Asb2 (ankyrin repeat and SOCS box-containing 2)

Gene: Asb2 (ankyrin repeat and SOCS box-containing 2) Rattus norvegicus

Analyze

Symbol:

Asb2

Name:

ankyrin repeat and SOCS box-containing 2

RGD ID:

1306414

Description:

Predicted to enable cullin family protein binding activity. Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in several processes, including heart development; podosome assembly; and skeletal muscle atrophy. Predicted to act upstream of or within myoblast differentiation; protein polyubiquitination; and skeletal muscle cell differentiation. Predicted to be located in Z disc. Predicted to be part of Cul5-RING ubiquitin ligase complex. Orthologous to human ASB2 (ankyrin repeat and SOCS box containing 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

ankyrin repeat and SOCS box protein 2; ankyrin repeat and SOCS box protein 2-like; ankyrin repeat and SOCS box-containing protein 2; ASB-2; LOC100909439; LOC299266

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	128,239,550 - 128,275,833 (-)	NCBI		GRCr8
mRatBN7.2	6	122,474,754 - 122,511,014 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	122,474,756 - 122,510,854 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	122,615,834 - 122,651,778 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	122,911,098 - 122,947,036 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	122,245,566 - 122,281,575 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	127,212,325 - 127,248,451 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	127,212,273 - 127,248,372 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	136,425,783 - 136,469,502 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	127,609,500 - 127,645,492 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	127,613,248 - 127,649,239 (-)	NCBI
Celera	6	119,956,026 - 119,991,593 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

achondrogenesis type IA (ISO)

DICER1 syndrome (ISO)

genetic disease (ISO)

pleuropulmonary blastoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4,6-trinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

5-azacytidine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

cannabidiol (ISO)

cantharidin (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cobalt atom (ISO)

cobalt dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

dichloroacetic acid (ISO)

diuron (ISO)

doxorubicin (ISO)

fenthion (ISO)

genistein (ISO)

GW 4064 (ISO)

hexadecanoic acid (ISO)

irinotecan (EXP)

lead(0) (ISO)

methapyrilene (ISO)

methidathion (ISO)

Muraglitazar (EXP)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

nitrofen (EXP)

oxaliplatin (EXP)

ozone (ISO)

pentanal (ISO)

progesterone (ISO)

propanal (ISO)

quercetin (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sulforaphane (ISO)

tamibarotene (ISO)

Tesaglitazar (EXP)

tetrachloroethene (ISO)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (EXP)

Tungsten carbide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (ISO,ISS)

cardiac muscle cell development (ISO,ISS)

cardiac muscle cell differentiation (ISO,ISS)

dendritic cell migration (ISO)

heart looping (ISO)

intracellular signal transduction (IEA)

podosome assembly (ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (ISO,ISS)

protein ubiquitination (IBA,IEA,ISO)

skeletal muscle atrophy (ISO,ISS)

skeletal muscle cell differentiation (ISO)

ubiquitin-dependent protein catabolic process (IBA,ISO)

Cellular Component

stress fiber (IEA)

ubiquitin ligase complex (IBA,ISO)

Z disc (ISO)

Molecular Function

cullin family protein binding (ISO)

protein binding (ISO)

ubiquitin protein ligase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:16325183	PMID:19300455	PMID:22147266

Genomics

Comparative Map Data

Asb2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	128,239,550 - 128,275,833 (-)	NCBI		GRCr8
mRatBN7.2	6	122,474,754 - 122,511,014 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	122,474,756 - 122,510,854 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	122,615,834 - 122,651,778 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	122,911,098 - 122,947,036 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	122,245,566 - 122,281,575 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	127,212,325 - 127,248,451 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	127,212,273 - 127,248,372 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	136,425,783 - 136,469,502 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	127,609,500 - 127,645,492 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	127,613,248 - 127,649,239 (-)	NCBI
Celera	6	119,956,026 - 119,991,593 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

ASB2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	93,934,166 - 93,976,570 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	93,934,166 - 93,976,739 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	94,400,512 - 94,442,916 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	93,470,266 - 93,493,520 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	93,470,265 - 93,493,520	NCBI
Celera	14	74,454,282 - 74,477,544 (-)	NCBI		Celera
Cytogenetic Map	14	q32.12	NCBI
HuRef	14	74,580,269 - 74,622,812 (-)	NCBI		HuRef
CHM1_1	14	94,338,550 - 94,381,110 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	88,161,475 - 88,203,881 (-)	NCBI		T2T-CHM13v2.0

Asb2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	103,287,401 - 103,322,260 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	103,287,401 - 103,322,260 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	103,321,142 - 103,356,001 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	103,321,142 - 103,356,001 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	104,559,352 - 104,594,211 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	103,722,192 - 103,757,051 (-)	NCBI		MGSCv36	mm8
Celera	12	104,538,189 - 104,572,686 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	52.9	NCBI

Asb2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	16,005,570 - 16,042,115 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	16,005,570 - 16,041,668 (-)	NCBI	ChiLan1.0	ChiLan1.0

ASB2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	95,091,860 - 95,134,193 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	94,308,365 - 94,350,698 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	74,566,607 - 74,608,905 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	93,900,425 - 93,942,764 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	93,900,914 - 93,930,527 (-)	Ensembl	panpan1.1		panPan2

ASB2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	63,008,206 - 63,051,809 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	63,008,575 - 63,051,581 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	62,585,084 - 62,628,410 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	63,279,448 - 63,322,854 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	63,277,026 - 63,322,847 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	62,957,212 - 63,000,493 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	63,008,327 - 63,051,686 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	63,338,505 - 63,381,859 (-)	NCBI		UU_Cfam_GSD_1.0

Asb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	11,617,225 - 11,653,472 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936733	1,813,548 - 1,849,806 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936733	1,813,569 - 1,849,805 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ASB2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	115,208,700 - 115,258,654 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	115,210,885 - 115,258,863 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	121,998,766 - 122,044,049 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ASB2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	71,687,282 - 71,730,684 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	71,687,238 - 71,730,696 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	58,925,221 - 58,968,980 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Asb2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	10,316,299 - 10,352,515 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	10,317,932 - 10,352,300 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Asb2
213 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	263
Count of miRNA genes:	161
Interacting mature miRNAs:	186
Transcripts:	ENSRNOT00000012045
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	104085867	128713626	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	105156861	140994061	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	106752656	132339866	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	112636280	140994061	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	116506292	130245370	Rat

Markers in Region

BG375800

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	122,487,793 - 122,487,893 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	127,225,365 - 127,225,464	NCBI	Rnor6.0
Rnor_5.0	6	136,438,858 - 136,438,957	UniSTS	Rnor5.0
RGSC_v3.4	6	127,622,540 - 127,622,639	UniSTS	RGSC3.4
Celera	6	119,969,098 - 119,969,197	UniSTS
RH 3.4 Map	6	843.79	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH139118

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	122,500,833 - 122,500,983 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	127,238,227 - 127,238,376	NCBI	Rnor6.0
Rnor_5.0	6	136,453,502 - 136,453,651	UniSTS	Rnor5.0
Rnor_5.0	6	136,451,522 - 136,451,671	UniSTS	Rnor5.0
RGSC_v3.4	6	127,635,425 - 127,635,574	UniSTS	RGSC3.4
Celera	6	119,981,896 - 119,982,045	UniSTS
RH 3.4 Map	6	840.19	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH136912

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	122,474,775 - 122,474,988 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	128,984,736 - 128,984,948	NCBI	Rnor6.0
Rnor_6.0	6	127,212,347 - 127,212,559	NCBI	Rnor6.0
Rnor_5.0	6	138,181,837 - 138,182,049	UniSTS	Rnor5.0
Rnor_5.0	6	136,425,805 - 136,426,017	UniSTS	Rnor5.0
RGSC_v3.4	6	127,609,522 - 127,609,734	UniSTS	RGSC3.4
Celera	6	119,956,048 - 119,956,260	UniSTS
RH 3.4 Map	6	841.9	UniSTS
Cytogenetic Map	6	q32	UniSTS
Cytogenetic Map	12	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	43			6		8	11			12	5	8
Low	1		35	20	13	20			64	35	29	6
Below cutoff			22	21		21			10

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112072	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063261766	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_593075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC133316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000085517 ⟹ ENSRNOP00000071182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	122,474,756 - 122,510,854 (-)	Ensembl
Rnor_6.0 Ensembl	6	127,212,273 - 127,248,372 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085943 ⟹ ENSRNOP00000070875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	128,985,453 - 128,989,812 (-)	Ensembl

RefSeq Acc Id:

NM_001011984 ⟹ NP_001011984

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	128,239,550 - 128,275,650 (-)	NCBI
mRatBN7.2	6	122,474,754 - 122,510,854 (-)	NCBI
Rnor_6.0	6	127,212,325 - 127,248,247 (-)	NCBI
Rnor_5.0	6	136,425,783 - 136,469,502 (-)	NCBI
RGSC_v3.4	6	127,609,500 - 127,645,492 (-)	RGD
Celera	6	119,956,026 - 119,991,593 (-)	RGD

Sequence:

show sequence

CTCAGGGCCAGCACAGGAGGCAAACTCAGAGAGCATGTTCTGAAGTCAGACAGTCAAGAGAATC
TCTTTGTTGCCTAGACCTGTGCCCCTGCCACAGAGCCTCGCAGGGACTGGTCACCTGCCGTGTG
CTGGCTGCTGCTGAGTCACTCTTCTGGAAGCTGGGGCAGAGGTGGCCAAGATGTCGACTGAGAT
CTCCACTCGGGGCAGACAGCGTGCCATTGGGCATGAGGAATACAGCCTGTACAGCAGCTTGAGT
GAGGAGGAGCTGGTCCAGATGGCCATTGAGCAGAGCCTGGCAGACAAGACTCGGGGCCCAACCC
CTGCTGAGACCTCTGTGTCCTCTCAGACCAACCACCAGCCAGGCCATATCCACCCATGGACCAG
GTCCTCCTCTCCTCCCGAGAGCCCACCGGCCCGAGCACCCCTGGGCCTGTTCCAAGGGGTCATG
CAGAAGTATAGCAGCAACCTGTTCAAGACCTCCCAGATGGCGGCTATGGACCCCGTGCTGAAGG
CCATCAAGGAAGGGGATGAAGAAGCCTTGAAGGCCATGATCCAGGATGGGAAGAATCTTGCAGA
GCCCAACAAGGAGGGCTGGCTGCCGCTTCACGAGGCTGCCTACTATGGCAAGCTGGGCTGCCTG
AAAGTCCTGCAACGAGCTTACCCAGGGACCATTGACCAGCGTACACTGCAGGAAGAGACAGCAC
TATACCTGGCTACGTGCAGAGAACACCTGGACTGCCTCCTGTCCCTGCTCCAGGCGGGGGCAGA
GCCTGACATCTCTAACAAATCCAGGGAGACCCCACTTTACAAAGCCTGTGAGCGCAAGAACGCG
GAGGCCGTGAGGATATTGGTGCAATACAATGCAGACGCCAACCACCGCTGCAACAGGGGCTGGA
