Rad54b (RAD54 homolog B) - Rat Genome Database

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Gene: Rad54b (RAD54 homolog B) Rattus norvegicus
Analyze
Symbol: Rad54b
Name: RAD54 homolog B
RGD ID: 1306507
Description: Human ortholog(s) of this gene implicated in colorectal cancer and non-Hodgkin lymphoma. Orthologous to human RAD54B (RAD54 homolog B); PARTICIPATES IN homologous recombination pathway of double-strand break repair; INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA repair and recombination protein RAD54B; fibrinogen silencer-binding protein; Fsbp; LOC313063; RAD54 homolog B (S. cerevisiae); RAD54, S. cerevisiae, homolog of, B; RGD1306507; similar to RAD54B homolog isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8529,829,465 - 29,901,967 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl529,855,304 - 29,901,964 (+)EnsemblGRCr8
mRatBN7.2525,032,112 - 25,104,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl525,032,066 - 25,104,616 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx527,167,139 - 27,235,913 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,759,892 - 28,828,662 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,708,587 - 28,777,369 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0525,140,531 - 25,214,469 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl525,146,949 - 25,214,376 (+)Ensemblrn6Rnor6.0
Rnor_5.0529,858,083 - 29,928,815 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4525,830,524 - 25,899,650 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera524,374,271 - 24,442,857 (+)NCBICelera
RGSC_v3.1525,805,592 - 25,899,511 (+)NCBI
Cytogenetic Map5q13NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
alpha-Zearalanol  (EXP)
amphotericin B  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
biphenyl-4-amine  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clorgyline  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
etoposide  (ISO)
geraniol  (ISO)
indometacin  (ISO)
inulin  (ISO)
L-ascorbic acid  (ISO)
leflunomide  (ISO)
melphalan  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
ochratoxin A  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Regulation of homologous recombination in eukaryotes. Heyer WD, etal., Annu Rev Genet. 2010;44:113-39. doi: 10.1146/annurev-genet-051710-150955.
3. An X11alpha/FSBP complex represses transcription of the GSK3beta gene promoter. Lau KF, etal., Neuroreport. 2010 Aug 4;21(11):761-6. doi: 10.1097/WNR.0b013e32833bfca0.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:16428451   PMID:19060904   PMID:19061978   PMID:25416956  


Genomics

Comparative Map Data
Rad54b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8529,829,465 - 29,901,967 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl529,855,304 - 29,901,964 (+)EnsemblGRCr8
mRatBN7.2525,032,112 - 25,104,630 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl525,032,066 - 25,104,616 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx527,167,139 - 27,235,913 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0528,759,892 - 28,828,662 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0528,708,587 - 28,777,369 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0525,140,531 - 25,214,469 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl525,146,949 - 25,214,376 (+)Ensemblrn6Rnor6.0
Rnor_5.0529,858,083 - 29,928,815 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4525,830,524 - 25,899,650 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera524,374,271 - 24,442,857 (+)NCBICelera
RGSC_v3.1525,805,592 - 25,899,511 (+)NCBI
Cytogenetic Map5q13NCBI
RAD54B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38894,371,960 - 94,475,115 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl894,371,960 - 94,475,133 (-)Ensemblhg38GRCh38
GRCh37895,384,188 - 95,487,343 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36895,453,364 - 95,556,486 (-)NCBIBuild 36Build 36hg18NCBI36
Celera891,570,193 - 91,673,298 (-)NCBICelera
Cytogenetic Map8q22.1NCBI
HuRef890,593,192 - 90,696,254 (-)NCBIHuRef
CHM1_1895,424,379 - 95,527,598 (-)NCBICHM1_1
T2T-CHM13v2.0895,496,851 - 95,599,948 (-)NCBIT2T-CHM13v2.0
Rad54b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39411,558,930 - 11,615,806 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl411,558,922 - 11,615,805 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38411,558,920 - 11,615,808 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl411,558,922 - 11,615,805 (+)Ensemblmm10GRCm38
MGSCv37411,486,119 - 11,542,954 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36411,486,119 - 11,542,954 (+)NCBIMGSCv36mm8
Celera411,370,521 - 11,427,320 (+)NCBICelera
Cytogenetic Map4A1NCBI
cM Map45.11NCBI
Rad54b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,597,450 - 10,686,005 (-)Ensembl
ChiLan1.0NW_00495541710,598,295 - 10,685,999 (-)NCBIChiLan1.0ChiLan1.0
RAD54B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27111,704,488 - 111,807,369 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1887,239,631 - 87,344,434 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0890,995,229 - 91,098,149 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1892,939,322 - 93,041,620 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl892,939,535 - 93,034,060 (-)EnsemblpanPan2panpan1.1
RAD54B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12939,096,680 - 39,195,054 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2939,098,098 - 39,195,112 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2939,257,809 - 39,359,514 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02939,300,442 - 39,402,291 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2939,293,199 - 39,402,284 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12939,326,093 - 39,415,024 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02939,309,124 - 39,410,322 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02939,752,073 - 39,851,462 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rad54b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,317,341 - 40,417,142 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365447,373,508 - 7,475,353 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365447,375,566 - 7,475,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD54B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,266,605 - 42,369,447 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1442,249,482 - 42,369,408 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2445,616,371 - 45,730,628 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RAD54B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1889,351,203 - 89,450,047 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl889,351,415 - 89,442,825 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603951,389,274 - 51,488,300 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad54b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247631,773,725 - 1,878,641 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247631,773,943 - 1,878,032 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rad54b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11131,955,417 - 132,024,055 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rad54b
718 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:75
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000061370
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)51373115343590997Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
1358353Srcrtb2Stress Responsive Cort Basal QTL 23.480.003blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)52367149379046465Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5862723052665523Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51460607859606078Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)51757663362576633Rat
1578774Tcas8Tongue tumor susceptibility QTL 83.47tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)51570745160707451Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5692228237468560Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5706553574335773Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51748608062486080Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
8552954Pigfal14Plasma insulin-like growth factor 1 level QTL 149blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)52602321171023211Rat
2303577Gluco47Glucose level QTL 473blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51652001961520019Rat
1641922Alcrsp8Alcohol response QTL 8alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)51748608062486080Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5862723053627230Rat
1600358Mamtr5Mammary tumor resistance QTL 5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)52367149368671493Rat

Markers in Region
RH140150  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4525,857,958 - 25,858,142UniSTSRGSC3.4
Celera524,403,129 - 24,403,313UniSTS
RH 3.4 Map5138.5UniSTS
Cytogenetic Map5q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 10 64 164 89 88 57 82 57 6 327 178 11 143 69 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000061370   ⟹   ENSRNOP00000058084
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl529,865,967 - 29,901,964 (+)Ensembl
mRatBN7.2 Ensembl525,032,066 - 25,104,616 (+)Ensembl
Rnor_6.0 Ensembl525,146,949 - 25,214,376 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094567   ⟹   ENSRNOP00000086936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl525,032,066 - 25,063,879 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097257   ⟹   ENSRNOP00000079617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl525,035,164 - 25,057,029 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104030   ⟹   ENSRNOP00000077486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl529,855,304 - 29,862,738 (+)Ensembl
mRatBN7.2 Ensembl525,058,012 - 25,063,879 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105229   ⟹   ENSRNOP00000095798
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl525,035,164 - 25,104,616 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000144287   ⟹   ENSRNOP00000103591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl529,855,304 - 29,868,676 (+)Ensembl
RefSeq Acc Id: NM_001191755   ⟹   NP_001178684
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,829,465 - 29,901,964 (+)NCBI
mRatBN7.2525,032,112 - 25,104,630 (+)NCBI
Rnor_6.0525,146,963 - 25,214,469 (+)NCBI
Rnor_5.0529,858,083 - 29,928,815 (+)NCBI
Celera524,374,271 - 24,442,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039109802   ⟹   XP_038965730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,832,367 - 29,901,967 (+)NCBI
mRatBN7.2525,034,921 - 25,104,616 (+)NCBI
RefSeq Acc Id: XM_039109806   ⟹   XP_038965734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8529,832,358 - 29,891,306 (+)NCBI
mRatBN7.2525,034,922 - 25,093,958 (+)NCBI
RefSeq Acc Id: NP_001178684   ⟸   NM_001191755
- UniProtKB: F1LYB7 (UniProtKB/TrEMBL),   A6II66 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000058084   ⟸   ENSRNOT00000061370
RefSeq Acc Id: XP_038965730   ⟸   XM_039109802
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AM82 (UniProtKB/TrEMBL),   A6II66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965734   ⟸   XM_039109806
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000095798   ⟸   ENSRNOT00000105229
Ensembl Acc Id: ENSRNOP00000086936   ⟸   ENSRNOT00000094567
Ensembl Acc Id: ENSRNOP00000077486   ⟸   ENSRNOT00000104030
Ensembl Acc Id: ENSRNOP00000079617   ⟸   ENSRNOT00000097257
Ensembl Acc Id: ENSRNOP00000103591   ⟸   ENSRNOT00000144287
Protein Domains
Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LYB7-F1-model_v2 AlphaFold F1LYB7 1-888 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306507 AgrOrtholog
BioCyc Gene G2FUF-41924 BioCyc
Ensembl Genes ENSRNOG00000039949 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061370 ENTREZGENE
  ENSRNOT00000061370.6 UniProtKB/TrEMBL
  ENSRNOT00000144287.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
  SWI2/SNF2 ATPases, N-terminal domain UniProtKB/TrEMBL
InterPro DEAD-like_helicase UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
  SNF2_RAD54_helicase_repair UniProtKB/TrEMBL
NCBI Gene 313063 ENTREZGENE
PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED UniProtKB/TrEMBL
  SNF2/RAD54 FAMILY MEMBER UniProtKB/TrEMBL
Pfam Helicase_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
PhenoGen Rad54b PhenoGen
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000039949 RatGTEx
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6AM82 ENTREZGENE
  A0ABK0LQW7_RAT UniProtKB/TrEMBL
  A6II66 ENTREZGENE, UniProtKB/TrEMBL
  F1LYB7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-02-12 Rad54b  RAD54 homolog B  Rad54b  RAD54 homolog B (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Rad54b  RAD54 homolog B (S. cerevisiae)  RGD1306507  similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog of, B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306507  similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog of, B   RGD1306507_predicted  similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog of, B (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1306507_predicted  similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog of, B (predicted)  LOC313063_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC313063_predicted  similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog of, B (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL