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Gene: Bcdin3d (BCDIN3 domain containing RNA methyltransferase) Rattus norvegicus

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Symbol:

Bcdin3d

Name:

BCDIN3 domain containing RNA methyltransferase

RGD ID:

1306433

Description:

Predicted to enable pre-miRNA binding activity; small RNA 2'-O-methyltransferase activity; and tRNA methyltransferase activity. Predicted to be involved in negative regulation of pre-miRNA processing; pre-miRNA processing; and tRNA methylation. Predicted to be located in cytosol; nucleoplasm; and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human BCDIN3D (BCDIN3 domain containing RNA methyltransferase); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

BCDIN3 domain containing; BCDIN3 domain containing RNA methyltransfease; BCDIN3 domain-containing protein; LOC363001; pre-miRNA 5'-monophosphate methyltransferase; probable methyltransferase BCDIN3D; RGD1306433; RNA 5'-monophosphate methyltransferase; similar to RIKEN cDNA 4930556P03

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	132,484,404 - 132,488,998 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	132,484,431 - 132,488,998 (-)	Ensembl				GRCr8
mRatBN7.2	7	130,605,540 - 130,610,134 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	130,605,541 - 130,610,115 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	132,408,793 - 132,413,362 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	134,634,376 - 134,638,941 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	134,546,889 - 134,551,454 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	141,132,106 - 141,136,700 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	141,132,133 - 141,136,700 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	115,635,386 - 115,639,979 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	138,218,542 - 138,223,136 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	127,087,893 - 127,092,463 (-)	NCBI		Celera
RGSC_v3.1	7	138,295,005 - 138,299,552 (-)	NCBI
Cytogenetic Map	7	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Moebius syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

choline (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

folic acid (ISO)

GSK-J4 (ISO)

indometacin (ISO)

inulin (ISO)

iron dichloride (ISO)

L-methionine (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

rac-lactic acid (ISO)

sevoflurane (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

methylation (IEA)

negative regulation of pre-miRNA processing (IBA,IEA,ISO,ISS)

pre-miRNA processing (IEA,ISO)

RNA methylation (IEA,ISO)

tRNA methylation (IEA,ISO,ISS)

Cellular Component

cytoplasm (IBA,IEA,ISO,ISS)

cytosol (IEA,ISO)

Molecular Function

methyltransferase activity (IEA)

O-methyltransferase activity (IBA,ISO)

pre-miRNA binding (IEA,ISO)

protein binding (ISO)

RNA methyltransferase activity (IBA,IEA,ISO,ISS)

small RNA 2'-O-methyltransferase activity (IEA,ISO,ISS)

transferase activity (IEA)

tRNA methyltransferase activity (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23063121	PMID:28119416	PMID:31919512

Genomics

Comparative Map Data

Bcdin3d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	132,484,404 - 132,488,998 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	132,484,431 - 132,488,998 (-)	Ensembl				GRCr8
mRatBN7.2	7	130,605,540 - 130,610,134 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	130,605,541 - 130,610,115 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	132,408,793 - 132,413,362 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	134,634,376 - 134,638,941 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	134,546,889 - 134,551,454 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	141,132,106 - 141,136,700 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	141,132,133 - 141,136,700 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	115,635,386 - 115,639,979 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	138,218,542 - 138,223,136 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	127,087,893 - 127,092,463 (-)	NCBI		Celera
RGSC_v3.1	7	138,295,005 - 138,299,552 (-)	NCBI
Cytogenetic Map	7	q36	NCBI

BCDIN3D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	49,836,043 - 49,843,106 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	49,836,043 - 49,843,106 (-)	Ensembl			hg38	GRCh38
GRCh37	12	50,229,826 - 50,236,889 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	48,517,823 - 48,523,142 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	12	49,025,845 - 49,032,931 (-)	NCBI		Celera
Cytogenetic Map	12	q13.12	NCBI
HuRef	12	47,260,836 - 47,267,922 (-)	NCBI		HuRef
CHM1_1	12	50,196,151 - 50,203,237 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	49,799,057 - 49,806,118 (-)	NCBI		T2T-CHM13v2.0

Bcdin3d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	99,367,965 - 99,372,611 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	99,367,960 - 99,372,611 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	99,470,084 - 99,474,730 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	99,470,079 - 99,474,730 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	99,300,515 - 99,305,161 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	99,298,118 - 99,302,763 (-)	NCBI		MGSCv36	mm8
Celera	15	101,625,365 - 101,630,003 (-)	NCBI		Celera
Cytogenetic Map	15	F1	NCBI
cM Map	15	56.13	NCBI

Bcdin3d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955547	427,432 - 432,455 (-)	Ensembl
ChiLan1.0	NW_004955547	427,127 - 432,482 (-)	NCBI	ChiLan1.0	ChiLan1.0

BCDIN3D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	44,338,069 - 44,348,851 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	44,334,821 - 44,347,456 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	38,907,254 - 38,913,958 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	39,802,601 - 39,807,948 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	39,802,601 - 39,807,948 (+)	Ensembl			panPan2	panpan1.1

BCDIN3D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	4,851,156 - 4,860,322 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	4,851,063 - 4,855,945 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	41,399,538 - 41,406,533 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	4,900,535 - 4,907,530 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	4,900,390 - 4,905,300 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	4,866,116 - 4,873,088 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	4,855,524 - 4,862,527 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	41,794,412 - 41,801,407 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Bcdin3d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	65,643,738 - 65,651,357 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	7,514,348 - 7,521,017 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	7,516,324 - 7,521,063 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BCDIN3D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	15,751,312 - 15,761,537 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	15,755,307 - 15,761,645 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	16,197,466 - 16,203,648 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BCDIN3D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	46,076,225 - 46,082,018 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	46,076,827 - 46,081,784 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	200,041,421 - 200,048,446 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bcdin3d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624816	2,447,739 - 2,453,228 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624816	2,447,703 - 2,455,543 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Bcdin3d
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	272,281,774 - 272,286,070 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Bcdin3d
34 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	293
Count of miRNA genes:	182
Interacting mature miRNAs:	212
Transcripts:	ENSRNOT00000043408
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	121393075	137014596	Rat
634331	Pia17	Pristane induced arthritis QTL 17	4.7		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	7	132099939	137014596	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	119280025	135560836	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	115313999	136544683	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH134395

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	130,605,759 - 130,605,973 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	141,132,326 - 141,132,539	NCBI	Rnor6.0
Rnor_5.0	X	115,635,606 - 115,635,819	UniSTS	Rnor5.0
RGSC_v3.4	7	138,218,762 - 138,218,975	UniSTS	RGSC3.4
Celera	7	127,088,113 - 127,088,326	UniSTS
RH 3.4 Map	7	1077.3	UniSTS
Cytogenetic Map	7	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	89	59	6	353	189	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129346	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474035	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000091538 ⟹ ENSRNOP00000070196

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	132,484,431 - 132,488,998 (-)	Ensembl
mRatBN7.2 Ensembl	7	130,605,541 - 130,610,115 (-)	Ensembl
Rnor_6.0 Ensembl	7	141,132,133 - 141,136,700 (-)	Ensembl

RefSeq Acc Id:

NM_001108751 ⟹ NP_001102221

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	132,484,404 - 132,488,998 (-)	NCBI
mRatBN7.2	7	130,605,540 - 130,610,134 (-)	NCBI
Rnor_6.0	7	141,132,106 - 141,136,700 (-)	NCBI
Rnor_5.0	X	115,635,386 - 115,639,979 (-)	NCBI
RGSC_v3.4	7	138,218,542 - 138,223,136 (-)	RGD
Celera	7	127,087,893 - 127,092,463 (-)	RGD

Sequence:

show sequence

AGACTTCCGGTTCCGCTCCGACCCGGGGACCGAGGGTGATGGCGGCAACCCAGGAATTGTCCAA
AGGGGGCGTTGAAGAGGCTGTGGAGGAAGACGACCCGGCAGCTTTGAAGCCTGGGGCCGCGCCG
TTCGGAAATTTCCCTCATTATTCCCGCTTCCACCCTCCCGAGCAAAGGCTCCGCCTTCTGCCCC
CGGAGCTTCTTCGACAGCTCTTCCCTCCCGAGGGTCCCGAGAGGAGGCCGATCCTAGGGCTCGA
CGTGGGGTGTAACTCCGGGGATCTGAGCATGGCTCTGTATAAACATTTCCTTTCCCCGCATGAT
GGGGAGACCAGCTCCGGCACTTCCAGAGAACTCCGCCTCCTCTGCTGTGATATAGATCCAGTCC
TTGTGGAGCGGGCTGAAAATGGCTGTCGCTTTCCTGATGCCTTGACCTTTATCACCCTGGACAT
CATGGATCAAGAGAGCAGGAAGGTTCCCTTGAGTTCTTTCTTAAGCCAGTTTGGGCGTTCCGTT
TTTGACATTGTCTTCTGCATGTCAGTAACCATGTGGATTCACCTGAACCATGGAGACCGTGGTC
TGTGCGAGTTCCTGGCCCACGTCTCCTCTCTCTGCAGCTACCTCCTCGTGGAGCCACAGCCCTG
GAAGTGTTACCGGGCAGCCGCAAGACGCCTACGCAAGCTGGGACTCCACAATTTTGATCACTTC
CGCTCCCTGGCCATCCGAGGTGACATGGCCAGCCAGATCGTGCGAATCTTGACGCAGGACCACG
GGATGGAGTTAGCATGCTGTTTTGGCAACACCAGTTGGGACCGAAGCCTTCTTCTCTTCAGAGC
AAAGCACACCGAGGAGACTCAGGCAATCCCTGAATCGTCAACCAAAGAGACAGGGACGGATTAA
GATAGTGAAGGCAGTGGGACAGACCAGTAAAGAGAGACTGGAGCTTCTATACCGAGACTCGAGT
TTGCGTCCCTGAGATCTGGCAGGAGCGTTGGGCAAAGTGTCCGAAGCAAGCAGCTGAAAGGCAC
TGTCTGTGTCCCGGGTTGCTTGGACCGTGCTGGGAATGAGTTCATAGAACTGCGGGCTCGAGGC
AGCTGGATAGATTGTGGTCCCCTAGGAATGAAACTGCTCTCGGAAGTGGTTTTGTTTCCTGAGG
ATCCTTAAGGTATTGGGTGTGCTCGGCAGCGAGTCTATGACGAACCTCATCTCTAGCTCAAAGG
GGTTATTTATTAAAAAAGAAACAGAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102221	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D4ABH7	(Get FASTA)	NCBI Sequence Viewer
	EDL86984	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070196
	ENSRNOP00000070196.1

RefSeq Acc Id:

NP_001102221 ⟸ NM_001108751

- UniProtKB:

D4ABH7 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAATQELSKGGVEEAVEEDDPAALKPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFPPEGP
ERRPILGLDVGCNSGDLSMALYKHFLSPHDGETSSGTSRELRLLCCDIDPVLVERAENGCRFPD
ALTFITLDIMDQESRKVPLSSFLSQFGRSVFDIVFCMSVTMWIHLNHGDRGLCEFLAHVSSLCS
YLLVEPQPWKCYRAAARRLRKLGLHNFDHFRSLAIRGDMASQIVRILTQDHGMELACCFGNTSW
DRSLLLFRAKHTEETQAIPESSTKETGTD

hide sequence

Ensembl Acc Id:

ENSRNOP00000070196 ⟸ ENSRNOT00000091538

Protein Domains

Bin3-type SAM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ABH7-F1-model_v2	AlphaFold	D4ABH7	1-285	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695643

Promoter ID:

EPDNEW_R6168

Type:

single initiation site

Name:

Bcdin3d_1

Description:

BCDIN3 domain containing RNA methyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	7	141,136,688 - 141,136,748	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306433	AgrOrtholog
BioCyc Gene	G2FUF-32069	BioCyc
Ensembl Genes	ENSRNOG00000058430	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000091538	ENTREZGENE
	ENSRNOT00000091538.2	UniProtKB/Swiss-Prot
Gene3D-CATH	3.40.50.150	UniProtKB/Swiss-Prot
InterPro	Bin3-like	UniProtKB/Swiss-Prot
	Bin3_C	UniProtKB/Swiss-Prot
	BIN3_SAM-bd_dom	UniProtKB/Swiss-Prot
	SAM-dependent_MTases	UniProtKB/Swiss-Prot
KEGG Report	rno:363001	UniProtKB/Swiss-Prot
NCBI Gene	363001	ENTREZGENE
PANTHER	PTHR12315	UniProtKB/Swiss-Prot
	RNA 5'-MONOPHOSPHATE METHYLTRANSFERASE	UniProtKB/Swiss-Prot
Pfam	Bin3	UniProtKB/Swiss-Prot
PhenoGen	Bcdin3d	PhenoGen
PROSITE	BIN3_SAM	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000058430	RatGTEx
Superfamily-SCOP	SSF53335	UniProtKB/Swiss-Prot
UniProt	BN3D2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-15	Bcdin3d	BCDIN3 domain containing RNA methyltransferase	Bcdin3d	BCDIN3 domain containing RNA methyltransfease	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-12-02	Bcdin3d	BCDIN3 domain containing RNA methyltransfease	Bcdin3d	BCDIN3 domain containing	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Bcdin3d	BCDIN3 domain containing	RGD1306433_predicted	similar to RIKEN cDNA 4930556P03 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1306433_predicted	similar to RIKEN cDNA 4930556P03 (predicted)	LOC363001_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC363001_predicted	similar to RIKEN cDNA 4930556P03 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar