39,658,427 (+)	RGD

Sequence:

show sequence

TGCGGATGACTCCACAGACTGTCTCCGGATCGCTTTCTGACGCTGGCCGACGCTGCACCAAGGC
AGGGAGTCCCACGTGCAGACCCGTCATTCAGCCACCTTGTTGAACTGATCCTCCCATAGAAGTG
ACTGTGGTCCTGACCTAAGTCCCTAGGTGACCCTGAAGCCTCTTTCTATATGACTCCATCTGGA
TTTGACTGGCTGTGGGGACAAGCTTCAAGGGACTTTCTGGGTGAAGGGACTTTGTGAGGCAGCA
GTCGGCTCTCTGGCTACCATGGCAATCGCTGGGAACTGAAAGGACAGGGTCCAGCTTCAGCACG
GGGCATACAGGCTATGATGGACAACAAAGCCATGTACCTGCATACTGTGAGTGACCGTGACAAC
GGCTCCATCTTTGAGGAACCCTTTGATGGCAGGAGCCTGTCCAAACTGAACCTGTGTGAGGATG
GTCCATGTCACAAGCGGCGGGCGGGTGGCTGCTGCACACAGCTGGGCTCCCTGTCAGCGCTGAA
GCATGCGGTCCTGGGGCTGTATCTTCTGGTCTTCCTGACTCTTGTGGGTGTCTTCATCTTAGCA
GTGTCCCGGCCTCGCAGCTCCCCAGATGACTTGAAGGCGCTGACTAGGAACATCAACCGGCTGA
ATGAAAGCTTCCGGGACATGCAGCTACGGCTGCTGCAGGCTCCGTTGCAGGCAGACCTGACGGA
ACAGGTGTGGAAGGTTCAGGATGCACTGCAGAACCAGACAGACTCACTGTTGGCCCTGGCAGGC
TTGGTGCAGAGACTGGAGGGCACACTGTGGGGGCTGCACGCGCAGGCTGCACAGACTGAGCAGG
CGGTGGCCCTGCTGCGTGACCGAACAGGACAGCAGAGCGACTCCGCACAGCTGGAACTCTACCA
GTTGCAGGTGGAAAGCAATCGAAGCCAGCTGCTGCTGCAGCGGCACGCAGGCCTGCTGGATGGG
CTAGCACACAGGGTGGGGGTCCTGGGCGAGGAGCTGGCTGATGTGGGTGGTGCACTTCGTGGCC
TCAACCACAGCCTATCCTATGACGTGGCTCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCT
GGTGAGCAATGCCAGCGCAGACACACGCCGTATGAGGCTGGTGCACATGGACATGGAGATGCAA
CTCAAGCAGGAGCTGGCCACACTCAATGTGGTGACTGAGGACCTGCGTCTGAAGGACTGGGAGC
ACTCCATCGCCCTGAGGAACATCACCCTTGCCAAAGGACCACCAGGACCCAAAGGTGACCAAGG
GAATGAAGGGAAGGAGGGAAAGCCAGGTAGCCCTGGACTTCCTGGATCTCGAGGTCTGCCAGGA
GAGAGAGGTGACCCAGGAATGCCTGGTCCTAAGGGTGATGATGGGAAGCTAGGAGCCACAGGTC
CCATGGGCATGCGCGGATTCAAAGGTGAGAGAGGCCCAAAGGGAGAGAAAGGAGAAAGAGGAGA
GAGAGCTGGTGATATGGATTTCACAATGATTCGCCTGGTGAATGGCTCTGGCCCACACCAGGGC
CGGGTGGAGGTATTCCACGATCGTCGCTGGGGCACAGTGTGTGATGACGGCTGGGACAAGAAGG
ATGGGGACGTGGTGTGCCGCATGCTGGGCTTCCACAGTGTGGAGGAGGTGCACCGGACAGCTCG
TTTTGGGCAAGGCACAGGGAGGATCTGGATGGATGATGTGAACTGCAAGGGAACTGAGAGCTCC
ATCTTCCACTGCCAGTTCTCCAAATGGGGCGTGACAAATTGTGGGCATGCTGAGGACGCTGGAG
TGACTTGTACTGCCCTCTGAAAGTGGCCACAGCCCAAGGCTAGGGCACTGCCTCAGAGCCACAT
TCCTGTGTCTCTGGGGTAGGGGGAATTGCTTGGAGCCACCTAGCCATGGCTCGTGCCCAATCCA
ACACCACCCTACCCTTGCTGCCAATTGGCCATACTCTGGTTCCAAGGTGACCTGGTGTCACTCT
CTTTGCAGACAACTGCTCCAACGTGCTCGTGGGACCTACATTCTGTCTTTCTCTTCCACCAAGG
TTTCTACATGGGGAGCCCCAGTCAATTGAACCAGCAGTGTGTTCAGTTATCTGAAGACGATTCA
TAAAGGCCTGGGGATCCATATTCTCTTTGGTCTCTTGGTTATGGATGGATGATGATATGATGTT
ATAGGCAAGAGCAGCAATGGAGGTGGGAGGTGTTATGGGTCATTTACTTTGCAGATAACTCCCC
AGCAAGTAGAAACCCTTAATGACTCTGTTTCCCCACTTTTACTCTGCCTCTTCACACTATATAT
TAGTTTGAGGAAGGGGCAGTGGAGAAGCCAGCTACGGAGGACACTTAAGAAAATGGCAGACACC
TGAAGAACCCAGCTGGAGCTGGAAAGGGAAGGGGAAAACTACCATGGTGTGTTACATCATATCT
TGGGTGCTGGAATCACTTATCCATATTGCTGTGTTCATAATACAAGGCATGTCCCTCGGGGCAG
GATCCTGCCTCTTGGGAGTGCTCACCTGACCTGCTCACCTGGCTTCCAAGTTAGAAGACCAAGA
ATGACCAAGACTGAAACCAGGCTCCCATATGAATCTTAGTCTGCTCCTGTTAGGCCTGAGCAAC
AAGCTTGGGCTATCGACATTGCTTATCAGAAGGTTGTATGCACCAAGTCCTCCAGCGAGCACAT
GTGAGATCAGACGTGATGGGCTTCTAAGTCAAGTGTACACACAGGAGGGTGATTTTAAAGTGTG
ACATGGGAGGTAGACACAGTAACCTGAGCCCATCAGTCATTAGAGACTGTGTCTTGGGGTCGTT
GATGACAGTGTACCTTCCAGGCCTCTCTAAATAGAATCTTGTGATCCAAAGAATGCAATCCTGA
TAAGCCCCAAAAGGATAGAAAGTATGAAATTCTATAACCTTCCCATGGGAAATGAAAGCCCTTA
CGACTCTTCAAGCCTGTGAGCTTCACTTCCCTCCTGTGTACAAAGAGAGCATCATCTGTTCTTG
ACCCAAGGAGGAGGTGAACTAGATTGTGCATGTGTTCTAGAACTGGGGGAGGTATACAGGGCAG
CAACTGAGTGTAGACCTGTCTGTAGATAGTAGAGTCCCAGACACAATCACATATCCTGTGAGGT
GAGCACTGTCCTGCTCTGGGTCATGAAGACCTAGGTACCCCCAGGTGTAGTTGCCCCAACGATC
CTGACTGGCTGCTCAGCCAATATGTGATCTTGGTCATTCTTGCTTGCAATATGTGTTACTCACT
ACTGTTCTCATGATATGACCAACTGTTATGTTTACATAACATGCATGTACTCATGCATCTTCTT
GCAGAGCAAATGTATGTATACCTGTATAAGAGGAGCACTCCTATTACATTGTTCAGCACGTCAC
GATGGTTATGTTTTTAAAAGATATGCTAGAGGCTATGTTTTTTTAAGGTATTTTTTTAAAAGTG
CCTAAACATCACTTTGAGAATTGTGGGAAAGAATCCATTTACCCCAATGATGAAGACTCAGTCA
CTTTCTCACTTGGTCTTTACATGGAAGAAACACACGTTTGGTTTTATGTCTATAAAAGCAATGT
TGAAAAGTATTTTACCCATAAAAATAAAAGTCGACTAGTTTACAAACCTACCTATGAGGGCGTG
GAAACGACCATGGCCTGTATTTCAGGGACTAATGGAAACTAGGCCTAAAATACTTCAGATGTTT
TGTAAGAAAGACTCTCAATAAAGCAGACATTTGAAATAGAT

hide sequence

RefSeq Acc Id:

XM_006252204 ⟹ XP_006252266

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	44,055,576 - 44,160,592 (+)	NCBI
mRatBN7.2	15	39,880,017 - 39,985,006 (+)	NCBI
Rnor_6.0	15	49,069,142 - 49,177,158 (+)	NCBI
Rnor_5.0	15	52,807,988 - 52,912,488 (+)	NCBI

Sequence:

show sequence

GTTGGAGCACCTCCCACCCAGTCAGTACCTAGCAGAGCTGCGGATGACTCCACAGACTGTCTCC
GGATCGCTTTCTGACGCTGGCCGACGCTGCACCAAGGCAGGGAGTCCCACGTGCAGACCCGTCA
TTCAGCCACCTTGTTGAACTGATCCTCCCATAGAAGTGACTGTGGTCCTGACCTAAGTCCCTAG
GTGACCCTGAAGCCTCTTTCTATATGACTCCATCTGGATTTGACTGGCTGTGGGGACAAGCTTC
AAGGGACTTTCTGGGTGAAGGGACTTTGTGAGGCAGCAGTCGGCTCTCTGGCTACCATGGCAAT
CGCTGGGAACTGAAAGGACAGGGTCCAGCTTCAGCACGGGGCATACAGGCTATGATGGACAACA
AAGCCATGTACCTGCATACTGTGAGTGACCGTGACAACGGCTCCATCTTTGAGGAACCCTTTGA
TGGCAGGAGCCTGTCCAAACTGAACCTGTGTGAGGATGGTCCATGTCACAAGCGGCGGGCGGGT
GGCTGCTGCACACAGCTGGGCTCCCTGTCAGCGCTGAAGCATGCGGTCCTGGGGCTGTATCTTC
TGGTCTTCCTGACTCTTGTGGGTGTCTTCATCTTAGCAGTGTCCCGGCCTCGCAGCTCCCCAGA
TGACTTGAAGGCGCTGACTAGGAACATCAACCGGCTGAATGAAAGCTTCCGGGACATGCAGCTA
CGGCTGCTGCAGGCTCCGTTGCAGGCAGACCTGACGGAACAGGTGTGGAAGGTTCAGGATGCAC
TGCAGAACCAGACAGACTCACTGTTGGCCCTGGCAGGCTTGGTGCAGAGACTGGAGGGCACACT
GTGGGGGCTGCACGCGCAGGCTGCACAGACTGAGCAGGCGGTGGCCCTGCTGCGTGACCGAACA
GGACAGCAGAGCGACTCCGCACAGCTGGAACTCTACCAGTTGCAGGTGGAAAGCAATCGAAGCC
AGCTGCTGCTGCAGCGGCACGCAGGCCTGCTGGATGGGCTAGCACACAGGGTGGGGGTCCTGGG
CGAGGAGCTGGCTGATGTGGGTGGTGCACTTCGTGGCCTCAACCACAGCCTATCCTATGACGTG
GCTCTGCACAGCACGTGGCTACAGGACCTGCAGGTGCTGGTGAGCAATGCCAGCGCAGACACAC
GCCGTATGAGGCTGGTGCACATGGACATGGAGATGCAACTCAAGCAGGAGCTGGCCACACTCAA
TGTGGTGACTGAGGACCTGCGTCTGAAGGACTGGGAGCACTCCATCGCCCTGAGGAACATCACC
CTTGCCAAAGGACCACCAGGACCCAAAGGTGACCAAGGGAATGAAGGGAAGGAGGGAAAGCCAG
GTAGCCCTGGACTTCCTGGATCTCGAGGTCTGCCAGGAGAGAGAGGTGACCCAGGAATGCCTGG
TCCTAAGGGTGATGATGGGAAGCTAGGAGCCACAGGTCCCATGGGCATGCGCGGATTCAAAGGT
GAGAGAGGCCCAAAGGGAGAGAAAGGAGAAAGAGGAGAGAGAGCTGCAGGTGATATGGATTTCA
CAATGATTCGCCTGGTGAATGGCTCTGGCCCACACCAGGGCCGGGTGGAGGTATTCCACGATCG
TCGCTGGGGCACAGTGTGTGATGACGGCTGGGACAAGAAGGATGGGGACGTGGTGTGCCGCATG
CTGGGCTTCCACAGTGTGGAGGAGGTGCACCGGACAGCTCGTTTTGGGCAAGGCACAGGGAGGA
TCTGGATGGATGATGTGAACTGCAAGGGAACTGAGAGCTCCATCTTCCACTGCCAGTTCTCCAA
ATGGGGCGTGACAAATTGTGGGCATGCTGAGGACGCTGGAGTGACTTGTACTGCCCTCTGAAAG
TGGCCACAGCCCAAGGCTAGGGCACTGCCTCAGAGCCACATTCCTGTGTCTCTGGGGTAGGGGG
AATTGCTTGGAGCCACCTAGCCATGGCTCGTGCCCAATCCAACACCACCCTACCCTTGCTGCCA
ATTGGCCATACTCTGGTTCCAAGGTGACCTGGTGTCACTCTCTTTGCAGACAACTGCTCCAACG
TGCTCGTGGGACCTACATTCTGTCTTTCTCTTCCACCAAGGTTTCTACATGGGGAGCCCCAGTC
AATTGAACCAGCAGTGTGTTCAGTTATCTGAAGACGATTCATAAAGGCCTGGGGATCCATATTC
TCTTTGGTCTCTTGGTTATGGATGGATGATGATATGATGTTATAGGCAAGAGCAGCAATGGAGG
TGGGAGGTGTTATGGGTCATTTACTTTGCAGATAACTCCCCAGCAAGTAGAAACCCTTAATGAC
TCTGTTTCCCCACTTTTACTCTGCCTCTTCACACTATATATTAGTTTGAGGAAGGGGCAGTGGA
GAAGCCAGCTACGGAGGACACTTAAGAAAATGGCAGACACCTGAAGAACCCAGCTGGAGCTGGA
AAGGGAAGGGGAAAACTACCATGGTGTGTTACATCATATCTTGGGTGCTGGAATCACTTATCCA
TATTGCTGTGTTCATAATACAAGGCATGTCCCTCGGGGCAGGATCCTGCCTCTTGGGAGTGCTC
ACCTGACCTGCTCACCTGGCTTCCAAGTTAGAAGACCAAGAATGACCAAGACTGAAACCAGGCT
CCCATATGAATCTTAGTCTGCTCCTGTTAGGCCTGAGCAACAAGCTTGGGCTATCGACATTGCT
TATCAGAAGGTTGTATGCACCAAGTCCTCCAGCGAGCACATGTGAGATCAGACGTGATGGGCTT
CTAAGTCAAGTGTACACACAGGAGGGTGATTTTAAAGTGTGACATGGGAGGTAGACACAGTAAC
CTGAGCCCATCAGTCATTAGAGACTGTGTCTTGGGGTCGTTGATGACAGTGTACCTTCCAGGCC
TCTCTAAATAGAATCTTGTGATCCAAAGAATGCAATCCTGATAAGCCCCAAAAGGATAGAAAGT
ATGAAATTCTATAACCTTCCCATGGGAAATGAAAGCCCTTACGACTCTTCAAGCCTGTGAGCTT
CACTTCCCTCCTGTGTACAAAGAGAGCATCATCTGTTCTTGACCCAAGGAGGAGGTGAACTAGA
TTGTGCATGTGTTCTAGAACTGGGGGAGGTATACAGGGCAGCAACTGAGTGTAGACCTGTCTGT
AGATAGTAGAGTCCCAGACACAATCACATATCCTGTGAGGTGAGCACTGTCCTGCTCTGGGTCA
TGAAGACCTAGGTACCCCCAGGTGTAGTTGCCCCAACGATCCTGACTGGCTGCTCAGCCAATAT
GTGATCTTGGTCATTCTTGCTTGCAATATGTGTTACTCACTACTGTTCTCATGATATGACCAAC
TGTTATGTTTACATAACATGCATGTACTCATGCATCTTCTTGCAGAGCAAATGTATGTATACCT
GTATAAGAGGAGCACTCCTATTACATTGTTCAGCACGTCACGATGGTTATGTTTTTAAAAGATA
TGCTAGAGGCTATGTTTTTTTAAGGTATTTTTTTAAAAGTGCCTAAACATCACTTTGAGAATTG
TGGGAAAGAATCCATTTACCCCAATGATGAAGACTCAGTCACTTTCTCACTTGGTCTTTACATG
GAAGAAACACACGTTTGGTTTTATGTCTATAAAAGCAATGTTGAAAAGTATTTTACCCATAAAA
ATAAAAGTCGACTAGTTTACAAACCTACCTATGAGGGCGTGGAAACGACCATGGCCTGTATTTC
AGGGACTAATGGAAACTAGGCCTAAAATACTTCAGATGTTTTGTAAGAAAGACTCTCAATAAAG
CAGACATTTGAAATAGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001129327	(Get FASTA)	NCBI Sequence Viewer
	NP_001418361	(Get FASTA)	NCBI Sequence Viewer
	XP_006252266	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL85362	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000019487
	ENSRNOP00000019487.5
	ENSRNOP00000077438.2

RefSeq Acc Id:

NP_001129327 ⟸ NM_001135855

- UniProtKB:

A6K6K2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMDNKAMYLHTVSDRDNGSIFEEPFDGRSLSKLNLCEDGPCHKRRAGGCCTQLGSLSALKHAVL
GLYLLVFLTLVGVFILAVSRPRSSPDDLKALTRNINRLNESFRDMQLRLLQAPLQADLTEQVWK
VQDALQNQTDSLLALAGLVQRLEGTLWGLHAQAAQTEQAVALLRDRTGQQSDSAQLELYQLQVE
SNRSQLLLQRHAGLLDGLAHRVGVLGEELADVGGALRGLNHSLSYDVALHSTWLQDLQVLVSNA
SADTRRMRLVHMDMEMQLKQELATLNVVTEDLRLKDWEHSIALRNITLAKGPPGPKGDQGNEGK
EGKPGSPGLPGSRGLPGERGDPGMPGPKGDDGKLGATGPMGMRGFKGERGPKGEKGERGERAGD
MDFTMIRLVNGSGPHQGRVEVFHDRRWGTVCDDGWDKKDGDVVCRMLGFHSVEEVHRTARFGQG
TGRIWMDDVNCKGTESSIFHCQFSKWGVTNCGHAEDAGVTCTAL

hide sequence

RefSeq Acc Id:

XP_006252266 ⟸ XM_006252204

- Peptide Label:

isoform X1

- Sequence:

show sequence

MMDNKAMYLHTVSDRDNGSIFEEPFDGRSLSKLNLCEDGPCHKRRAGGCCTQLGSLSALKHAVL
GLYLLVFLTLVGVFILAVSRPRSSPDDLKALTRNINRLNESFRDMQLRLLQAPLQADLTEQVWK
VQDALQNQTDSLLALAGLVQRLEGTLWGLHAQAAQTEQAVALLRDRTGQQSDSAQLELYQLQVE
SNRSQLLLQRHAGLLDGLAHRVGVLGEELADVGGALRGLNHSLSYDVALHSTWLQDLQVLVSNA
SADTRRMRLVHMDMEMQLKQELATLNVVTEDLRLKDWEHSIALRNITLAKGPPGPKGDQGNEGK
EGKPGSPGLPGSRGLPGERGDPGMPGPKGDDGKLGATGPMGMRGFKGERGPKGEKGERGERAAG
DMDFTMIRLVNGSGPHQGRVEVFHDRRWGTVCDDGWDKKDGDVVCRMLGFHSVEEVHRTARFGQ
GTGRIWMDDVNCKGTESSIFHCQFSKWGVTNCGHAEDAGVTCTAL

hide sequence

Ensembl Acc Id:

ENSRNOP00000019487 ⟸ ENSRNOT00000019487

Ensembl Acc Id:

ENSRNOP00000077438 ⟸ ENSRNOT00000116802

Protein Domains

SRCR

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A213-F1-model_v2	AlphaFold	D4A213	1-493	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699790

Promoter ID:

EPDNEW_R10313

Type:

initiation region

Name:

Scara5_1

Description:

scavenger receptor class A, member 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	15	49,069,161 - 49,069,221	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306539	AgrOrtholog
BioCyc Gene	G2FUF-13349	BioCyc
Ensembl Genes	ENSRNOG00000014398	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000019487	ENTREZGENE
	ENSRNOT00000019487.7	UniProtKB/TrEMBL
	ENSRNOT00000116802.2	UniProtKB/TrEMBL
Gene3D-CATH	3.10.250.10	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	SCARA5	UniProtKB/TrEMBL
	SRCR-like_dom_sf	UniProtKB/TrEMBL
	Srcr_rcpt	UniProtKB/TrEMBL
KEGG Report	rno:305974	UniProtKB/TrEMBL
NCBI Gene	305974	ENTREZGENE
PANTHER	COLLAGEN	UniProtKB/TrEMBL
	DELETED IN MALIGNANT BRAIN TUMORS 1 PROTEIN-LIKE	UniProtKB/TrEMBL
	SRCR DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
	SRCR	UniProtKB/TrEMBL
PhenoGen	Scara5	PhenoGen
PRINTS	SPERACTRCPTR	UniProtKB/TrEMBL
PROSITE	SRCR_1	UniProtKB/TrEMBL
	SRCR_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000014398	RatGTEx
SMART	SM00202	UniProtKB/TrEMBL
Superfamily-SCOP	Srcr_receptor	UniProtKB/TrEMBL
UniProt	A0A8I5YCD6_RAT	UniProtKB/TrEMBL
	A6K6K2	ENTREZGENE, UniProtKB/TrEMBL
	D3Z926	ENTREZGENE
	D4A213	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	D3Z926	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2014-07-16	Scara5	scavenger receptor class A, member 5	Scara5	scavenger receptor class A, member 5 (putative)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Scara5	scavenger receptor class A, member 5 (putative)	Scara5_predicted	scavenger receptor class A, member 5 (putative) (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Scara5_predicted	scavenger receptor class A, member 5 (putative) (predicted)	RGD1306539_predicted	similar to RIKEN cDNA 4933425F03 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1306539_predicted	similar to RIKEN cDNA 4933425F03 (predicted)	LOC305974_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305974_predicted	similar to RIKEN cDNA 4933425F03 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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