Rad1 (RAD1 checkpoint DNA exonuclease) - Rat Genome Database

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Gene: Rad1 (RAD1 checkpoint DNA exonuclease) Rattus norvegicus
Analyze
Symbol: Rad1
Name: RAD1 checkpoint DNA exonuclease
RGD ID: 1306496
Description: Predicted to be involved in DNA repair; cellular response to ionizing radiation; and negative regulation of cell cycle phase transition. Predicted to be located in chromosome and nucleoplasm. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD1 (RAD1 checkpoint DNA exonuclease); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cell cycle checkpoint protein RAD1; LOC294800; RAD1 homolog; RAD1 homolog (S. pombe)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,188,755 - 61,196,868 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl261,188,727 - 61,196,867 (+)EnsemblGRCr8
mRatBN7.2259,461,597 - 59,469,707 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,461,607 - 59,469,689 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx266,569,365 - 66,577,401 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0264,690,895 - 64,698,931 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0259,692,256 - 59,700,292 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0260,461,513 - 60,469,646 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,461,551 - 60,469,685 (+)Ensemblrn6Rnor6.0
Rnor_5.0284,204,582 - 84,212,699 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4259,837,934 - 59,845,973 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera259,204,129 - 59,212,168 (-)NCBICelera
RGSC_v3.1259,766,695 - 59,774,038 (+)NCBI
Cytogenetic Map2q16NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
checkpoint clamp complex  (IBA,IEA,ISO)
chromosome  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9660799   PMID:9716408   PMID:21659603   PMID:22926577   PMID:37226090  


Genomics

Comparative Map Data
Rad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8261,188,755 - 61,196,868 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl261,188,727 - 61,196,867 (+)EnsemblGRCr8
mRatBN7.2259,461,597 - 59,469,707 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl259,461,607 - 59,469,689 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx266,569,365 - 66,577,401 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0264,690,895 - 64,698,931 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0259,692,256 - 59,700,292 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0260,461,513 - 60,469,646 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl260,461,551 - 60,469,685 (+)Ensemblrn6Rnor6.0
Rnor_5.0284,204,582 - 84,212,699 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4259,837,934 - 59,845,973 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera259,204,129 - 59,212,168 (-)NCBICelera
RGSC_v3.1259,766,695 - 59,774,038 (+)NCBI
Cytogenetic Map2q16NCBI
RAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38534,905,260 - 34,915,504 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl534,900,072 - 34,918,989 (-)Ensemblhg38GRCh38
GRCh37534,905,365 - 34,915,609 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36534,941,122 - 34,954,139 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34534,944,052 - 34,954,140NCBI
Celera534,787,597 - 34,798,012 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef534,854,020 - 34,864,435 (-)NCBIHuRef
CHM1_1534,907,725 - 34,918,140 (-)NCBICHM1_1
T2T-CHM13v2.0535,152,293 - 35,165,170 (-)NCBIT2T-CHM13v2.0
Rad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391510,486,104 - 10,499,149 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1510,486,104 - 10,499,149 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381510,486,018 - 10,499,063 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1510,486,018 - 10,499,063 (+)Ensemblmm10GRCm38
MGSCv371510,415,789 - 10,423,446 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361510,430,759 - 10,438,416 (+)NCBIMGSCv36mm8
Celera1510,283,117 - 10,290,774 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map155.35NCBI
Rad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542620,035,605 - 20,041,974 (-)Ensembl
ChiLan1.0NW_00495542620,035,605 - 20,042,340 (-)NCBIChiLan1.0ChiLan1.0
RAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2475,420,956 - 75,437,011 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1573,574,665 - 73,581,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0575,452,153 - 75,465,022 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1580,732,954 - 80,744,448 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl580,732,954 - 80,744,448 (+)EnsemblpanPan2panpan1.1
RAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1473,372,391 - 73,393,148 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl473,385,566 - 73,452,033 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha472,988,831 - 73,050,038 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0473,878,145 - 73,939,381 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl473,891,311 - 73,957,736 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1473,625,743 - 73,686,780 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0473,749,400 - 73,810,305 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0474,282,645 - 74,344,152 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213224,745,236 - 224,764,008 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365186,620,325 - 6,628,393 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365186,620,325 - 6,626,328 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1620,466,889 - 20,512,135 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11620,491,851 - 20,512,198 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21621,398,449 - 21,414,031 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1433,800,279 - 33,807,986 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl433,801,230 - 33,807,457 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607124,103,647 - 24,110,763 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475919,994,696 - 20,001,541 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475919,994,660 - 20,001,545 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rad1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v13170,243,333 - 170,251,512 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rad1
36 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:100
Interacting mature miRNAs:105
Transcripts:ENSRNOT00000024557
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6480225Gdil1Gastrointestinal dilation QTL 1enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)25838820177302351Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)261051883104684275Rat
7387318Stl32Serum triglyceride level QTL 323.20.0003blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)22411781369117813Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23675034481750344Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)261051541105724065Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22203804467038044Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
152025242Bw191Body weight QTL 1913.62body mass (VT:0001259)240306867124537199Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)227148328145807373Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22888999173889991Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)241801363104744824Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24490435585286097Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979159440891Rat
1300155Bp174Blood pressure QTL 1744.09arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)244537979112567334Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)261051541105724065Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)27605533104774005Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328159440891Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266683465677Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)25126685996266859Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)260861391105861391Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)227148557159440760Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)238426449111295694Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)228652666139067443Rat
152025206Hrtrt23Heart rate QTL 235.98heart pumping trait (VT:2000009)230219200171802126Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)227148328159440891Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21822713763227137Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23686864381868643Rat
152025204Hrtrt22Heart rate QTL 225.6heart pumping trait (VT:2000009)230219200171802126Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)24490435589904355Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)261051541143746880Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)23326999678269996Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22865266673652666Rat

