Galnt3 (polypeptide N-acetylgalactosaminyltransferase 3) - Rat Genome Database

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Gene: Galnt3 (polypeptide N-acetylgalactosaminyltransferase 3) Rattus norvegicus
Analyze
Symbol: Galnt3
Name: polypeptide N-acetylgalactosaminyltransferase 3
RGD ID: 1306443
Description: Predicted to enable calcium ion binding activity; manganese ion binding activity; and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in protein O-linked glycosylation via serine and protein O-linked glycosylation via threonine. Predicted to act upstream of or within spermatogenesis. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in Golgi apparatus. Orthologous to human GALNT3 (polypeptide N-acetylgalactosaminyltransferase 3); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC366061; MGC124508; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8371,150,559 - 71,187,321 (-)NCBIGRCr8
mRatBN7.2350,742,500 - 50,779,266 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,742,512 - 50,766,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx354,085,866 - 54,109,634 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,669,491 - 62,693,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,445,630 - 60,469,408 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0352,174,469 - 52,212,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl352,175,547 - 52,212,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,806,436 - 58,843,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4348,026,128 - 48,049,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,923,236 - 47,946,144 (-)NCBI
Celera350,332,309 - 50,356,022 (-)NCBICelera
Cytogenetic Map3q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-diaminodiphenylmethane  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
all-trans-retinoic acid  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
carnosic acid  (ISO)
CGP 52608  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
deguelin  (ISO)
diarsenic trioxide  (ISO)
diclofenac  (EXP)
dieldrin  (ISO)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
folic acid  (ISO)
furan  (EXP)
gentamycin  (EXP)
L-methionine  (ISO)
lidocaine  (EXP)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
phosgene  (ISO)
picoxystrobin  (ISO)
potassium chromate  (ISO)
pyrimidifen  (ISO)
quercetin  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
Triptolide  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9295285   PMID:12477932   PMID:12506059   PMID:16638743   PMID:18570454  


Genomics

Comparative Map Data
Galnt3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8371,150,559 - 71,187,321 (-)NCBIGRCr8
mRatBN7.2350,742,500 - 50,779,266 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl350,742,512 - 50,766,268 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx354,085,866 - 54,109,634 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0362,669,491 - 62,693,259 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0360,445,630 - 60,469,408 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0352,174,469 - 52,212,395 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl352,175,547 - 52,212,412 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0358,806,436 - 58,843,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4348,026,128 - 48,049,883 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1347,923,236 - 47,946,144 (-)NCBI
Celera350,332,309 - 50,356,022 (-)NCBICelera
Cytogenetic Map3q21NCBI
GALNT3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382165,747,588 - 165,794,692 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2165,747,588 - 165,794,659 (-)EnsemblGRCh38hg38GRCh38
GRCh372166,604,098 - 166,650,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362166,312,559 - 166,359,049 (-)NCBINCBI36Build 36hg18NCBI36
Build 342166,428,830 - 166,452,717NCBI
Celera2160,214,267 - 160,260,749 (-)NCBICelera
Cytogenetic Map2q24.3NCBI
HuRef2158,486,232 - 158,532,744 (-)NCBIHuRef
CHM1_12166,610,616 - 166,657,104 (-)NCBICHM1_1
T2T-CHM13v2.02166,204,962 - 166,251,751 (-)NCBIT2T-CHM13v2.0
Galnt3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39265,913,110 - 65,955,217 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl265,913,110 - 65,955,338 (-)EnsemblGRCm39 Ensembl
GRCm38266,082,766 - 66,125,056 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl266,082,766 - 66,124,994 (-)EnsemblGRCm38mm10GRCm38
MGSCv37265,920,823 - 65,962,850 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36265,884,272 - 65,934,377 (-)NCBIMGSCv36mm8
Celera267,762,030 - 67,803,898 (-)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map238.99NCBI
Galnt3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554498,379,164 - 8,406,988 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554498,365,951 - 8,406,988 (+)NCBIChiLan1.0ChiLan1.0
GALNT3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21368,400,623 - 68,447,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B68,413,360 - 68,467,548 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B53,014,933 - 53,066,330 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B170,492,482 - 170,539,231 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B170,335,216 - 170,539,231 (-)Ensemblpanpan1.1panPan2
GALNT3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13610,895,366 - 10,990,848 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3610,896,128 - 10,919,000 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3611,040,139 - 11,084,227 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03611,029,831 - 11,074,091 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3611,030,584 - 11,124,756 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13611,111,447 - 11,155,527 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03611,084,131 - 11,128,392 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03611,196,286 - 11,240,452 (-)NCBIUU_Cfam_GSD_1.0
Galnt3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303128,040,946 - 128,145,958 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646913,538,258 - 13,576,657 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646913,538,349 - 13,576,608 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1572,293,614 - 72,342,435 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11572,276,502 - 72,343,524 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21580,794,975 - 80,818,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11051,237,150 - 51,284,301 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1051,236,756 - 51,259,062 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040148,228,855 - 148,279,748 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247873,559,903 - 3,591,615 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247873,557,946 - 3,613,235 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt3
320 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:175
Interacting mature miRNAs:193
Transcripts:ENSRNOT00000007615
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)31086191289878372Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)31500542276927699Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)31695470861954708Rat
10450804Scl70Serum cholesterol level QTL 704.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
10450794Scl69Serum cholesterol level QTL 696.30.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)32071409065714090Rat
2302055Pia30Pristane induced arthritis QTL 303.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)32793691972936919Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)32824968773249687Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)32824968773249687Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)32824968773249687Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)32824968773249687Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32824968773249687Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)32846857173468571Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)32846857173468571Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)33035677398535386Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)33068464275684642Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)33068464275684642Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
11565451Bw177Body weight QTL 1770.002body mass (VT:0001259)body weight (CMO:0000012)33142640370668733Rat
11565452Kidm57Kidney mass QTL 570.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33142640370668733Rat
12879866Cm94Cardiac mass QTL 940.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33142640370668733Rat
12879867Cm95Cardiac mass QTL 950.047heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33142640370668733Rat
12879868Am6Aortic mass QTL 60.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33142640370668733Rat
2301400Cm68Cardiac mass QTL 680.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33142640370668733Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33370334761017857Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)33370334778196190Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)333703347104104347Rat
10450852Stl33Serum triglyceride level QTL 333.40.05blood LDL triglyceride amount (VT:0010699)blood lipoprotein triglyceride level (CMO:0002685)33819223350749747Rat
10450816Scl75Serum cholesterol level QTL 754.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
10450813Scl74Serum cholesterol level QTL 745.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33819223350749747Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
738019Anxrr10Anxiety related response QTL 103.9exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)33851780383517803Rat
634317Bw117Body weight QTL 1173.58abdominal fat pad mass (VT:1000711)abdominal fat pad weight to body weight ratio (CMO:0000095)33945463753296578Rat
2302276Bw82Body weight QTL 824.32body mass (VT:0001259)body weight (CMO:0000012)33945463762951183Rat
1331777Bw24Body weight QTL 243.503body mass (VT:0001259)body weight (CMO:0000012)33945463789115240Rat
1331795Rf30Renal function QTL 303.708urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)33945463789115240Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)341874578104104347Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)34382736490905114Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)347233430110362260Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)350437504115638231Rat

Markers in Region
D3Rat40  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,766,449 - 50,766,577 (+)MAPPERmRatBN7.2
Rnor_6.0352,199,493 - 52,199,620NCBIRnor6.0
Rnor_5.0358,830,614 - 58,830,741UniSTSRnor5.0
RGSC_v3.4348,050,064 - 48,050,192RGDRGSC3.4
RGSC_v3.4348,050,065 - 48,050,192UniSTSRGSC3.4
RGSC_v3.1347,946,436 - 47,946,564RGD
Celera350,356,204 - 50,356,327UniSTS
RH 2.0 Map3418.3RGD
FHH x ACI Map334.98RGD
Cytogenetic Map3q21UniSTS
D3Rat66  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,749,627 - 50,749,747 (+)MAPPERmRatBN7.2
Rnor_6.0352,182,673 - 52,182,792NCBIRnor6.0
Rnor_5.0358,813,794 - 58,813,913UniSTSRnor5.0
RGSC_v3.4348,033,245 - 48,033,364UniSTSRGSC3.4
RGSC_v3.4348,033,244 - 48,033,364RGDRGSC3.4
RGSC_v3.1347,929,617 - 47,929,736RGD
Celera350,339,425 - 50,339,544UniSTS
RH 3.4 Map3609.5RGD
RH 3.4 Map3609.5UniSTS
RH 2.0 Map3416.3RGD
FHH x ACI Map336.06RGD
Cytogenetic Map3q21UniSTS
D3Got208  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2350,758,721 - 50,758,927 (+)MAPPERmRatBN7.2
Rnor_6.0352,191,767 - 52,191,970NCBIRnor6.0
Rnor_5.0358,822,888 - 58,823,091UniSTSRnor5.0
RGSC_v3.4348,042,339 - 48,042,542UniSTSRGSC3.4
Celera350,348,519 - 50,348,680UniSTS
Cytogenetic Map3q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 29 9 1
Low 1 4 12 4 19 4 62 6 32 10
Below cutoff 18 42 34 34 5 7 12 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000007615   ⟹   ENSRNOP00000007615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl350,742,512 - 50,766,268 (-)Ensembl
Rnor_6.0 Ensembl352,175,547 - 52,212,412 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094310   ⟹   ENSRNOP00000089927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl350,742,512 - 50,766,268 (-)Ensembl
RefSeq Acc Id: NM_001015032   ⟹   NP_001015032
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8371,150,570 - 71,174,323 (-)NCBI
mRatBN7.2350,742,511 - 50,766,268 (-)NCBI
Rnor_6.0352,175,558 - 52,199,311 (-)NCBI
Rnor_5.0358,806,436 - 58,843,496 (-)NCBI
RGSC_v3.4348,026,128 - 48,049,883 (-)RGD
Celera350,332,309 - 50,356,022 (-)RGD
Sequence:
RefSeq Acc Id: XM_006234290   ⟹   XP_006234352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8371,150,559 - 71,187,321 (-)NCBI
mRatBN7.2350,742,500 - 50,779,266 (-)NCBI
Rnor_6.0352,174,469 - 52,212,395 (-)NCBI
Rnor_5.0358,806,436 - 58,843,496 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001015032 (Get FASTA)   NCBI Sequence Viewer  
  XP_006234352 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI01887 (Get FASTA)   NCBI Sequence Viewer  
  BAD93347 (Get FASTA)   NCBI Sequence Viewer  
  EDL79029 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007615
  ENSRNOP00000007615.4
  ENSRNOP00000089927.1
Reference Protein Sequences
RefSeq Acc Id: NP_001015032   ⟸   NM_001015032
- UniProtKB: Q3T1J4 (UniProtKB/TrEMBL),   A6HLX8 (UniProtKB/TrEMBL),   Q58A69 (UniProtKB/TrEMBL),   F7FMK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234352   ⟸   XM_006234290
- Peptide Label: isoform X1
- UniProtKB: Q3T1J4 (UniProtKB/TrEMBL),   A6HLX8 (UniProtKB/TrEMBL),   Q58A69 (UniProtKB/TrEMBL),   F7FMK3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000007615   ⟸   ENSRNOT00000007615
RefSeq Acc Id: ENSRNOP00000089927   ⟸   ENSRNOT00000094310
Protein Domains
Ricin B lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3T1J4-F1-model_v2 AlphaFold Q3T1J4 1-633 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692107
Promoter ID:EPDNEW_R2630
Type:multiple initiation site
Name:Galnt3_1
Description:polypeptide N-acetylgalactosaminyltransferase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0352,212,403 - 52,212,463EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306443 AgrOrtholog
BioCyc Gene G2FUF-49550 BioCyc
BioCyc Pathway PWY-7433 [mucin core 1 and core 2 O-glycosylation] BioCyc
  PWY-7435 [mucin core 3 and core 4 O-glycosylation] BioCyc
BioCyc Pathway Image PWY-7433 BioCyc
  PWY-7435 BioCyc
Ensembl Genes ENSRNOG00000005727 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007615 ENTREZGENE
  ENSRNOT00000007615.7 UniProtKB/TrEMBL
  ENSRNOT00000094310.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7929522 IMAGE-MGC_LOAD
InterPro GalNAc-T UniProtKB/TrEMBL
  Glyco_trans_2 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
KEGG Report rno:366061 UniProtKB/TrEMBL
MGC_CLONE MGC:124508 IMAGE-MGC_LOAD
NCBI Gene 366061 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 3 UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/TrEMBL
PhenoGen Galnt3 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005727 RatGTEx
SMART RICIN UniProtKB/TrEMBL
Superfamily-SCOP RicinB_like UniProtKB/TrEMBL
  SSF53448 UniProtKB/TrEMBL
UniProt A0A8I6A8B0_RAT UniProtKB/TrEMBL
  A6HLX8 ENTREZGENE, UniProtKB/TrEMBL
  F7FMK3 ENTREZGENE, UniProtKB/TrEMBL
  Q3T1J4 ENTREZGENE
  Q58A69 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q3T1J4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-04-30 Galnt3  polypeptide N-acetylgalactosaminyltransferase 3  Galnt3  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-17 Galnt3  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)  Galnt3  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Galnt3  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3  Galnt3_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Galnt3_predicted  UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED