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Gene: Chpf2 (chondroitin polymerizing factor 2) Rattus norvegicus

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Symbol:

Chpf2

Name:

chondroitin polymerizing factor 2

RGD ID:

1306404

Description:

Predicted to enable glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate proteoglycan biosynthetic process. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi apparatus. Orthologous to human CHPF2 (chondroitin polymerizing factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

chondroitin sulfate glucuronyltransferase; hypothetical protein LOC296733; LOC296733; RGD1306404; similar to mKIAA1402 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CHPF2 (chondroitin polymerizing factor 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Chpf2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Chpf2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CHPF2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CHPF2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Chpf2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CHPF2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Chpf2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Chpf2 (chondroitin polymerizing factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC66A2 (solute carrier family 66 member 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Chpf2 (chondroitin polymerizing factor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Chpf2 (chondroitin polymerizing factor 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CHPF2 (chondroitin polymerizing factor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CHPF2 (chondroitin polymerizing factor 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	chpf2 (chondroitin polymerizing factor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG43313	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG43313	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mig-22	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	chpf2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	chpf2	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	LOC116406871	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	11,470,917 - 11,479,096 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	11,472,908 - 11,478,370 (-)	Ensembl				GRCr8
mRatBN7.2	4	10,578,470 - 10,585,940 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	10,580,462 - 10,585,916 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	15,726,555 - 15,732,017 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	11,546,753 - 11,552,215 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	9,898,535 - 9,903,997 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	7,108,461 - 7,113,940 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	7,108,462 - 7,113,919 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	7,120,974 - 7,126,445 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	5,959,923 - 5,965,385 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	6,196,444 - 6,201,906 (-)	NCBI		Celera
RGSC_v3.1	4	5,960,045 - 5,964,194 (-)	NCBI
Cytogenetic Map	4	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aristolochic acid A (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

cobalt dichloride (EXP,ISO)

copper(II) chloride (ISO)

cyclosporin A (ISO)

doxorubicin (ISO)

endosulfan (EXP)

flutamide (EXP)

FR900359 (ISO)

gentamycin (EXP)

glafenine (EXP)

GSK-J4 (ISO)

ketamine (EXP)

maneb (ISO)

menadione (ISO)

methimazole (EXP)

nefazodone (EXP)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP)

paraquat (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propiconazole (EXP)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

tetraphene (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chondroitin sulfate proteoglycan biosynthetic process (IEA,ISO)

Cellular Component

Golgi apparatus (IEA,ISO)

Golgi cisterna membrane (IEA)

Molecular Function

acetylgalactosaminyltransferase activity (IEA)

glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (IEA)

N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity (IEA,ISO)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19946888

Genomics

Comparative Map Data

Chpf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	11,470,917 - 11,479,096 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	11,472,908 - 11,478,370 (-)	Ensembl				GRCr8
mRatBN7.2	4	10,578,470 - 10,585,940 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	10,580,462 - 10,585,916 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	15,726,555 - 15,732,017 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	11,546,753 - 11,552,215 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	9,898,535 - 9,903,997 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	7,108,461 - 7,113,940 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	7,108,462 - 7,113,919 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	7,120,974 - 7,126,445 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	5,959,923 - 5,965,385 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	6,196,444 - 6,201,906 (-)	NCBI		Celera
RGSC_v3.1	4	5,960,045 - 5,964,194 (-)	NCBI
Cytogenetic Map	4	q11	NCBI

CHPF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	151,232,483 - 151,238,822 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	151,232,483 - 151,240,979 (+)	Ensembl			hg38	GRCh38
GRCh37	7	150,929,569 - 150,935,908 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	150,560,518 - 150,566,838 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	145,486,944 - 145,493,264 (+)	NCBI		Celera
Cytogenetic Map	7	q36.1	NCBI
HuRef	7	144,741,123 - 144,747,445 (+)	NCBI		HuRef
CHM1_1	7	150,937,986 - 150,944,308 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	152,405,601 - 152,411,942 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	150,259,122 - 150,265,442 (+)	NCBI

Chpf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	24,788,950 - 24,799,396 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	24,782,419 - 24,790,054 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm39 Ensembl	5	24,791,739 - 24,799,554 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	24,586,744 - 24,594,398 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	24,586,741 - 24,594,556 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	24,092,568 - 24,098,305 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
Celera	5	21,536,356 - 21,542,131 (+)	NCBI		Celera
Cytogenetic Map	5	A3	NCBI
cM Map	5	11.93	NCBI

Chpf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955491	5,648,044 - 5,653,158 (+)	Ensembl
ChiLan1.0	NW_004955491	5,649,079 - 5,653,158 (+)	NCBI	ChiLan1.0	ChiLan1.0

CHPF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	187,653,180 - 187,660,780 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	39,663,366 - 39,671,051 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	142,818,243 - 142,825,718 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	154,971,194 - 154,977,557 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	154,971,194 - 154,977,557 (+)	Ensembl			panPan2	panpan1.1

CHPF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ROS_Cfam_1.0	16	16,989,604 - 17,001,555 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	16,995,776 - 17,004,841 (+)	Ensembl				ROS_Cfam_1.0 Ensembl

Chpf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	6,258,376 - 6,265,991 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936527	6,637,480 - 6,646,985 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936527	6,637,563 - 6,643,051 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CHPF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	119,417,357 - 119,423,601 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	119,418,793 - 119,423,455 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666072	15,389,156 - 15,394,446 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Chpf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624800	5,406,553 - 5,412,266 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624800	5,406,606 - 5,412,396 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Chpf2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	153,785,547 - 153,791,053 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Chpf2
59 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	43
Count of miRNA genes:	42
Interacting mature miRNAs:	43
Transcripts:	ENSRNOT00000014082
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	32668025	Rat
724557	Plsm1	Polydactyly-luxate syndrome (PLS) morphotypes QTL 1		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	4	1	28392287	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	32668025	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	11038706	56038706	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	34142783	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	34142783	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	11038706	56038706	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5894575	57613242	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	11038706	56038706	Rat
61333	Gluco16	Glucose level QTL 16	4.3	0.00001	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	1	31106810	Rat
61408	Scl23	Serum cholesterol level QTL 23		0.0005	blood HDL phospholipid amount (VT:0010504)	serum high density lipoprotein phospholipid level (CMO:0001567)	4	1	28392287	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	1	45429897	Rat
8552803	Bw144	Body weight QTL 144	16		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	11038706	56038706	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	32668025	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	11038706	56038706	Rat
61351	Bp33	Blood pressure QTL 33		0.0018	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	1	28392287	Rat
61415	Eae11	Experimental allergic encephalomyelitis QTL 11	2.9		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	1	40471598	Rat
1641905	Colcr1	Colorectal carcinoma resistance QTL 1	4.3	0.0003	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	4	8428551	30449094	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5889999	50889999	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	33538816	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	11038706	56038706	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	32668025	Rat
1300141	Bp178	Blood pressure QTL 178			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	10758701	40490708	Rat

Markers in Region

G33154

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	10,580,603 - 10,580,746 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	7,108,604 - 7,108,746	NCBI	Rnor6.0
Rnor_5.0	4	7,121,121 - 7,121,263	UniSTS	Rnor5.0
RGSC_v3.4	4	5,960,066 - 5,960,208	UniSTS	RGSC3.4
Celera	4	6,196,587 - 6,196,729	UniSTS
Cytogenetic Map	4	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106574	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010065615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC099360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014082 ⟹ ENSRNOP00000014082

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	11,472,908 - 11,478,370 (-)	Ensembl
mRatBN7.2 Ensembl	4	10,580,465 - 10,585,200 (-)	Ensembl
Rnor_6.0 Ensembl	4	7,108,462 - 7,113,919 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	7,109,741 - 7,111,097 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095920 ⟹ ENSRNOP00000093802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	10,580,462 - 10,585,916 (-)	Ensembl

RefSeq Acc Id:

NM_001106574 ⟹ NP_001100044

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	11,472,908 - 11,478,370 (-)	NCBI
mRatBN7.2	4	10,580,461 - 10,585,923 (-)	NCBI
Rnor_6.0	4	7,108,461 - 7,113,923 (-)	NCBI
Rnor_5.0	4	7,120,974 - 7,126,445 (-)	NCBI
RGSC_v3.4	4	5,959,923 - 5,965,385 (-)	RGD
Celera	4	6,196,444 - 6,201,906 (-)	RGD

Sequence:

show sequence

AGAGGAAGCCGAGGGCTGGGCTGTGAGGTGGCAGTGGCTGCAAAGCGGAGCTCCTCGCCCGGCA
GCAGGGTGGGCTCACCTGCGAGGCGGCTCCGTCGGCTGTGGGGTTTGGGTGTTCCTGTCCCCCT
GACCGGCATGACCTGAGAACCCGCTCGGTCTTACTCTACGCCGCGAGCTCCCTTCCGCCGCTCG
AGTTCTCAGAGCAAACCAGCTGGACGCCGGGCCTTCTCTGCAGTCGCGGGACTAATTTCTCTGC
AGTAGGCGATTAATTTCTGTCTCCAGACGGCCGGCTAGGACTCGCTCTGTGCCTCCTGAGGGCT
GGCACGGGGCTGTGGTCGCCAAGGGAATAATAGGGCACTGACTGGCGCAGGCAGGTGTCCTGTT
GGAAGGTGGTGAGCCTCTACTGGCCTTCCCAGACCCCGCGTTTCTGTAACTGCTGCTGTCTCTC
GGGTTGCTTTTGCTTTATTTGGCTTTGTTTGATAACCTCTAGCCACAGCAAGAGTGTCTGTAAT
TTTGTCTCCTGCTGCTCTTCGAAATGTGGGCAGCATAGCTTTGCAGGACGAGTAGGATGGCCAG
CAAAATGGTTCCATCAGCCATTGCTCTCCTCTGAGAGGCCAGCAGTGCTGAGTCACTGTGACTG
TTCACCTCATTTGGGTGGGCAGGTGGGTGGGCACCATGCATGGTTGGTGATCTTATCTGACAAG
GAGGGCATTTCTAGAGTCTGTGGATTTCTTTGACACTCAGGAGCAGGGTGGAAGGAGGCGCTGA
CCCCTTCTCAAGTGCTAGCCTGCAGCCGCAGTAAGTCAGCAGTCCCTTCTGGGGCCTGAAGAGA
CATAGTGGGCCAGGATATCTGCAGGATAGGATAGGGCGGCAGAGGCAGGCCCTTTAGGTCAGAC
TGCTGTTTGAATAGTGCATGCACTTTACCCTGCCTGGGTCATCGGGTGCTGCTGACTTGAATTA
GGCCCATGCTTCAAATGGCTGTAGACCTTTTAGGGTTAGGCTTGGCAGTGTTGTACTTTCTTTT
TTCTTTTTACTGGACTACAGACTGCATTCCTAGTAGTGAGTGGCATTGTTCACACAGACATTAG
TGTTTTATTGAGGAGTGTATCACTCATGGCCACCGAAGACCAGACGTAGGGAGTTGGGAAGACT
TTGTGGGGATGCTGGGCCTGAAAGTCGACACACATTGCTCCTTTCTCTGTTGCTGACCTCATTG
ACTCCAGGTTCTCTGGCTAAAACCGTGGGACAACTGCTGGCCTGGGGCCCATCAACCTACTAAT
CCCTGAGACTGTGCCCCTGGGGCACCCTGTGTCAGGGCCTGCCACCATGCGGCTGAGCTCCCTG
CTGGCCGTGCTACGGCCAATGCTCCCCCTCATCCTGGGACTGTCTCTGGGATGCAGCCTGAGCC
TCCTTCGGGTTTCCTGGATCCAGGGTGAGGGAGAAGATCCCTGTGTAGAGGCTGTGGGGAAGCC
AGGAGGGCCACAGAATCCAGACTTGAAACACGGGCTGGACCAAAGCGATGAAGACTTCAAACCT
AGGATTGTCCCCTACTACAGGGACCCTAACAAGCATTACAAGAAGGTGCTCAGGACTCGGTATA
TACAGACAGAGCTGGGCTCCCGTGAGCGCTTGCTGGTGGCTGTCCTGACTTCTCGAGCCACACT
ATCTACCCTGGCCGTCGCTGTTAACCGTACAGTGGCACATCACTTCCCTCGGTTACTCTACTTC
ACGGGGCAGCGAGGGGCCCGGGCTCCTGCGGGGATGCAGGTGGTGTCTCATGGAGATGAGCGGC
CTGCCTGGCTCATGTCAGAGACCCTGCGCCACCTTCACACACACTTTGGGGCAGACTATGACTG
GTTCTTCATCATGCAGGACGACACATACGTGCAGGCCCCCAGACTGGCAGCTCTCGCTGGCCAT
CTTAGCATCAACCAAGACCTGTACTTGGGCCACGCAGAGGAGTTCATTGGTACAGGAGAGCAGG
CCCGGTACTGCCACGGGGGCTTCGGCTACCTGTTGTCACGGAGTCTCCTATTGCGTTTGCGGCC
GCATCTGGATGGCTGCCGAGGGGACATTCTCAGTGCCCGGCCTGATGAATGGCTTGGCCGCTGC
CTCATCGACACTCTGGGCATCGGCTGTGTCTCACAGCACCAGGGGCAACAGTATCGCTCCTTCG
AACTGGCCAAGAATAGGGACCCTGAGAAGGAGGGGAGCCCTGCATTCCTGAGTGCCTTCACCGT
TCACCCTGTCTCCGAGGGTACCCTCATGTACCGGCTCCACAAACGCTTCAGTGCCCTGGAGTTG
GAGCGGGCCTACAAGGAGATAGAACAACTGCAGGCTCAGATCCGGAACCTGACAGTGCTGACCC
CCGAGGGGGAGGCAGGGCTAAGCTGGCCTGTTGGGCTCCCAGCCCCATTCATTCCACACTCTCG
ATTCGAGGTGTTGGGCTGGGACTACTTCACCGAGCAACACACCTTCGCCTGTGCAGACGGGGCT
CCCAAGTGCCCGCTGCAGGGGGCTAGCAGGGCAGATGTGGGGGATGCCGTGGACACTGCCCTGG
AGCAGCTCAATCGGCGCTATCAGCCCCGCTTGCGCTTCCAGAAGCAGCGGCTTCTCAACGGCTA
CAGGCGCTTTGACCCTGCGAGGGGCATGGAGTACACCCTGGACTTGCTGCTGGAAGCCGTGACT
CAACGAGGGCATCGACGCTCCCTGGCCCGCAGAGTGAGCCTGCTGAGGCCACTGAGCAAAGTGG
AAATCCTGCCTATGCCCTATGTCACTGAGGCTACCCGGGTGCAGCTGGTGTTGCCGATCCTGGT
GGCCGAAGCTCCGGCTGCCCTGGCTTTTCTTGAAGCCTTTGCTGCCAGTGTTCTGGAGCCTCGA
GAACATGCATTGCTCACCCTGTTGTTGGTCTATGGGCCCCGGGAAGGCCGCGGGGGCCCTGACC
CATTTCTTGGAGTGAAGGCTGCAGCAGCTGAGTTAGAACGACGGTACCCCGGGACGAGGCTGGC
CTGGCTTGCTGTTCGAGCGGAGGCCCCTTCCCAGGTGCGACTCATGGATGTCATCTCCAAGAAA
CACCCCGTGGACACGCTTTTCTTCCTTACCACTGTGTGGACAAGACCTGGGTCGGAAGTCCTCA
ACCGCTGCCGTATGAATGCAATCTCGGGCTGGCAGGCCTTCTTTCCGGTCCACTTTCAGGAGTT
CAACCCCGTTCTGTCACCACAGAGATCTCCCCCAGGTGTCCCTGGGGCTGGCCCTGACCCCCCA
TCCCCTGGTGTGGACCCTTCTCGGGGAGCTCCAGTCGGGGGCAGATTTGACCGGCAGGCATCAG
CAGAGGGCTGCTTCTACAACGCTGACTACCTGGCAGCCCGGGCCCGGCTGGCTGGTGAACTGGC
AGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGATGTTTTCCTCCGGTTCTCA
GGGCTCCACCTCTTTCGAGCCGTAGAGCCAGGGCTGGTACAGAAGTTCTCCCTGAGGGACTGCA
GCCCCCGGCTCAGTGAGGAACTGTACCACCGTTGTCGCCTCAGCAACTTGGAGGGGCTGGGTGC
CCGTACCCAGCTAGCTATGGCTCTGTTTGAGCAGGAGCAGGCCAACAGCACTTAGCTTCTCCAC
CCCTGGGTCTGCCATAGCCCCAGGAAGGGCAAGGCAAGGCAATGGACAGATGGAGGGCTTGCCG
CTGTATTTTTTTAAAAATAAGAAATGTTATTAAAAGTATCTTCTGCCAAAC

hide sequence

RefSeq Acc Id:

XM_008762633 ⟹ XP_008760855

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	11,470,917 - 11,478,379 (-)	NCBI
mRatBN7.2	4	10,580,462 - 10,585,940 (-)	NCBI
Rnor_6.0	4	7,108,462 - 7,113,940 (-)	NCBI

Sequence:

show sequence

GACTGACAGGCAGCGGAAGAGGAAGCCGAGGGCTGGGCTGTGAGGTGGCAGTGGCTGCAAAGCG
GAGCTCCTCGCCCGGCAGCAGGGTGGGCTCACCTGCGAGGCGGCTCCGTCGGCTGTGGGGTTTG
GGTGTTCCTGTCCCCCTGACCGGCATGACCTGAGAACCCGCTCGGTCTTACTCTACGCCGCGAG
CTCCCTTCCGCCGCTCGAGTTCTCAGAGCAAACCAGCTGGACGCCGGGCCTTCTCTGCAGTCGC
GGGACTAATTTCTCTGCAGTAGGCGATTAATTTCTGTCTCCAGACGGCCGGCTAGGACTCGCTC
TGTGCCTCCTGAGGGCTGGCACGGGGCTGTGGTCGCCAAGGGAATAATAGGGCACTGACTGGCG
CAGGCAGGTGTCCTGTTGGAAGGTGGTTCTCTGGCTAAAACCGTGGGACAACTGCTGGCCTGGG
GCCCATCAACCTACTAATCCCTGAGACTGTGCCCCTGGGGCACCCTGTGTCAGGGCCTGCCACC
ATGCGGCTGAGCTCCCTGCTGGCCGTGCTACGGCCAATGCTCCCCCTCATCCTGGGACTGTCTC
TGGGATGCAGCCTGAGCCTCCTTCGGGTTTCCTGGATCCAGGGTGAGGGAGAAGATCCCTGTGT
AGAGGCTGTGGGGAAGCCAGGAGGGCCACAGAATCCAGACTTGAAACACGGGCTGGACCAAAGC
GATGAAGACTTCAAACCTAGGATTGTCCCCTACTACAGGGACCCTAACAAGCATTACAAGAAGG
TGCTCAGGACTCGGTATATACAGACAGAGCTGGGCTCCCGTGAGCGCTTGCTGGTGGCTGTCCT
GACTTCTCGAGCCACACTATCTACCCTGGCCGTCGCTGTTAACCGTACAGTGGCACATCACTTC
CCTCGGTTACTCTACTTCACGGGGCAGCGAGGGGCCCGGGCTCCTGCGGGGATGCAGGTGGTGT
CTCATGGAGATGAGCGGCCTGCCTGGCTCATGTCAGAGACCCTGCGCCACCTTCACACACACTT
TGGGGCAGACTATGACTGGTTCTTCATCATGCAGGACGACACATACGTGCAGGCCCCCAGACTG
GCAGCTCTCGCTGGCCATCTTAGCATCAACCAAGACCTGTACTTGGGCCACGCAGAGGAGTTCA
TTGGTACAGGAGAGCAGGCCCGGTACTGCCACGGGGGCTTCGGCTACCTGTTGTCACGGAGTCT
CCTATTGCGTTTGCGGCCGCATCTGGATGGCTGCCGAGGGGACATTCTCAGTGCCCGGCCTGAT
GAATGGCTTGGCCGCTGCCTCATCGACACTCTGGGCATCGGCTGTGTCTCACAGCACCAGGGGC
AACAGTATCGCTCCTTCGAACTGGCCAAGAATAGGGACCCTGAGAAGGAGGGGAGCCCTGCATT
CCTGAGTGCCTTCACCGTTCACCCTGTCTCCGAGGGTACCCTCATGTACCGGCTCCACAAACGC
TTCAGTGCCCTGGAGTTGGAGCGGGCCTACAAGGAGATAGAACAACTGCAGGCTCAGATCCGGA
ACCTGACAGTGCTGACCCCCGAGGGGGAGGCAGGGCTAAGCTGGCCTGTTGGGCTCCCAGCCCC
ATTCATTCCACACTCTCGATTCGAGGTGTTGGGCTGGGACTACTTCACCGAGCAACACACCTTC
GCCTGTGCAGACGGGGCTCCCAAGTGCCCGCTGCAGGGGGCTAGCAGGGCAGATGTGGGGGATG
CCGTGGACACTGCCCTGGAGCAGCTCAATCGGCGCTATCAGCCCCGCTTGCGCTTCCAGAAGCA
GCGGCTTCTCAACGGCTACAGGCGCTTTGACCCTGCGAGGGGCATGGAGTACACCCTGGACTTG
CTGCTGGAAGCCGTGACTCAACGAGGGCATCGACGCTCCCTGGCCCGCAGAGTGAGCCTGCTGA
GGCCACTGAGCAAAGTGGAAATCCTGCCTATGCCCTATGTCACTGAGGCTACCCGGGTGCAGCT
GGTGTTGCCGATCCTGGTGGCCGAAGCTCCGGCTGCCCTGGCTTTTCTTGAAGCCTTTGCTGCC
AGTGTTCTGGAGCCTCGAGAACATGCATTGCTCACCCTGTTGTTGGTCTATGGGCCCCGGGAAG
GCCGCGGGGGCCCTGACCCATTTCTTGGAGTGAAGGCTGCAGCAGCTGAGTTAGAACGACGGTA
CCCCGGGACGAGGCTGGCCTGGCTTGCTGTTCGAGCGGAGGCCCCTTCCCAGGTGCGACTCATG
GATGTCATCTCCAAGAAACACCCCGTGGACACGCTTTTCTTCCTTACCACTGTGTGGACAAGAC
CTGGGTCGGAAGTCCTCAACCGCTGCCGTATGAATGCAATCTCGGGCTGGCAGGCCTTCTTTCC
GGTCCACTTTCAGGAGTTCAACCCCGTTCTGTCACCACAGAGATCTCCCCCAGGTGTCCCTGGG
GCTGGCCCTGACCCCCCATCCCCTGGTGTGGACCCTTCTCGGGGAGCTCCAGTCGGGGGCAGAT
TTGACCGGCAGGCATCAGCAGAGGGCTGCTTCTACAACGCTGACTACCTGGCAGCCCGGGCCCG
GCTGGCTGGTGAACTGGCAGGCCAGGAAGAGGAGGAAGCCCTGGAGGGGCTGGAGGTGATGGAT
GTTTTCCTCCGGTTCTCAGGGCTCCACCTCTTTCGAGCCGTAGAGCCAGGGCTGGTACAGAAGT
TCTCCCTGAGGGACTGCAGCCCCCGGCTCAGTGAGGAACTGTACCACCGTTGTCGCCTCAGCAA
CTTGGAGGGGCTGGGTGCCCGTACCCAGCTAGCTATGGCTCTGTTTGAGCAGGAGCAGGCCAAC
AGCACTTAGCTTCTCCACCCCTGGGTCTGCCATAGCCCCAGGAAGGGCAAGGCAAGGCAATGGA
CAGATGGAGGGCTTGCCGCTGTATTTTTTTAAAAATAAGAAATGTTATTAAAAGTATCTTCTGC
CAAA

hide sequence

RefSeq Acc Id:

XM_039107218 ⟹ XP_038963146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	11,470,917 - 11,478,390 (-)	NCBI
mRatBN7.2	4	10,580,462 - 10,585,940 (-)	NCBI

RefSeq Acc Id:

XM_063285693 ⟹ XP_063141763

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	11,470,917 - 11,475,938 (-)	NCBI

RefSeq Acc Id:

XR_010065615

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	11,470,917 - 11,479,096 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100044	(Get FASTA)	NCBI Sequence Viewer
	XP_008760855	(Get FASTA)	NCBI Sequence Viewer
	XP_038963146	(Get FASTA)	NCBI Sequence Viewer
	XP_063141763	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99344	(Get FASTA)	NCBI Sequence Viewer
	EDL99345	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014082
	ENSRNOP00000014082.6

RefSeq Acc Id:	NP_001100044 ⟸ NM_001106574
- Peptide Label:	precursor
- UniProtKB:	D4ADR5 (UniProtKB/TrEMBL), A0A8I6AI88 (UniProtKB/TrEMBL), A6K535 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLSSLLAVLRPMLPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGKPGGPQNPDLKHGLDQS DEDFKPRIVPYYRDPNKHYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHF PRLLYFTGQRGARAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRL AALAGHLSINQDLYLGHAEEFIGTGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPD EWLGRCLIDTLGIGCVSQHQGQQYRSFELAKNRDPEKEGSPAFLSAFTVHPVSEGTLMYRLHKR FSALELERAYKEIEQLQAQIRNLTVLTPEGEAGLSWPVGLPAPFIPHSRFEVLGWDYFTEQHTF ACADGAPKCPLQGASRADVGDAVDTALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDL LLEAVTQRGHRRSLARRVSLLRPLSKVEILPMPYVTEATRVQLVLPILVAEAPAALAFLEAFAA SVLEPREHALLTLLLVYGPREGRGGPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLM DVISKKHPVDTLFFLTTVWTRPGSEVLNRCRMNAISGWQAFFPVHFQEFNPVLSPQRSPPGVPG AGPDPPSPGVDPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMD VFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGARTQLAMALFEQEQAN ST hide sequence

RefSeq Acc Id:	XP_008760855 ⟸ XM_008762633
- Peptide Label:	isoform X1
- UniProtKB:	D4ADR5 (UniProtKB/TrEMBL), A0A8I6AI88 (UniProtKB/TrEMBL), A6K535 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRLSSLLAVLRPMLPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGKPGGPQNPDLKHGLDQS DEDFKPRIVPYYRDPNKHYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHF PRLLYFTGQRGARAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRL AALAGHLSINQDLYLGHAEEFIGTGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPD EWLGRCLIDTLGIGCVSQHQGQQYRSFELAKNRDPEKEGSPAFLSAFTVHPVSEGTLMYRLHKR FSALELERAYKEIEQLQAQIRNLTVLTPEGEAGLSWPVGLPAPFIPHSRFEVLGWDYFTEQHTF ACADGAPKCPLQGASRADVGDAVDTALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDL LLEAVTQRGHRRSLARRVSLLRPLSKVEILPMPYVTEATRVQLVLPILVAEAPAALAFLEAFAA SVLEPREHALLTLLLVYGPREGRGGPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLM DVISKKHPVDTLFFLTTVWTRPGSEVLNRCRMNAISGWQAFFPVHFQEFNPVLSPQRSPPGVPG AGPDPPSPGVDPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMD VFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGARTQLAMALFEQEQAN ST hide sequence

Ensembl Acc Id:

ENSRNOP00000014082 ⟸ ENSRNOT00000014082

RefSeq Acc Id:	XP_038963146 ⟸ XM_039107218
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AI88 (UniProtKB/TrEMBL), A6K535 (UniProtKB/TrEMBL), D4ADR5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000093802 ⟸ ENSRNOT00000095920

RefSeq Acc Id:	XP_063141763 ⟸ XM_063285693
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ADR5-F1-model_v2	AlphaFold	D4ADR5	1-770	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692785

Promoter ID:

EPDNEW_R3309

Type:

initiation region

Name:

Chpf2_1

Description:

chondroitin polymerizing factor 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	7,113,891 - 7,113,951	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306404	AgrOrtholog
BioCyc Gene	G2FUF-46053	BioCyc
BioCyc Pathway	PWY-6566 [chondroitin biosynthesis]	BioCyc
BioCyc Pathway Image	PWY-6566	BioCyc
Ensembl Genes	ENSRNOG00000010466	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014082	ENTREZGENE
	ENSRNOT00000014082.7	UniProtKB/TrEMBL
Gene3D-CATH	3.90.550.50	UniProtKB/TrEMBL
InterPro	Chond_GalNAc	UniProtKB/TrEMBL
	CS_glycosyltransferase	UniProtKB/TrEMBL
KEGG Report	rno:296733	UniProtKB/TrEMBL
NCBI Gene	296733	ENTREZGENE
PANTHER	CHONDROITIN SULFATE GLUCURONYLTRANSFERASE	UniProtKB/TrEMBL
	CHONDROITIN SYNTHASE	UniProtKB/TrEMBL
Pfam	CHGN	UniProtKB/TrEMBL
PhenoGen	Chpf2	PhenoGen
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010466	RatGTEx
UniProt	A0A8I6AI88	ENTREZGENE
	A6K535	ENTREZGENE, UniProtKB/TrEMBL
	D4ADR5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-05-25	Chpf2	chondroitin polymerizing factor 2	RGD1306404	similar to mKIAA1402 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1306404	similar to mKIAA1402 protein	RGD1306404_predicted	similar to mKIAA1402 protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1306404_predicted	similar to mKIAA1402 protein (predicted)	LOC296733_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296733_predicted	similar to mKIAA1402 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

BioCyc Pathways