Markers in Region
RH133466  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8261,196,135 - 61,196,637 (+)Marker Load Pipeline
mRatBN7.2259,468,974 - 59,469,476 (+)MAPPERmRatBN7.2
Rnor_6.0260,468,914 - 60,469,415NCBIRnor6.0
Rnor_5.0284,204,813 - 84,205,314UniSTSRnor5.0
RGSC_v3.4259,845,261 - 59,845,762UniSTSRGSC3.4
Celera259,204,340 - 59,204,841UniSTS
Cytogenetic Map2q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024557   ⟹   ENSRNOP00000024557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl261,188,727 - 61,196,867 (+)Ensembl
mRatBN7.2 Ensembl259,461,607 - 59,469,689 (+)Ensembl
Rnor_6.0 Ensembl260,461,551 - 60,469,685 (+)Ensembl
RefSeq Acc Id: NM_001106419   ⟹   NP_001099889
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8261,188,809 - 61,196,848 (+)NCBI
mRatBN7.2259,461,648 - 59,469,687 (+)NCBI
Rnor_6.0260,461,587 - 60,469,626 (+)NCBI
Rnor_5.0284,204,582 - 84,212,699 (-)NCBI
RGSC_v3.4259,837,934 - 59,845,973 (+)RGD
Celera259,204,129 - 59,212,168 (-)RGD
Sequence:
RefSeq Acc Id: XM_006232058   ⟹   XP_006232120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8261,188,757 - 61,196,868 (+)NCBI
mRatBN7.2259,461,597 - 59,469,707 (+)NCBI
Rnor_6.0260,461,513 - 60,469,646 (+)NCBI
Rnor_5.0284,204,582 - 84,212,699 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006232059   ⟹   XP_006232121
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8261,188,757 - 61,196,868 (+)NCBI
mRatBN7.2259,461,597 - 59,469,707 (+)NCBI
Rnor_6.0260,461,513 - 60,469,646 (+)NCBI
Rnor_5.0284,204,582 - 84,212,699 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005500255
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8261,188,756 - 61,196,520 (+)NCBI
mRatBN7.2259,461,597 - 59,469,376 (+)NCBI
RefSeq Acc Id: XR_010063590
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8261,188,755 - 61,196,536 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001099889 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232120 (Get FASTA)   NCBI Sequence Viewer  
  XP_006232121 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL82989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000024557
  ENSRNOP00000024557.4
RefSeq Acc Id: NP_001099889   ⟸   NM_001106419
- UniProtKB: D3ZC52 (UniProtKB/TrEMBL),   A6KJS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232121   ⟸   XM_006232059
- Peptide Label: isoform X1
- UniProtKB: D3ZC52 (UniProtKB/TrEMBL),   A6KJS9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006232120   ⟸   XM_006232058
- Peptide Label: isoform X1
- UniProtKB: D3ZC52 (UniProtKB/TrEMBL),   A6KJS9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000024557   ⟸   ENSRNOT00000024557

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZC52-F1-model_v2 AlphaFold D3ZC52 1-280 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691184
Promoter ID:EPDNEW_R1709
Type:initiation region
Name:Rad1_1
Description:RAD1 checkpoint DNA exonuclease
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0260,461,587 - 60,461,647EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306496 AgrOrtholog
BioCyc Gene G2FUF-54082 BioCyc
Ensembl Genes ENSRNOG00000018063 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024557 ENTREZGENE
  ENSRNOT00000024557.8 UniProtKB/TrEMBL
Gene3D-CATH 3.70.10.10 UniProtKB/TrEMBL
InterPro DNA_clamp_sf UniProtKB/TrEMBL
  Rad1_Rec1 UniProtKB/TrEMBL
  Rad1_repair UniProtKB/TrEMBL
KEGG Report rno:294800 UniProtKB/TrEMBL
NCBI Gene 294800 ENTREZGENE
PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD1 UniProtKB/TrEMBL
  Rad1_Rec1 UniProtKB/TrEMBL
Pfam Rad1 UniProtKB/TrEMBL
PhenoGen Rad1 PhenoGen
PRINTS RAD1REC1 UniProtKB/TrEMBL
  RAD1REPAIR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018063 RatGTEx
Superfamily-SCOP DNA clamp UniProtKB/TrEMBL
UniProt A6KJS9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC52 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-13 Rad1  RAD1 checkpoint DNA exonuclease  Rad1  RAD1 homolog (S. pombe)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Rad1  RAD1 homolog (S. pombe)   Rad1_predicted  RAD1 homolog (S. pombe) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rad1_predicted  RAD1 homolog (S. pombe) (predicted)      Symbol and Name status set to approved 70820 APPROVED