CGGCCCTGCATGAGTCTGTCTCACGCAATGACCTGGAGGTCATGGAGATCCTAGTGAGCGGCGG
GGCCAAGGTGGAAGCCAAGAACGTCTACAGCATTACCCCCTTGTTTGTGGCTGCCCAGAGCGGG
CAGCTGGAGGCCCTGAGGTTCCTGGCCAAGCATGGTGCAGACATCAACACGCAGGCCAGCGACA
GCGCGTCCGCCCTCTACGAGGCCTGCAAGAACGAGCATGAAGACGTGGTGGAGTTTCTTCTCTC
GCAGGGCGCCGACGCTAACAAAGCCAACAAGGACGGCTTGCTTCCACTGCACGTTGCCTCCAAG
AAGGGCAATTATAGAATAGTGCAGATGCTGTTGCCTGTGACCAGCCGCACGCGCGTGCGCCGTA
GCGGCATCAGCCCGCTGCACCTGGCGGCCGAGCGCAACCACGACGCGGTGCTGGAGGCGCTGCT
GGCCGCGCGCTTCGACGTGAACACGCCTCTGGCTCCCGAGCGCGCGCGCCTCTACGAGGACCGC
CGCACTTCAGCGCTCTACTTCGCCGTGGTCAACAACAATGTGTACGCCACGGAGTTGTTGCTGC
TGGCGGGCGCCGACCCCAACCGCGACGTCATCAGCCCCCTGCTCGTGGCCATCCGCCACGGCTG
CCTGCGCACCATGCAGCTGCTGTTGGACCATGGTGCAAACATCGACGCCTACATCGCCACTCAC
CCCACTGCCTTCCCGGCCACCATCATGTTTGCCATGAAGTGCCTTTCGTTACTCAAGTTCCTCA
TGGACCTCGGTTGCGATGGCGAGCCCTGCTTTTCCTGCCTGTATGGCAACGGGCCACACCCACC
TGCCCCACGATCCGGCCGCTTCAACGACGCGCCCGTGGACGACAAGGCACCCAGCGTGGTGCAG
TTCTGTGAGTTCCTGTCGGCCCCGGAAGTGAGCCGCTGGGCGGGACCCATCATCGATGTCCTTC
TGGACTATGTCGGCAACGTGCAGCTGTGCTCCCGGCTGAAGGAGCACATCGACAGCTTTGAGGA
CTGGGCTGTCATCAAGGAGAAGGCAGAACCTCCAAGACCTCTGGCTCACCTCTGCCGGCTGCGG
GTTCGGAAGGCCATAGGGAAATACCGGATAAAACTCCTGGACACACTGCCCCTCCCGGGCAGGC
TAATCAGATACCTGAAATACGAGAATACACAGTAACCAGCCTGGAGAGAAGGTGTGGCCTTCAG
ACTGTTTCCTCGACACCCCAGGCGGCCTGCCTCCAGGCCCCGCTGGGGTCAGAACAAGTGTGGT
CCTCCTGGGTCTCTACTAGAGCTTCGCTGGAAGTAAGAGCCGATGTGCGGAGTGGAGATGGCGC
CTCAGCTTTCAAACTGTTCTGTGGATGGCAGACCTGCTCTCCTGGCCGTAGCCAGGGACCGTCA
ACCTGGGGTCAGGGAAGAGCTGCTCTGGGCAAGGTGGCCCAGGCAGGAATCTTGGCCTCACGCT
GGAGAACTTCTAGGAATGAGTTCACCTAGGGATCCTCACTGGACTCTGAGCTTTCAGGCTGGGA
GGGGGAGCCCCGCCTGAGTACATCATTGAGTACAATAAACATTGTATACGGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240464 ⟹ XP_006240526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	128,240,416 - 128,257,624 (-)	NCBI
mRatBN7.2	6	122,474,754 - 122,492,828 (-)	NCBI
Rnor_6.0	6	127,212,325 - 127,230,486 (-)	NCBI
Rnor_5.0	6	136,425,783 - 136,469,502 (-)	NCBI

Sequence:

show sequence

GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTTGACTTTCACTCCCATTCATCCTCCTT
GTGTCTCCCCATACCACCTCCAGGGGTTCATCTGTGCACATCTAAGTCTCCACCCAGGACCCTT
CATTTAAGGGCCAGGTGCCAAAGCCCAGAACTAATCGATTAACCGGGGCCAAGGGAGAGGGTTC
TGCCTCGGGTATGGTGCCGATGGGATATTTGTGCCTCCCTCCTTGCTCTGGCTCAGAGTGGCCT
TAAAAGCACTTAAAAGGGAAAAAGGGGGCCCTTTGCTGGTACCCCATTTCTGTGTGGCAGAGAG
GAGGATACAGTTCTCATTCTCAGCCTCTCCAAGCCCTATGGGCACCACATTGTCCTTGGGACTT
TGGGGTTGACAAAAAAAGAAAGTTCCAGTTCTAATCTGGGTACAACTGCCTATCCCTGCATGTC
TGTCACAGGACACCCCACTCCCCCGCTCCTCCCCCACCGCCAGTCTCCCTTTTCTGCAAGGCAG
GGTTGGGGAAGACAAAGCTGTCTCCCAAGGCCCTGTGCACCTTGCTTCTAGTCTTTGGTGGTTT
AACATGCCTAGCAGCCTCTCCCTCTTTGAGGTGGGGACTTTGTCTCAGCTCCTGGGGAGGCTCT
TAGTGTGTATGAGACACTGAGAGTCCCAGGATGTGTGAACCCCAGCTGGGGAGACCCATCTGGC
TGGTGGGCCTGGACATCAAGTATTACATCGTGGGAACCTCTCCTCACCGAGGCCACAGGACCAG
CCAGCCCATTCCCCTCCACTTCAGCCGTGGCCACATACCCCATGGGACCCTCCCTGAGACTGAT
GGAGGGCTATGGACCCCGTGCTGAAGGCCATCAAGGAAGGGGATGAAGAAGCCTTGAAGGCCAT
GATCCAGGATGGGAAGAATCTTGCAGAGCCCAACAAGGAGGGCTGGCTGCCGCTTCACGAGGCT
GCCTACTATGGCAAGCTGGGCTGCCTGAAAGTCCTGCAACGAGCTTACCCAGGGACCATTGACC
AGCGTACACTGCAGGAAGAGACAGCACTATACCTGGCTACGTGCAGAGAACACCTGGACTGCCT
CCTGTCCCTGCTCCAGGCGGGGGCAGAGCCTGACATCTCTAACAAATCCAGGGAGACCCCACTT
TACAAAGCCTGTGAGCGCAAGAACGCGGAGGCCGTGAGGATATTGGTGCAATACAATGCAGACG
CCAACCACCGCTGCAACAGGGGCTGGACGGCCCTGCATGAGTCTGTCTCACGCAATGACCTGGA
GGTCATGGAGATCCTAGTGAGCGGCGGGGCCAAGGTGGAAGCCAAGAACGTCTACAGCATTACC
CCCTTGTTTGTGGCTGCCCAGAGCGGGCAGCTGGAGGCCCTGAGGTTCCTGGCCAAGCATGGTG
CAGACATCAACACGCAGGCCAGCGACAGCGCGTCCGCCCTCTACGAGGCCTGCAAGAACGAGCA
TGAAGACGTGGTGGAGTTTCTTCTCTCGCAGGGCGCCGACGCTAACAAAGCCAACAAGGACGGC
TTGCTTCCACTGCACGTTGCCTCCAAGAAGGGCAATTATAGAATAGTGCAGATGCTGTTGCCTG
TGACCAGCCGCACGCGCGTGCGCCGTAGCGGCATCAGCCCGCTGCACCTGGCGGCCGAGCGCAA
CCACGACGCGGTGCTGGAGGCGCTGCTGGCCGCGCGCTTCGACGTGAACACGCCTCTGGCTCCC
GAGCGCGCGCGCCTCTACGAGGACCGCCGCACTTCAGCGCTCTACTTCGCCGTGGTCAACAACA
ATGTGTACGCCACGGAGTTGTTGCTGCTGGCGGGCGCCGACCCCAACCGCGACGTCATCAGCCC
CCTGCTCGTGGCCATCCGCCACGGCTGCCTGCGCACCATGCAGCTGCTGTTGGACCATGGTGCA
AACATCGACGCCTACATCGCCACTCACCCCACTGCCTTCCCGGCCACCATCATGTTTGCCATGA
AGTGCCTTTCGTTACTCAAGTTCCTCATGGACCTCGGTTGCGATGGCGAGCCCTGCTTTTCCTG
CCTGTATGGCAACGGGCCACACCCACCTGCCCCACGATCCGGCCGCTTCAACGACGCGCCCGTG
GACGACAAGGCACCCAGCGTGGTGCAGTTCTGTGAGTTCCTGTCGGCCCCGGAAGTGAGCCGCT
GGGCGGGACCCATCATCGATGTCCTTCTGGACTATGTCGGCAACGTGCAGCTGTGCTCCCGGCT
GAAGGAGCACATCGACAGCTTTGAGGACTGGGCTGTCATCAAGGAGAAGGCAGAACCTCCAAGA
CCTCTGGCTCACCTCTGCCGGCTGCGGGTTCGGAAGGCCATAGGGAAATACCGGATAAAACTCC
TGGACACACTGCCCCTCCCGGGCAGGCTAATCAGATACCTGAAATACGAGAATACACAGTAACC
AGCCTGGAGAGAAGGTGTGGCCTTCAGACTGTTTCCTCGACACCCCAGGCGGCCTGCCTCCAGG
CCCCGCTGGGGTCAGAACAAGTGTGGTCCTCCTGGGTCTCTACTAGAGCTTCGCTGGAAGTAAG
AGCCGATGTGCGGAGTGGAGATGGCGCCTCAGCTTTCAAACTGTTCTGTGGATGGCAGACCTGC
TCTCCTGGCCGTAGCCAGGGACCGTCAACCTGGGGTCAGGGAAGAGCTGCTCTGGGCAAGGTGG
CCCAGGCAGGAATCTTGGCCTCACGCTGGAGAACTTCTAGGAATGAGTTCACCTAGGGATCCTC
ACTGGACTCTGAGCTTTCAGGCTGGGAGGGGGAGCCCCGCCTGAGTACATCATTGAGTACAATA
AACATTGTATACGGAA

hide sequence

RefSeq Acc Id:

XM_039112072 ⟹ XP_038968000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	128,240,416 - 128,275,833 (-)	NCBI
mRatBN7.2	6	122,475,322 - 122,511,013 (-)	NCBI

RefSeq Acc Id:

XM_063261766 ⟹ XP_063117836

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	128,240,416 - 128,275,833 (-)	NCBI

RefSeq Acc Id:

XR_593075

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	128,242,433 - 128,275,833 (-)	NCBI
mRatBN7.2	6	122,477,633 - 122,511,014 (-)	NCBI
Rnor_6.0	6	127,215,288 - 127,248,451 (-)	NCBI

Sequence:

show sequence

TCTGAAGCGGGAGCCTGTCTCCCGTGCCCCCGGAGGAGTGGAGGGCGGGATCACAGCTTCCTTA
GTGCAATCTTCAGAAGGGAAATCTGAGAGTCATAACGTCTTATAGCTTGGCTTGACATCCCTGG
TCATGCGGTGGGCCCGAAATAAACTCCCTGCTTCAAAGGAGAATGTTTCAGAGCTGCCTGGCAC
AACAGCTGGAAGCTCAGGGCCAGCACAGGAGGCAAACTCAGAGAGCATGTTCTGAAGTCAGACA
GTCAAGAGAATCTCTTTGTTGCCTAGACCTGTGCCCCTGCCACAGAGCCTCGCAGGGACTGGTC
ACCTGCCGTGTGCTGGCTGCTGCTGAGTCACTCTTCTGGAAGCTGGGGCAGAGGTGGCCAAGAT
GTCGACTGAGATCTCCACTCGGGGCAGACAGCGTGCCATTGGGCATGAGGAATACAGCCTGTAC
AGCAGCTTGAGTGAGGAGGAGCTGGTCCAGATGGCCATTGAGCAGAGCCTGGCAGACAAGACTC
GGGGCCCAACCCCTGCTGAGACCTCTGTGTCCTCTCAGACCAACCACCAGCCAGGCCATATCCA
CCCATGGACCAGGTCCTCCTCTCCTCCCGAGAGCCCACCGGCCCGAGCACCCCTGGGCCTGTTC
CAAGGGGTCATGCAGAAGTATAGCAGCAACCTGTTCAAGACCTCCCAGATGGCGGCTATGGACC
CCGTGCTGAAGGCCATCAAGGAAGGGGATGAAGAAGCCTTGAAGGCCATGATCCAGGATGGGAA
GAATCTTGCAGAGCCCAACAAGGAGGGCTGGCTGCCGCTTCACGAGGCTGCCTACTATGGCAAG
CTGGGCTGCCTGAAAGTCCTGCAACGAGCTTACCCAGGGACCATTGACCAGCGTACACTGCAGG
AAGAGACAGCACTATACCTGGCTACGTGCAGAGAACACCTGGACTGCCTCCTGTCCCTGCTCCA
GGCGGGGGCAGAGCCTGACATCTCTAACAAATCCAGGGAGACCCCACTTTACAAAGCCTGTGAG
CGCAAGAACGCGGAGGCCGTGAGGATATTGGTGCAATACAATGCAGACGCCAACCACCGCTGCA
ACAGGGGCTGGACGGCCCTGCATGAGTCTGTCTCACGCAATGACCTGGAGGTCATGGAGATCCT
AGTGAGCGGCGGGGCCAAGGTGGAAGCCAAGAACGTCTACAGCATTACCCCCTTGTTTGTGGCT
GCCCAGAGCGGGCAGCTGGAGGCCCTGAGGTTCCTGGCCAAGCATGGTGCAGACATCAACACGC
AGGCCAGCGACAGCGCGTCCGCCCTCTACGAGGCCTGCAAGAACGAGCATGAAGACGTGGTGGA
GTTTCTTCTCTCGCAGGGCGCCGACGCTAACAAAGCCAACAAGGACGGCTTGCTTCCACTGCAC
GTTGCCTCCAAGAAGGGCAATTATAGAATAGTGCAGATGCTGTTGCCTGTGACCAGCCGCACGC
GCGTGCGCCGTAGCGGCATCAGCCCGCTGCACCTGGCGGCCGAGCGCAACCACGACGCGGTGCT
GGAGGCGCTGCTGGCCGCGCGCTTCGACGTGAACACGCCTCTGGCTCCCGAGCGCGCGCGCCTC
TACGAGGACCGCCGCACTTCAGCGCTCTACTTCGCCGTGGTCAACAACAATGTGTACGCCACGG
AGTTGTTGCTGCTGGCGGGCGCCGACCCCAACCGCGACGTCATCAGCCCCCTGCTCGTGGCCAT
CCGCCACGGCTGCCTGCGCACCATGCAGCTGCTGTTGGACCATGGTGCAAACATCGACGCCTAC
ATCGCCACTCACCCCACTGCCTTCCCGGCCACCATCATGTTTGCCATGAAGTGCCTTTCGTTAC
TCAAGTTCCTCATGGACCTCGGTTGCGATGGCGAGCCCTGCTTTTCCTGCCTGTATGGCAACGG
GCCACACCCACCTGCCCCACGATCCGGCCGCTTCAACGACGCGCCCGTGGACGACAAGGCACCC
AGCGTGGTGCAGCAACCACCAGGCAAGGCTTGTCTACTGCATACAAAGCATTCATGTTCCTAAA
ATTCTCCTTGGAGTGGAATGCCATAGACCCCATTTACGGACAAGGAAATGGAAACGCAGAGAAG
CGATGGGGCCAGCCCAACTTGTCCGTCTTGCATGTCAGTTCTGTGAGTTCCTGTCGGCCCCGGA
AGTGAGCCGCTGGGCGGGACCCATCATCGAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001011984	(Get FASTA)	NCBI Sequence Viewer
	XP_006240526	(Get FASTA)	NCBI Sequence Viewer
	XP_038968000	(Get FASTA)	NCBI Sequence Viewer
	XP_063117836	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85882	(Get FASTA)	NCBI Sequence Viewer
	EDL81768	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071182
	ENSRNOP00000071182.1
GenBank Protein	Q5U2S6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001011984 ⟸ NM_001011984

- UniProtKB:

Q5U2S6 (UniProtKB/Swiss-Prot), A6JEM4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTEISTRGRQRAIGHEEYSLYSSLSEEELVQMAIEQSLADKTRGPTPAETSVSSQTNHQPGHI
HPWTRSSSPPESPPARAPLGLFQGVMQKYSSNLFKTSQMAAMDPVLKAIKEGDEEALKAMIQDG
KNLAEPNKEGWLPLHEAAYYGKLGCLKVLQRAYPGTIDQRTLQEETALYLATCREHLDCLLSLL
QAGAEPDISNKSRETPLYKACERKNAEAVRILVQYNADANHRCNRGWTALHESVSRNDLEVMEI
LVSGGAKVEAKNVYSITPLFVAAQSGQLEALRFLAKHGADINTQASDSASALYEACKNEHEDVV
EFLLSQGADANKANKDGLLPLHVASKKGNYRIVQMLLPVTSRTRVRRSGISPLHLAAERNHDAV
LEALLAARFDVNTPLAPERARLYEDRRTSALYFAVVNNNVYATELLLLAGADPNRDVISPLLVA
IRHGCLRTMQLLLDHGANIDAYIATHPTAFPATIMFAMKCLSLLKFLMDLGCDGEPCFSCLYGN
GPHPPAPRSGRFNDAPVDDKAPSVVQFCEFLSAPEVSRWAGPIIDVLLDYVGNVQLCSRLKEHI
DSFEDWAVIKEKAEPPRPLAHLCRLRVRKAIGKYRIKLLDTLPLPGRLIRYLKYENTQ

hide sequence

RefSeq Acc Id:

XP_006240526 ⟸ XM_006240464

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDPVLKAIKEGDEEALKAMIQDGKNLAEPNKEGWLPLHEAAYYGKLGCLKVLQRAYPGTIDQRT
LQEETALYLATCREHLDCLLSLLQAGAEPDISNKSRETPLYKACERKNAEAVRILVQYNADANH
RCNRGWTALHESVSRNDLEVMEILVSGGAKVEAKNVYSITPLFVAAQSGQLEALRFLAKHGADI
NTQASDSASALYEACKNEHEDVVEFLLSQGADANKANKDGLLPLHVASKKGNYRIVQMLLPVTS
RTRVRRSGISPLHLAAERNHDAVLEALLAARFDVNTPLAPERARLYEDRRTSALYFAVVNNNVY
ATELLLLAGADPNRDVISPLLVAIRHGCLRTMQLLLDHGANIDAYIATHPTAFPATIMFAMKCL
SLLKFLMDLGCDGEPCFSCLYGNGPHPPAPRSGRFNDAPVDDKAPSVVQFCEFLSAPEVSRWAG
PIIDVLLDYVGNVQLCSRLKEHIDSFEDWAVIKEKAEPPRPLAHLCRLRVRKAIGKYRIKLLDT
LPLPGRLIRYLKYENTQ

hide sequence

RefSeq Acc Id:

ENSRNOP00000071182 ⟸ ENSRNOT00000085517

RefSeq Acc Id:	XP_038968000 ⟸ XM_039112072
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSRNOP00000070875 ⟸ ENSRNOT00000085943

RefSeq Acc Id:	XP_063117836 ⟸ XM_063261766
- Peptide Label:	isoform X1

Protein Domains

SOCS box UIM

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JZ15-F1-model_v2	AlphaFold	A0A0G2JZ15	1-277	view protein structure
AF-Q5U2S6-F1-model_v2	AlphaFold	Q5U2S6	1-634	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694790

Promoter ID:

EPDNEW_R5315

Type:

multiple initiation site

Name:

Asb2_1

Description:

ankyrin repeat and SOCS box-containing 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	127,248,260 - 127,248,320	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306414	AgrOrtholog
BioCyc Gene	G2FUF-36419	BioCyc
Ensembl Genes	ENSRNOG00000051619	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00000057803	Ensembl
Ensembl Transcript	ENSRNOT00000085517	ENTREZGENE
	ENSRNOT00000085517.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.25.40.20	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOCS box	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7191983	IMAGE-MGC_LOAD
InterPro	Ankyrin_rpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ankyrin_rpt-contain_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ASB2_SOCS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOCS_box	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOCS_box-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:299266	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:94662	IMAGE-MGC_LOAD
NCBI Gene	299266	ENTREZGENE
PANTHER	MOLTING PROTEIN MLT-4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Ank_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ank_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ank_4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOCS_box	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Asb2	PhenoGen
PRINTS	ANKYRIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	ANK_REP_REGION	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ANK_REPEAT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOCS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000051619	RatGTEx
	ENSRNOG00000057803	RatGTEx
SMART	ANK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOCS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SOCS_box	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Ankyrin repeat	UniProtKB/TrEMBL
	SOCS box-like	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
	SSF48403	UniProtKB/Swiss-Prot
UniProt	A6JEM4	ENTREZGENE, UniProtKB/TrEMBL
	ASB2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Asb2	ankyrin repeat and SOCS box-containing 2	LOC100909439	ankyrin repeat and SOCS box protein 2-like	Data merged from RGD:6503583	737654	PROVISIONAL
2012-07-05	LOC100909439	ankyrin repeat and SOCS box protein 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-09-25	Asb2	ankyrin repeat and SOCS box-containing 2	Asb2	ankyrin repeat and SOCS box-containing protein 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Asb2	ankyrin repeat and SOCS box-containing protein 2	Asb2_predicted	ankyrin repeat and SOCS box-containing protein 2 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Asb2_predicted	ankyrin repeat and SOCS box-containing protein 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar