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Gene: Cab39 (calcium binding protein 39) Rattus norvegicus

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Symbol:

Cab39

Name:

calcium binding protein 39

RGD ID:

1306390

Description:

Predicted to enable protein serine/threonine kinase activator activity and protein serine/threonine kinase binding activity. Involved in response to activity and response to thyroid hormone. Located in Z disc. Part of protein-containing complex. Biomarker of hyperthyroidism and transient cerebral ischemia. Human ortholog(s) of this gene implicated in hepatocellular carcinoma. Orthologous to human CAB39 (calcium binding protein 39); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; mTOR signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

calcium-binding protein 39; LOC301574; MO25; MO25alpha

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CAB39 (calcium binding protein 39)	HGNC	Ensembl, NCBI, Panther
Mus musculus (house mouse):	Cab39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cab39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CAB39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CAB39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cab39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CAB39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CAB39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cab39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Cab39 (calcium binding protein 39)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CAB39L (calcium binding protein 39 like)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	CAB39 (calcium binding protein 39)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cab39 (calcium binding protein 39)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cab39 (calcium binding protein 39)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	HYM1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Mo25	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mop-25.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	mop-25.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cab39	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	93,911,099 - 93,972,542 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	93,911,054 - 93,972,542 (+)	Ensembl				GRCr8
mRatBN7.2	9	86,463,095 - 86,524,545 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	86,463,095 - 86,524,544 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	94,881,079 - 94,942,496 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	100,009,571 - 100,070,988 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	98,390,372 - 98,451,789 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	92,834,327 - 92,895,778 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	92,834,357 - 92,895,778 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	92,563,873 - 92,625,079 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	84,528,678 - 84,590,375 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	83,885,355 - 83,945,864 (+)	NCBI		Celera
RGSC_v3.1	9	84,712,097 - 84,773,624 (+)	NCBI
Cytogenetic Map	9	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hepatocellular carcinoma (ISO)

hyperthyroidism (IEP)

Lymphatic Metastasis (ISO)

Neoplasm Metastasis (ISO)

pancreatic cancer (ISO)

transient cerebral ischemia (IEP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,6-trinitrobenzenesulfonic acid (EXP)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

all-trans-retinol (EXP)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

calcitriol (ISO)

camptothecin (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

daunorubicin (ISO)

dextran sulfate (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

dioxygen (ISO)

doxorubicin (ISO)

ethanol (ISO)

etoposide (ISO)

flutamide (EXP)

fulvestrant (ISO)

geldanamycin (ISO)

gentamycin (EXP)

hypochlorous acid (ISO)

ivermectin (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

nefazodone (EXP)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of protein kinase activity (ISO)

cellular hypotonic response (IEA,ISO)

intracellular signal transduction (IBA,IEA,ISO)

negative regulation of potassium ion transmembrane transport (IEA,ISO)

response to activity (IEP)

response to thyroid hormone (IEP)

signal transduction (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

protein-containing complex (IDA)

serine/threonine protein kinase complex (IEA,ISO)

Z disc (IDA)

Molecular Function

kinase binding (IEA,ISO)

protein binding (ISO)

protein kinase activator activity (IEA,ISO)

protein serine/threonine kinase activator activity (IBA,IEA,ISO)

protein serine/threonine kinase binding (IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

adenosine monophosphate-activated protein kinase (AMPK) signaling pathway (IDA,TAS)

mTOR signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Liver Kinase B1 complex acts as a novel modifier of myofilament function and localizes to the Z-disk in cardiac myocytes.	Behunin SM, etal., Arch Biochem Biophys. 2016 Jul 1;601:32-41. doi: 10.1016/j.abb.2016.03.012. Epub 2016 Mar 10.
2.	WNK-Cab39-NKCC1 signaling increases the susceptibility to ischemic brain damage in hypertensive rats.	Bhuiyan MIH, etal., J Cereb Blood Flow Metab. 2017 Aug;37(8):2780-2794. doi: 10.1177/0271678X16675368. Epub 2016 Jan 1.
3.	Thyroid hormone effects on LKB1, MO25, phospho-AMPK, phospho-CREB, and PGC-1alpha in rat muscle.	Branvold DJ, etal., J Appl Physiol (1985). 2008 Oct;105(4):1218-27. doi: 10.1152/japplphysiol.00997.2007. Epub 2008 Jul 31.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	MiR-451 Promotes Cell Proliferation and Metastasis in Pancreatic Cancer through Targeting CAB39.	Guo R, etal., Biomed Res Int. 2017;2017:2381482. doi: 10.1155/2017/2381482. Epub 2017 Jan 19.
7.	The AMP-activated protein kinase pathway--new players upstream and downstream.	Hardie DG J Cell Sci. 2004 Nov 1;117(Pt 23):5479-87.
8.	Complexes between the LKB1 tumor suppressor, STRAD alpha/beta and MO25 alpha/beta are upstream kinases in the AMP-activated protein kinase cascade.	Hawley SA, etal., J Biol. 2003;2(4):28. Epub 2003 Sep 24.
9.	Calcium-binding protein 39 promotes hepatocellular carcinoma growth and metastasis by activating extracellular signal-regulated kinase signaling pathway.	Jiang L, etal., Hepatology. 2017 Nov;66(5):1529-1545. doi: 10.1002/hep.29312. Epub 2017 Sep 29.
10.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
11.	GOA pipeline	RGD automated data pipeline
12.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
13.	Endurance training increases LKB1 and MO25 protein but not AMP-activated protein kinase kinase activity in skeletal muscle.	Taylor EB, etal., Am J Physiol Endocrinol Metab. 2004 Dec;287(6):E1082-9. doi: 10.1152/ajpendo.00179.2004. Epub 2004 Aug 3.

Additional References at PubMed

PMID:18854309	PMID:19056867	PMID:19199708	PMID:19892943	PMID:23376485	PMID:23533145	PMID:24393035	PMID:24811174

Genomics

Comparative Map Data

Cab39
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	93,911,099 - 93,972,542 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	93,911,054 - 93,972,542 (+)	Ensembl				GRCr8
mRatBN7.2	9	86,463,095 - 86,524,545 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	86,463,095 - 86,524,544 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	94,881,079 - 94,942,496 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	100,009,571 - 100,070,988 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	98,390,372 - 98,451,789 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	92,834,327 - 92,895,778 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	92,834,357 - 92,895,778 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	92,563,873 - 92,625,079 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	84,528,678 - 84,590,375 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	83,885,355 - 83,945,864 (+)	NCBI		Celera
RGSC_v3.1	9	84,712,097 - 84,773,624 (+)	NCBI
Cytogenetic Map	9	q35	NCBI

CAB39
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	230,712,842 - 230,821,075 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	230,712,822 - 230,821,076 (+)	Ensembl			hg38	GRCh38
GRCh37	2	231,577,557 - 231,685,790 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	231,285,909 - 231,394,031 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	231,403,169 - 231,511,291	NCBI
Celera	2	225,353,992 - 225,462,181 (+)	NCBI		Celera
Cytogenetic Map	2	q37.1	NCBI
HuRef	2	223,417,541 - 223,525,784 (+)	NCBI		HuRef
CHM1_1	2	231,583,373 - 231,691,604 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	231,195,928 - 231,304,198 (+)	NCBI		T2T-CHM13v2.0

Cab39
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	85,707,796 - 85,779,298 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	85,721,162 - 85,779,297 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	85,793,441 - 85,851,577 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	85,793,441 - 85,851,576 (+)	Ensembl			mm10	GRCm38
MGSCv37	1	87,690,022 - 87,748,152 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	87,626,534 - 87,681,536 (+)	NCBI		MGSCv36	mm8
Celera	1	88,758,053 - 88,816,367 (+)	NCBI		Celera
Cytogenetic Map	1	C5	NCBI
cM Map	1	43.94	NCBI

Cab39
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955453	4,582,530 - 4,671,157 (-)	Ensembl
ChiLan1.0	NW_004955453	4,582,530 - 4,670,978 (-)	NCBI	ChiLan1.0	ChiLan1.0

CAB39
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	133,337,088 - 133,445,443 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	133,352,306 - 133,460,408 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	117,965,688 - 118,074,063 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	236,809,549 - 236,870,646 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	236,809,549 - 236,870,646 (+)	Ensembl			panPan2	panpan1.1

CAB39
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	42,752,798 - 42,801,257 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	42,703,332 - 42,799,279 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	43,337,333 - 43,362,013 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	42,975,275 - 43,058,499 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	42,960,717 - 43,058,482 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	42,904,232 - 42,987,504 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	42,746,950 - 42,830,129 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	42,902,163 - 42,985,458 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cab39
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	184,936,826 - 184,984,468 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936525	5,954,978 - 6,032,644 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936525	5,955,252 - 6,002,917 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CAB39
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	131,492,578 - 131,584,962 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	15	131,492,575 - 131,584,963 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CAB39
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	116,749,173 - 116,860,814 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	116,798,825 - 116,861,332 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	82,601,451 - 82,709,564 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cab39
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624843	4,130,052 - 4,217,540 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624843	4,129,755 - 4,217,406 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cab39
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	157,953,998 - 158,015,389 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cab39
271 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	380
Count of miRNA genes:	214
Interacting mature miRNAs:	280
Transcripts:	ENSRNOT00000066440
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631656	Bp108	Blood pressure QTL 108	5.97	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	56047863	101047863	Rat
1582203	Gluco19	Glucose level QTL 19	3.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	63376862	108376862	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
724515	Uae16	Urinary albumin excretion QTL 16	8		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	65657365	108376720	Rat
724547	Cm21	Cardiac mass QTL 21	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	9	86720043	110356905	Rat
2303178	Bp334	Blood pressure QTL 334	3.7	0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	86720043	121768150	Rat
724544	Uae9	Urinary albumin excretion QTL 9	4.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	9	64220169	109220169	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
1578760	Cm53	Cardiac mass QTL 53	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	64220169	109220169	Rat
1581580	Uae34	Urinary albumin excretion QTL 34			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	64220169	109220169	Rat
1300134	Bp185	Blood pressure QTL 185	3.73		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	68875497	121768150	Rat
1354626	Bvd1	Brain ventricular dilatation QTL 1	3.73	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	9	83161999	118999486	Rat
4889852	Pur26	Proteinuria QTL 26	15	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	85262459	109044727	Rat
7794784	Mcs31	Mammary carcinoma susceptibility QTL 31	2.98		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	9	85262459	118999486	Rat
731164	Uae25	Urinary albumin excretion QTL 25	3.5	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	9	48718864	108376862	Rat
4889943	Bss90	Bone structure and strength QTL 90	4.1		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	9	54506504	99506504	Rat
1578757	Pur6	Proteinuria QTL 6	3.3	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	9	64220169	109220169	Rat

Markers in Region

AA960512

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	86,524,321 - 86,524,507 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	92,915,384 - 92,915,568 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	97,945,565 - 97,945,748	NCBI	Rnor6.0
Rnor_6.0	9	92,895,556 - 92,895,741	NCBI	Rnor6.0
Rnor_5.0	9	92,624,857 - 92,625,042	UniSTS	Rnor5.0
Rnor_5.0	1	99,027,336 - 99,027,519	UniSTS	Rnor5.0
RGSC_v3.4	1	92,777,751 - 92,777,934	UniSTS	RGSC3.4
RGSC_v3.4	9	84,590,153 - 84,590,338	UniSTS	RGSC3.4
Celera	9	83,945,642 - 83,945,827	UniSTS
Celera	1	87,223,205 - 87,223,388	UniSTS
Cytogenetic Map	9	q35	UniSTS

RH128526

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	86,524,319 - 86,524,517 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	92,915,382 - 92,915,578 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	97,945,563 - 97,945,758	NCBI	Rnor6.0
Rnor_6.0	9	92,895,554 - 92,895,751	NCBI	Rnor6.0
Rnor_5.0	9	92,624,855 - 92,625,052	UniSTS	Rnor5.0
Rnor_5.0	1	99,027,334 - 99,027,529	UniSTS	Rnor5.0
RGSC_v3.4	1	92,777,749 - 92,777,944	UniSTS	RGSC3.4
RGSC_v3.4	9	84,590,151 - 84,590,348	UniSTS	RGSC3.4
Celera	9	83,945,640 - 83,945,837	UniSTS
Celera	1	87,223,203 - 87,223,398	UniSTS
Cytogenetic Map	9	q35	UniSTS

RH131919

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	86,522,497 - 86,522,691 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	92,893,732 - 92,893,925	NCBI	Rnor6.0
Rnor_5.0	9	92,623,033 - 92,623,226	UniSTS	Rnor5.0
RGSC_v3.4	9	84,588,329 - 84,588,522	UniSTS	RGSC3.4
Celera	9	83,943,818 - 83,944,011	UniSTS
Cytogenetic Map	9	q35	UniSTS

RH139163

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	86,485,165 - 86,485,314 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	92,856,425 - 92,856,573	NCBI	Rnor6.0
Rnor_5.0	9	92,585,941 - 92,586,089	UniSTS	Rnor5.0
RGSC_v3.4	9	84,550,746 - 84,550,894	UniSTS	RGSC3.4
Celera	9	83,907,421 - 83,907,569	UniSTS
Cytogenetic Map	9	q35	UniSTS

UniSTS:234167

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	86,524,322 - 86,524,514 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	50,020,767 - 50,020,952 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	50,205,621 - 50,205,805	NCBI	Rnor6.0
Rnor_6.0	9	92,895,557 - 92,895,748	NCBI	Rnor6.0
Rnor_5.0	9	92,624,858 - 92,625,049	UniSTS	Rnor5.0
Rnor_5.0	1	49,548,684 - 49,548,868	UniSTS	Rnor5.0
RGSC_v3.4	9	84,590,154 - 84,590,345	UniSTS	RGSC3.4
RGSC_v3.4	1	44,515,813 - 44,515,997	UniSTS	RGSC3.4
Celera	1	45,805,255 - 45,805,439	UniSTS
Celera	9	83,945,643 - 83,945,834	UniSTS
Cytogenetic Map	1	q11	UniSTS
Cytogenetic Map	9	q35	UniSTS

fk33e12.x1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	86,521,298 - 86,522,120 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	92,892,533 - 92,893,354	NCBI	Rnor6.0
Rnor_5.0	9	92,621,834 - 92,622,655	UniSTS	Rnor5.0
RGSC_v3.4	9	84,587,130 - 84,587,951	UniSTS	RGSC3.4
Celera	9	83,942,619 - 83,943,440	UniSTS
Cytogenetic Map	9	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
22	13	83	211	91	90	59	150	59	6	475	272	18	193	114	121	31	33	33

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006245375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063267026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ235215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066440 ⟹ ENSRNOP00000060020

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	93,911,076 - 93,971,025 (+)	Ensembl
mRatBN7.2 Ensembl	9	86,463,095 - 86,524,544 (+)	Ensembl
Rnor_6.0 Ensembl	9	92,834,357 - 92,895,778 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085332 ⟹ ENSRNOP00000071044

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	93,911,054 - 93,972,542 (+)	Ensembl
mRatBN7.2 Ensembl	9	86,463,095 - 86,524,544 (+)	Ensembl
Rnor_6.0 Ensembl	9	92,859,988 - 92,893,614 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102022 ⟹ ENSRNOP00000076542

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	93,962,667 - 93,972,542 (+)	Ensembl
mRatBN7.2 Ensembl	9	86,514,670 - 86,524,544 (+)	Ensembl

RefSeq Acc Id:

NM_001106924 ⟹ NP_001100394

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,099 - 93,972,541 (+)	NCBI
mRatBN7.2	9	86,463,095 - 86,524,544 (+)	NCBI
Rnor_6.0	9	92,834,357 - 92,895,778 (+)	NCBI
Rnor_5.0	9	92,563,873 - 92,625,079 (+)	NCBI
RGSC_v3.4	9	84,528,678 - 84,590,375 (+)	RGD
Celera	9	83,885,355 - 83,945,864 (+)	RGD

Sequence:

show sequence

CTCAGGCCGGAGCTGGGCGCGGGGCGCCAGGAGCCGCGCGGCCTGAGAGAGTCTGGGGCTTCAG
TAGTCGCGCGAAGGCTGAGGCAACCTCAGAGGCGAAGGCAGTGCCGGACCACACAGCCACAGCC
GCAGCCGGACCGAGCGCAGCAGCGCGGCGGCCACAGCAGGAACCCCTGGGCCACCGTCCACCCG
CGCAGCCGCCGCCGCCGCCGCGGGAGCCCGTCGCCCCGAGCAGCTGCAGGCGGAGGACAACGGA
GGGCCGGAGCTTCCGAGCCGCACCGCGGGGACCGAGCGAGCAGCCCGAGGCGGCGGCGGCCGAG
GACGGGGACGGAGACGACACGGAGAGGGAGCTCCCTGGCCCGGCCCAGCCCCGTCAAGCAGGTA
GAGTGCAGTGGAAGCCTCTGGTGCTGCCGTCATGCCGTTCCCATTTGGCAAGTCTCACAAGTCT
CCGGCAGATATTGTGAAGAATTTGAAGGAGAGCATGGCTGTTTTGGAAAAGCAGGACATTTCTG
ACAAAAAGGCAGAAAAGGCTACAGAAGAAGTTTCCAAAAATTTGGTTGCCATGAAAGAAATTCT
GTACGGCACAAATGAGAAGGAGCCCCAGACAGAGGCCGTAGCACAGCTGGCTCAGGAGCTGTAC
AATAGTGGCCTCCTCAGCACCCTGGTGGCTGACTTACAGCTCATTGACTTTGAGGTATGAATCT
CCAGAAATAGCTCTTAATTGTGGGATAATGTTAAGAGAATGCATCAGACACGAACCACTCGCAA
AAATCATTTTGTGGTCGGAACAGTTTTATGACTTCTTCAGATATGTTGAAATGTCAACATTTGA
CATAGCTTCAGATGCATTTGCTACGTTCAAGGATTTACTTACAAGACATAAGTTGCTCAGTGCA
GAATTTTTGGAGCAACATTATGATAGATTTTTCAGTGAATATGAAAAGCTACTTCATTCAGAAA
ATTATGTGACAAAGAGACAGTCACTGAAGCTTCTGGGTGAACTGCTGTTAGACAGACACAACTT
CACTATTATGACGAAATACATCAGTAAACCTGAGAACCTCAAGTTAATGATGAACCTCCTCCGA
GACAAGAGCCGTAACATCCAGTTTGAGGCCTTTCACGTGTTCAAGGTGTTTGTGGCCAACCCCA
ACAAGACACAGCCCATCCTAGACATCCTCCTCAAGAACCAGACCAAACTCATCGAGTTCCTCAG
CAAATTTCAGAACGACAGGACGGAAGACGAGCAGTTCAATGATGAGAAGACCTACTTAGTCAAG
CAGATCAGGGATTTGAAGAGAGCAGCCCAGCAAGAAGCCTAGTCTGCAGCACGCCCTGCCGTCC
ACCCACGCTCAGCACTTGCTGTCAGCTCCTCAGCACCAGGCCCTCGGCGCATGGGGAGCATTCT
GCTAATCTGCTGTTAAGTGAACGGTTTTTCATTTTACCTTTTTGTTTTTCAGTCCAGGTTGGAG
AACGTAGCTGCTGCTGCTTGCACATTAGAGCGCACGTGGTCTTTCCCTTGATCTCTGTGTCATT
TCAGAACTCACAGACTCCATTTGCTACAGGAGTTCTGAACATGGCTGGGTTCATGAAAGCAAAT
GTACAGTGAGAGTGGTCTAGGGAAAGAAGAGAACGTGATGACATGGACTGACACCTGCCTGGCC
ATCAGCACTGCTCTCTCCAGTCTGTGCAGTGCGGCACGGGCACACCCACCCTGGTGCCGGGTCA
TCCGTCTCTGCCGCAGGAAGACGGTGTACACAGGGGTCTACTGGAGATCAGAAGGGAGGACTGC
ATCCAGTGTGAGCTTTGGGGAGGATAAAGTTGATGTGCAAATAAATTGATACTGAAACTTAGCG
ACTTCTCGAGTGTGGAACTTCATAAGGTCATAAGAAAGTGTATATATGCTTTTTCACAGCTTTC
TAGAACTTTTTGACATTTGATTTTCTTGAAACTTGTAAACCTGGATATGTTGAGGGGTGTTTGT
TATTTTACTTTTGAAGGTGTTTTAAAGCAGTAGCGCTAGCAGCAACACCCAGTGTTTCATTTCA
ACACTGCTTACAGGTTTCTTCTGTATATAATTCTTAGAATGCTCATTTCTTTTAAATCGTTTAA
TTTGTACAGCAGAGGAATGTTATTGTAGTAGTATGTAACTATTACCTGAGTTTTGCAAAAAAAA
AAAAAAAAGAATGCTCATATGTAATTGAAATACTTGAGATTACATGAAAATGCTGATTTTAACA
TTTAAGGATCACAGCATTAAAAGAAAAAAAAACCAATCCCTTGTATTCAGTTACCCAATGGGGT
GCCGTTGGCAGGCAGAACTACAAACCGGGAACGCGGTCTGTACATACTCTTGCAGAACCTTGGC
CTTACTCATTTAAATGCGTCCTAAGATTGCCATATCTATGAATGATACAGATCATGCTAAACAA
TGCTGATTTTTTTTGTTGGGGGGGGACCTCTTGTAGAGCACCCTTTCTTTAGAGTAAGTAATAT
CCAGTACAGTAGTCGTGAAACTGAATAATTAAAACTTTGGCTTCTCTTAGGAAAAGAAGAGCCC
TGGTCCTAGATGTCCTCGGGGAGATTGATGGTTTTTAATGTCCTTTTCCTTAATGCTGCAAATT
ATCAGTATTTATAAAGTAACTGATTTTGCACCTCTTTTTGTGACTGTGACCACAGCAGAACAGT
GTCTCCTAGACTGTATCTACATAAAGTTACTAGAATGGTGTCTGTCTGTCTTAGTTGACACACG
GATCACAACTAACAACTTAAAATCAGAGTTTGCCCGATCCAATTCAGCATGGCTGTAGCTGACT
AAAAAAATTTACATAATTATTCTTTGCTAGCCTCTCTTACTAACTGAATTATTCATTGGCCAGT
AAAAGGAGTCTCCTAGCTGATGTTTTAGGTTTTAAGGTTTCCTTCAAGGAATACAAGTCAGAAA
AACCACTCCAGAAAATACAGGTCTGTTCTATTTCATCTAAATGGCAGTCTTCAATAAAGGATTT
CCAAGGCTTTCTTTACCGGTGTGCGTACGTGCGTGATAACTCATGTTCTCCAGTAGAGATAGAG
AAAGTATTCAATCTCCTGGACAAGGAAATCCTCAGCTGGGTAGGAAGCAGACTCAGCTGAGCTA
AGTGACCCAGTCCTTGCCACCCTCGCTGAGTCAGGATCTGGTGACAGCAGCCATTACACCGAAT
GGAAGGGGTGTCTTGTTGCCTAGCCAGCTCTGAGAACTTGAGGCAACAATGCAGCTTCCACTTG
GGCAAACACAGAGTAGTACTAGAGCCTTGCTGTGGCAGATGGGTGCCATGTGTCAGAGAACTGG
GTCACTAATGAACGCACTGGAAGAGGAAGGCAGAGAAGGCTCTGGATTGTTTTTAAACAGAACA
ATGTGAAAACATTCAAGATTGAAAAGTTGCATTTAAAGTGTGATCATTTCCTAGGTTCCTATTA
CCAGAACGATTATCCTGGGTGTGGTTTCTTTGGTGTTGTAAAGGGTTAATTTTACTTAAGGCAG
TTACTTAATGTGATTTTTTTTTTTAACCCTTAAAAAAAGTGGGAGATGTATACAATTGTTAATG
ACATGGAAGTGTTTCCTTTCTCCTGAGGAAAAGTGAATTTCTTATCAGAATATCTGGCTGGCCC
TGTAATTTAAATTAAAATAAAATTTTGGAGAAACTG

hide sequence

RefSeq Acc Id:

NM_001401625 ⟹ NP_001388554

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,099 - 93,972,542 (+)	NCBI
mRatBN7.2	9	86,463,095 - 86,524,545 (+)	NCBI

RefSeq Acc Id:

XM_006245374 ⟹ XP_006245436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,534 - 93,972,539 (+)	NCBI
mRatBN7.2	9	86,464,280 - 86,523,027 (+)	NCBI
Rnor_6.0	9	92,835,512 - 92,893,947 (+)	NCBI
Rnor_5.0	9	92,563,873 - 92,625,079 (+)	NCBI

Sequence:

show sequence

GGGGTAGACTGAAGGGGCAGTTGGAGTCAGATCTCTGAATGCTGTAGAGGAGCTGTTTAAGCGA
CCTTCCACGGAAAACTTAGAACTCATTTTTCAGTGACTCATGAGGCCGGAAATGTATGCTAGGG
CATATTAAAGGCGCTCTTGTGAAAGACAGGCGAGCAGGGAAGGCCACAGTCAGGAGTTGACATT
GTTTCTTAAATATAATGCAGTTTGAGGTCGATTTTGACAGCTTCCGGATATTTAAGTAAATCTA
TGTCCAAGCCAAGGAAAATACCTTTTGCAGAAAGTGTCCCTAGATGTGTGCTTATCTGAAGTAA
TGAAAAGAGGTGCCTAAATTAACCTTCTCTGCACACAAGGCATTCGCGTTGGTGAGTTTTCTAA
AATTGCATCAGAACTTCTGCATCCCTTTGTTGAAATTGAAAATTAAACCGCGGATTTATAAAAA
ATAGTAATAAAAACCGACAGAAAGTTGGACACACACCGTTTTCTGGAAAGGTCAAGCAGGTAGA
GTGCAGTGGAAGCCTCTGGTGCTGCCGTCATGCCGTTCCCATTTGGCAAGTCTCACAAGTCTCC
GGCAGATATTGTGAAGAATTTGAAGGAGAGCATGGCTGTTTTGGAAAAGCAGGACATTTCTGAC
AAAAAGGCAGAAAAGGCTACAGAAGAAGTTTCCAAAAATTTGGTTGCCATGAAAGAAATTCTGT
ACGGCACAAATGAGAAGGAGCCCCAGACAGAGGCCGTAGCACAGCTGGCTCAGGAGCTGTACAA
TAGTGGCCTCCTCAGCACCCTGGTGGCTGACTTACAGCTCATTGACTTTGAGGGCAAAAAAGAC
GTGGCTCAAATTTTCAACAATATTCTCAGAAGACAAATTGGTACAAGAACTCCTACTGTTGAAT
ACATCTGCACCCAACAGAATATTTTGTTCATGTTATTGAAAGGGTATGAATCTCCAGAAATAGC
TCTTAATTGTGGGATAATGTTAAGAGAATGCATCAGACACGAACCACTCGCAAAAATCATTTTG
TGGTCGGAACAGTTTTATGACTTCTTCAGATATGTTGAAATGTCAACATTTGACATAGCTTCAG
ATGCATTTGCTACGTTCAAGGATTTACTTACAAGACATAAGTTGCTCAGTGCAGAATTTTTGGA
GCAACATTATGATAGATTTTTCAGTGAATATGAAAAGCTACTTCATTCAGAAAATTATGTGACA
AAGAGACAGTCACTGAAGCTTCTGGGTGAACTGCTGTTAGACAGACACAACTTCACTATTATGA
CGAAATACATCAGTAAACCTGAGAACCTCAAGTTAATGATGAACCTCCTCCGAGACAAGAGCCG
TAACATCCAGTTTGAGGCCTTTCACGTGTTCAAGGTGTTTGTGGCCAACCCCAACAAGACACAG
CCCATCCTAGACATCCTCCTCAAGAACCAGACCAAACTCATCGAGTTCCTCAGCAAATTTCAGA
ACGACAGGACGGAAGACGAGCAGTTCAATGATGAGAAGACCTACTTAGTCAAGCAGATCAGGGA
TTTGAAGAGAGCAGCCCAGCAAGAAGCCTAGTCTGCAGCACGCCCTGCCGTCCACCCACGCTCA
GCACTTGCTGTCAGCTCCTCAGCACCAGGCCCTCGGCGCATGGGGAGCATTCTGCTAATCTGCT
GTTAAGTGAACGGTTTTTCATTTTACCTTTTTGTTTTTCAGTCCAGGTTGGAGAACGTAGCTGC
TGCTGCTTGCACATTAGAGCGCACGTGGTCTTTCCCTTGATCTCTGTGTCATTTCAGAACTCAC
AGACTCCATTTGCTACAGGAGTTCTGAACATGGCTGGGTTCATGAAAGCAAATGTACAGTGAGA
GTGGTCTAGGGAAAGAAGAGAACGTGATGACATGGACTGACACCTGCCTGGCCATCAGCACTGC
TCTCTCCAGTCTGTGCAGTGCGGCACGGGCACACCCACCCTGGTGCCGGGTCATCCGTCTCTGC
CGCAGGAAGACGGTGTACACAGGGGTCTACTGGAGATCAGAAGGGAGGACTGCATCCAGTGTGA
GCTTTGGGGAGGATAAAGTTGATGTGCAAATAAATTGATACTGAAACTTA

hide sequence

RefSeq Acc Id:

XM_006245375 ⟹ XP_006245437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,992 - 93,972,539 (+)	NCBI
mRatBN7.2	9	86,464,061 - 86,523,027 (+)	NCBI
Rnor_6.0	9	92,835,155 - 92,893,947 (+)	NCBI
Rnor_5.0	9	92,563,873 - 92,625,079 (+)	NCBI

Sequence:

show sequence

CCGGCCTGGAGGTGCCCTCCCCCGGGGATCTTTAACTCCGTGATGTGAGAGATAAGACGAGTAC
ACAAATAGCTAAGATACCAGGCAAGAGGGGAGAGATAAGTTCTGTTTAGGAACTACCAATTGCT
GGAAAGGTGCTCTGGGGGGACGGGACCTGTCGATCGTTTCCGCCTTCCCACGAACCTGGGAGGC
TTCCTGGGCGAGGCGGTGCTAAACCCGGTCTAGAAGGCTCGATTGGATTCGGGAGGAGAAGGGG
GTTGCAGAGGAGAAGGGCGTGGAGGGGCAACAAAGCTGGAGGACAAAGGTCAAGCAGGTAGAGT
GCAGTGGAAGCCTCTGGTGCTGCCGTCATGCCGTTCCCATTTGGCAAGTCTCACAAGTCTCCGG
CAGATATTGTGAAGAATTTGAAGGAGAGCATGGCTGTTTTGGAAAAGCAGGACATTTCTGACAA
AAAGGCAGAAAAGGCTACAGAAGAAGTTTCCAAAAATTTGGTTGCCATGAAAGAAATTCTGTAC
GGCACAAATGAGAAGGAGCCCCAGACAGAGGCCGTAGCACAGCTGGCTCAGGAGCTGTACAATA
GTGGCCTCCTCAGCACCCTGGTGGCTGACTTACAGCTCATTGACTTTGAGGGCAAAAAAGACGT
GGCTCAAATTTTCAACAATATTCTCAGAAGACAAATTGGTACAAGAACTCCTACTGTTGAATAC
ATCTGCACCCAACAGAATATTTTGTTCATGTTATTGAAAGGGTATGAATCTCCAGAAATAGCTC
TTAATTGTGGGATAATGTTAAGAGAATGCATCAGACACGAACCACTCGCAAAAATCATTTTGTG
GTCGGAACAGTTTTATGACTTCTTCAGATATGTTGAAATGTCAACATTTGACATAGCTTCAGAT
GCATTTGCTACGTTCAAGGATTTACTTACAAGACATAAGTTGCTCAGTGCAGAATTTTTGGAGC
AACATTATGATAGATTTTTCAGTGAATATGAAAAGCTACTTCATTCAGAAAATTATGTGACAAA
GAGACAGTCACTGAAGCTTCTGGGTGAACTGCTGTTAGACAGACACAACTTCACTATTATGACG
AAATACATCAGTAAACCTGAGAACCTCAAGTTAATGATGAACCTCCTCCGAGACAAGAGCCGTA
ACATCCAGTTTGAGGCCTTTCACGTGTTCAAGGTGTTTGTGGCCAACCCCAACAAGACACAGCC
CATCCTAGACATCCTCCTCAAGAACCAGACCAAACTCATCGAGTTCCTCAGCAAATTTCAGAAC
GACAGGACGGAAGACGAGCAGTTCAATGATGAGAAGACCTACTTAGTCAAGCAGATCAGGGATT
TGAAGAGAGCAGCCCAGCAAGAAGCCTAGTCTGCAGCACGCCCTGCCGTCCACCCACGCTCAGC
ACTTGCTGTCAGCTCCTCAGCACCAGGCCCTCGGCGCATGGGGAGCATTCTGCTAATCTGCTGT
TAAGTGAACGGTTTTTCATTTTACCTTTTTGTTTTTCAGTCCAGGTTGGAGAACGTAGCTGCTG
CTGCTTGCACATTAGAGCGCACGTGGTCTTTCCCTTGATCTCTGTGTCATTTCAGAACTCACAG
ACTCCATTTGCTACAGGAGTTCTGAACATGGCTGGGTTCATGAAAGCAAATGTACAGTGAGAGT
GGTCTAGGGAAAGAAGAGAACGTGATGACATGGACTGACACCTGCCTGGCCATCAGCACTGCTC
TCTCCAGTCTGTGCAGTGCGGCACGGGCACACCCACCCTGGTGCCGGGTCATCCGTCTCTGCCG
CAGGAAGACGGTGTACACAGGGGTCTACTGGAGATCAGAAGGGAGGACTGCATCCAGTGTGAGC
TTTGGGGAGGATAAAGTTGATGTGCAAATAAATTGATACTGAAACTTA

hide sequence

RefSeq Acc Id:

XM_063267022 ⟹ XP_063123092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,545 - 93,972,539 (+)	NCBI

RefSeq Acc Id:

XM_063267023 ⟹ XP_063123093

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,544 - 93,972,539 (+)	NCBI

RefSeq Acc Id:

XM_063267024 ⟹ XP_063123094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,523 - 93,972,539 (+)	NCBI

RefSeq Acc Id:

XM_063267025 ⟹ XP_063123095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,911,545 - 93,972,539 (+)	NCBI

RefSeq Acc Id:

XM_063267026 ⟹ XP_063123096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	93,912,146 - 93,972,539 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100394	(Get FASTA)	NCBI Sequence Viewer
	NP_001388554	(Get FASTA)	NCBI Sequence Viewer
	XP_006245436	(Get FASTA)	NCBI Sequence Viewer
	XP_006245437	(Get FASTA)	NCBI Sequence Viewer
	XP_063123092	(Get FASTA)	NCBI Sequence Viewer
	XP_063123093	(Get FASTA)	NCBI Sequence Viewer
	XP_063123094	(Get FASTA)	NCBI Sequence Viewer
	XP_063123095	(Get FASTA)	NCBI Sequence Viewer
	XP_063123096	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL75560	(Get FASTA)	NCBI Sequence Viewer
	EDL75561	(Get FASTA)	NCBI Sequence Viewer
	EDL75562	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060020
	ENSRNOP00000060020.2
	ENSRNOP00000071044.2
	ENSRNOP00000076542
	ENSRNOP00000076542.1

RefSeq Acc Id:	NP_001100394 ⟸ NM_001106924
- Peptide Label:	isoform 1
- UniProtKB:	D3ZJ77 (UniProtKB/TrEMBL), A6JWF3 (UniProtKB/TrEMBL), A0A8I5Y8Z7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDR FFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFE AFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRAA QQEA hide sequence

RefSeq Acc Id:	XP_006245437 ⟸ XM_006245375
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL TRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENL KLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFN DEKTYLVKQIRDLKRAAQQEA hide sequence

RefSeq Acc Id:	XP_006245436 ⟸ XM_006245374
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQT EAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL TRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENL KLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFN DEKTYLVKQIRDLKRAAQQEA hide sequence

Ensembl Acc Id:

ENSRNOP00000071044 ⟸ ENSRNOT00000085332

Ensembl Acc Id:

ENSRNOP00000060020 ⟸ ENSRNOT00000066440

Ensembl Acc Id:

ENSRNOP00000076542 ⟸ ENSRNOT00000102022

RefSeq Acc Id:	NP_001388554 ⟸ NM_001401625
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123094 ⟸ XM_063267024
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123093 ⟸ XM_063267023
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123092 ⟸ XM_063267022
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123095 ⟸ XM_063267025
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063123096 ⟸ XM_063267026
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JZH0 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JZH0-F1-model_v2	AlphaFold	A0A0G2JZH0	1-341	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696816

Promoter ID:

EPDNEW_R7341

Type:

initiation region

Name:

Cab39_1

Description:

calcium binding protein 39

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	92,834,343 - 92,834,403	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306390	AgrOrtholog
BioCyc Gene	G2FUF-26925	BioCyc
Ensembl Genes	ENSRNOG00000017297	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066440	ENTREZGENE
	ENSRNOT00000066440.4	UniProtKB/TrEMBL
	ENSRNOT00000085332.3	UniProtKB/TrEMBL
	ENSRNOT00000102022	ENTREZGENE
	ENSRNOT00000102022.2	UniProtKB/TrEMBL
Gene3D-CATH	1.25.10.10	UniProtKB/TrEMBL
InterPro	ARM-like	UniProtKB/TrEMBL
	ARM-type_fold	UniProtKB/TrEMBL
	Mo25	UniProtKB/TrEMBL
KEGG Report	rno:301574	UniProtKB/TrEMBL
NCBI Gene	301574	ENTREZGENE
PANTHER	CALCIUM-BINDING PROTEIN 39	UniProtKB/TrEMBL
	PTHR10182	UniProtKB/TrEMBL
Pfam	Mo25	UniProtKB/TrEMBL
PhenoGen	Cab39	PhenoGen
RatGTEx	ENSRNOG00000017297	RatGTEx
Superfamily-SCOP	ARM-type_fold	UniProtKB/TrEMBL
UniProt	A0A0G2JZH0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y8Z7	ENTREZGENE, UniProtKB/TrEMBL
	A6JWF3	ENTREZGENE, UniProtKB/TrEMBL
	D3ZJ77	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Cab39	calcium binding protein 39	Cab39_predicted	calcium binding protein 39 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Cab39_predicted	calcium binding protein 39 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)