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Gene: Znfx1 (zinc finger, NFX1-type containing 1) Rattus norvegicus

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Symbol:

Znfx1

Name:

zinc finger, NFX1-type containing 1

RGD ID:

1306344

Description:

Predicted to enable RNA binding activity. Predicted to be involved in several processes, including defense response to virus; negative regulation of viral genome replication; and regulatory ncRNA-mediated heterochromatin formation. Predicted to be located in membrane; mitochondrion; and nucleus. Predicted to be part of nuclear RNA-directed RNA polymerase complex. Predicted to be active in cytoplasmic stress granule and mitochondrial outer membrane. Human ortholog(s) of this gene implicated in immunodeficiency 91. Orthologous to human ZNFX1 (zinc finger NFX1-type containing 1); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Ab1-133; hypothetical protein LOC296384; LOC296384; NFX1-type zinc finger-containing protein 1; RGD1306344; similar to Ab1-133; similar to Protein KIAA1404

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNFX1 (zinc finger NFX1-type containing 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Znfx1 (zinc finger, NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znfx1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNFX1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNFX1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znfx1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNFX1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNFX1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znfx1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Znfx1 (zinc finger NFX1-type containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRELID2 (PRELI domain containing 2)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Znfx1 (zinc finger, NFX1-type containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNFX1 (zinc finger NFX1-type containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znfx1 (zinc finger, NFX1-type containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZK1067.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ZK1067.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6204	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG6204	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ECM32	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Xenopus tropicalis (tropical clawed frog):	znfx1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,183,111 - 176,210,812 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	176,183,135 - 176,243,685 (-)	Ensembl				GRCr8
mRatBN7.2	3	155,764,073 - 155,791,777 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	155,764,980 - 155,821,242 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	159,565,363 - 159,593,055 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	168,064,336 - 168,092,028 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	165,806,044 - 165,833,738 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	163,787,101 - 163,847,671 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	163,787,101 - 163,847,671 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	169,947,421 - 170,007,642 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	158,187,092 - 158,246,947 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	154,352,937 - 154,405,628 (-)	NCBI		Celera
RGSC_v3.1	3	158,093,125 - 158,152,983 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

immunodeficiency 91 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

carbon nanotube (ISO)

CGP 52608 (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (EXP,ISO)

crotonaldehyde (ISO)

dibutyl phthalate (ISO)

dimethyl sulfoxide (ISO)

dioxygen (EXP)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

folic acid (ISO)

formaldehyde (ISO)

gallic acid (ISO)

lipopolysaccharide (ISO)

methamphetamine (ISO)

methidathion (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

nitrofen (EXP)

okadaic acid (ISO)

paracetamol (EXP)

paraquat (ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP)

potassium dichromate (ISO)

propanal (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

tetrachloromethane (EXP)

trovafloxacin (ISO)

valproic acid (ISO)

vincristine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of innate immune response (ISO)

defense response to bacterium (ISO)

defense response to virus (IEA,ISO)

immune system process (IEA)

innate immune response (IEA)

negative regulation of viral genome replication (ISO)

regulatory ncRNA-mediated heterochromatin formation (IBA)

Cellular Component

cytoplasm (IEA)

cytoplasmic stress granule (IEA,ISO)

mitochondrial outer membrane (IEA,ISO)

nuclear RNA-directed RNA polymerase complex (IBA)

nucleus (IEA)

Molecular Function

helicase activity (IEA)

metal ion binding (IEA)

RNA binding (IBA,IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:22658674	PMID:22681889	PMID:28295592

Genomics

Comparative Map Data

Znfx1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	176,183,111 - 176,210,812 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	176,183,135 - 176,243,685 (-)	Ensembl				GRCr8
mRatBN7.2	3	155,764,073 - 155,791,777 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	155,764,980 - 155,821,242 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	159,565,363 - 159,593,055 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	168,064,336 - 168,092,028 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	165,806,044 - 165,833,738 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	163,787,101 - 163,847,671 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	163,787,101 - 163,847,671 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	169,947,421 - 170,007,642 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	158,187,092 - 158,246,947 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	154,352,937 - 154,405,628 (-)	NCBI		Celera
RGSC_v3.1	3	158,093,125 - 158,152,983 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

ZNFX1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	49,245,900 - 49,278,057 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	49,237,946 - 49,278,426 (-)	Ensembl			hg38	GRCh38
GRCh37	20	47,862,437 - 47,894,594 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	47,295,844 - 47,328,163 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	20	44,567,051 - 44,599,361 (-)	NCBI		Celera
Cytogenetic Map	20	q13.13	NCBI
HuRef	20	44,611,201 - 44,643,138 (-)	NCBI		HuRef
CHM1_1	20	47,766,837 - 47,799,145 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	51,015,403 - 51,047,555 (-)	NCBI		T2T-CHM13v2.0

Znfx1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	166,877,713 - 166,904,926 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	166,877,713 - 166,904,935 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	167,035,790 - 167,063,015 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	167,035,793 - 167,063,015 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	166,861,293 - 166,888,515 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	166,726,998 - 166,754,970 (-)	NCBI		MGSCv36	mm8
Celera	2	172,975,800 - 173,003,017 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	87.22	NCBI

Znfx1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	8,854,610 - 8,879,821 (+)	Ensembl
ChiLan1.0	NW_004955445	8,854,539 - 8,879,822 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNFX1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	54,988,056 - 55,020,345 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	54,981,159 - 55,013,496 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	45,585,137 - 45,616,769 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	46,649,050 - 46,681,289 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	46,642,081 - 46,681,289 (-)	Ensembl			panPan2	panpan1.1

ZNFX1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	35,932,037 - 35,954,170 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	35,932,523 - 35,954,170 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	35,174,773 - 35,198,816 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	36,637,026 - 36,661,071 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	36,637,026 - 36,661,071 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	35,877,486 - 35,901,505 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	36,012,128 - 36,036,196 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	36,553,609 - 36,577,723 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Znfx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	189,511,167 - 189,536,973 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	4,966,172 - 4,988,922 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	4,964,844 - 4,992,004 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNFX1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	50,925,789 - 50,958,705 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	50,925,789 - 50,958,722 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	57,190,106 - 57,222,272 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNFX1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	14,708,416 - 14,740,061 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666050	63,197,870 - 63,230,152 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znfx1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	6,078,565 - 6,102,715 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624790	6,075,202 - 6,103,736 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Znfx1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	150,913,680 - 150,941,143 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	41
Interacting mature miRNAs:	42
Transcripts:	ENSRNOT00000055127
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
1300113	Bp176	Blood pressure QTL 176	3.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	166376089	177728348	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	161799270	187311134	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat

Markers in Region

RH134778

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	155,823,117 - 155,823,333 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	163,846,095 - 163,846,310	NCBI	Rnor6.0
Rnor_5.0	3	170,006,066 - 170,006,281	UniSTS	Rnor5.0
RGSC_v3.4	3	158,245,369 - 158,245,584	UniSTS	RGSC3.4
Celera	3	154,404,051 - 154,404,266	UniSTS
RH 3.4 Map	3	1442.0	UniSTS
Cytogenetic Map	3	q42	UniSTS

RH141023

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	155,764,182 - 155,764,362 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	163,787,211 - 163,787,390	NCBI	Rnor6.0
Rnor_5.0	3	169,947,531 - 169,947,710	UniSTS	Rnor5.0
RGSC_v3.4	3	158,186,293 - 158,186,472	UniSTS	RGSC3.4
RH 3.4 Map	3	1471.1	UniSTS
Cytogenetic Map	3	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001047860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001389271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001430240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235643	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY325141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226506	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055127 ⟹ ENSRNOP00000052000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	176,183,135 - 176,210,812 (-)	Ensembl
mRatBN7.2 Ensembl	3	155,764,980 - 155,788,863 (-)	Ensembl
Rnor_6.0 Ensembl	3	163,787,117 - 163,814,799 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076833 ⟹ ENSRNOP00000068109

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	176,184,018 - 176,243,685 (-)	Ensembl
mRatBN7.2 Ensembl	3	155,764,980 - 155,821,242 (-)	Ensembl
Rnor_6.0 Ensembl	3	163,787,101 - 163,847,671 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125702 ⟹ ENSRNOP00000104753

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	176,183,135 - 176,210,812 (-)	Ensembl

RefSeq Acc Id:

NM_001389271 ⟹ NP_001376200

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,183,111 - 176,210,812 (-)	NCBI
mRatBN7.2	3	155,764,073 - 155,791,777 (-)	NCBI

RefSeq Acc Id:

XM_006235642 ⟹ XP_006235704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,183,277 - 176,209,346 (-)	NCBI
mRatBN7.2	3	155,764,073 - 155,789,209 (-)	NCBI
Rnor_6.0	3	163,787,101 - 163,812,253 (-)	NCBI
Rnor_5.0	3	169,947,421 - 170,007,642 (-)	NCBI

Sequence:

show sequence

TATTCCTTTTGCCCCAGCAATCATTTTGTAAGAAAGGAAACGAAACCTACGCAGAGGATTAAAT
ATCCTGGCTGAAGGCAAACCAAACAGTATTTTGGGAGTTGATGACACACTCGTCTGCCCCCAAG
CAAGTGAAGGAGGCCAGGATTGGGTCCCTTGGAATCGCCTAAATTGTAACGAATGCGGCAGAAC
TCCTGAGACTCAGACATGGAAGACAGAAGACCTCATCTGGAGGCCACACCCAGGAATCCCCCTA
CCAACCACAGAGGTCCTATAGATGGAGAAGTACCACCAAGAGCTAGAAATCAAGCCAATAACCC
AGCAGCCACCAACCATGCTGGAAGGCATCCTAGGGCCAGCAACCATGCTGCTCCTTTCCGACAG
AGGGAGGAGAGATTTAGGGCTATGGGCAGGAACCCACATCAGGGAAGAAGAAACCATGAAGGGC
ATACCAGTGATGAAGCTAGAGACCAGAGACAAAGCCAGAATGATACCAGGAGGAGAAATGACGA
CCAGGAGGGTAGGAACCACAGACCACCATGGTCCAGTGACAGTTTCCAGCAGTGGCACACCCCA
CTCCAGAAGCCAGCAGAGCAGCCACAGCACACAAAAAGACTGGGCTACAAGTTCCTGGAGAGCC
TCCTGCAGAAAGAGCCCTCTGAGGTGGCCATCACGCTTGCCACAAGCCTAGGGCTCAAGGAGCT
GCTTTCTCATTCTTACATGAAGCCCAGCTTCCTTCAGCTGATCTGCCAAGTTCTCCGGAAGGCT
TGCAGCTCCAGGATAGACCGTCAGAGCATCCTGCATGTGCTGGGTATCCTGAACAACTCAAAGT
TCCTCAGAGTCTGCCTGCCAGCTTATGTGGTGGGAATGATCACTGAGCCTGTCCCTGACATTCG
GAACCAGTACCCAGAACACATAAGCAATATCATCTCCCTCCTCCAGGACCTTGTCAGTGTCTTC
CCTGCCAGTTCTGTGCAGGAAACCTCCATGCTCATCTCTCTACTGCCAACCTCTCTTAATGCTT
TGAGAGCCTCTGGGGTTGACATAGAAGAGGAGACGGAGAAGAATTTGGAAAAGGTGCAGGCCAT
CATTAAACACCTGCAGGAAAAGAGGCGGGAGGGCACTCTGAGAGTGGACACCTACACGCTAGTG
CAGGCGGAGGTAGAAGGCGAGGTTGAGAGCTACCGGGCCATGCCCATCTACCCCACCTACAATG
AGGTGCACTTGGATGAAAGGCCCTTCCTTCGCCCCAACATCATTTCCGGGAAATACGAGAGCAC
CGCTGTCTACCTCGACACTCACTTCCGCCTCCTGCGAGAGGATTTTGTTAGGCCCCTTCGGGAA
GGCATTTTGAAGCTTCTACAGAGCTTCGAGGACCAGTGTCTGAGGAAGAGGAAGTTCGATGACA
TCCGAATCTACTTTGATGCCAGGATTATCACCCCCATGTGCTCAGCATCAGGCATCGTGTACAA
AGTGCAGTTTGACACAAAGCCCCTGAAGTTTGTTCGCTGGCAGAATTCCAAGCGACTACTGTAT
GGGTCATTAGTGTGCATGTCCAAGGACAACTTTGAGACGTTTCTTTTTGCCACCGTTTCAAACC
GAGAGCATGAAGATCTCTGCCAAGGAATTGTCCAGCTGTGCTTCAACGAGCAGAGCCAGCAGCT
GCTTGCAGATGTCCAACCCTCTGACTCTTTCCTCATGGTAGAGACAACAGCCTACTTTGAGGCT
TACCGGCATGTCCTGGAAGGACTACAAGAGGTCCAGGAGGAAGATGTCCCCTTCCAGAGGAACA
TTGTGGAGTGTGACTCCTATGTGAGGGAACCAAGGTACTTGCTAATGGGTGGCAAATACGATTT
CACCCCCCTAATTGAGAATCCCTCAGCCATTAGGAAGTCTCTGAGAGGGGCCGAGGTCTTGAGA
CGTTCTAAGATTAATGTCTTAGACTTTAGCCAGTGGCCAGTCAAAGAAGCCCTGAATCTGGATG
ACTCCCAGATGAAAGCCTTACAATTCGCCCTCACAAGGGAGCTGGCTATCATCCAAGGACCTCC
GGGAACAGGCAAGACTTATGTGGGTCTAAAAATTGTTCAGGCCCTTCTGACCAATAAGTCTGTT
TGGCAAATCAGTGCCCAGAAGTTCCCCATCTTGGTCGTATGTTATACTAATCATGCTTTGGACC
AGTTTCTAGAAGGCATCTACGGGTGTCAGAAGACCAGCATTGTGCGAGTGGGTGGAAGGAGCAA
CAGTGAGATCCTGAAGCAGTTCACCCTGAGGGAGCTGAGGAACAAGCGGGAATTCCGCCGCACC
CTGCCCATGCACCTGCGAAGGGCCTATATGAATATTGTGACAGAGATGAAGGAGTCAGAGCAAA
AGCTTCAGGTGGGGGCCCAGACCCTGGAATGCACCATGCATGGTGTCCTTCGGGAGCAGCACCT
GGAGAAGTACATCGCTCCCCAGCACTGGGAAAGCCTCATGAATGGACCCGTGCAGGATGCTGAC
TGGCTCTGTGTGCAGCCCTCAAAACATTCCATGATAGTCGAATGGCTGGGGCTTGGTGTGGGTT
CCTTCACTCAGAGTGCGTCTCCAGCAGGGCCTGAGAACACAGCCCAGGCAGAAGGGGAGGAGGA
GGAAGAAGGGGAAGAGGAGGGTTCCCTAATTGAGATTGAGGAGGAAGCGGACCTGATCCAAGCT
GATCGAGTGATTGAAGAGGAAGAGGTGGTGAGACCCCGGAGAAGAAAGAAGGAAGAGAACGGGG
CAGACCAGGAGTTGGCTAAAATGCTTTTGGCCATGAGACTGGACCAGGATGTGCCTGGGACTAC
GGCTGGACCGGAACAGGCTGCAGAAGAGTGGGAGACTCAGCGCAGCCAGAAAAAGAAAATGAAG
AGGAGAGTGAAGGTTGAACTTCGCAAACTGAACACCATAACCGAGGCTGAGGCCAGTGCAATCC
AGGATGTCTGGCAGCTGGACCTGAGCTCTCGATGGCAGCTCTATAGACTGTGGCTGCAGATGTA
CCAGTCGGACACTCGCCGGAAGATCCTCAGCTATGAACGCCAGTACCGCACTTGGGCAGAAAGA
ATGGCTGAGCTGAGACTCCAGGAAGACCTTCATATCCTCAAAGATGCCCAGGTTGTAGGCATGA
CAACCACAGGTGCTGCCAAGTACCGCCAGATCCTGCAGCAGGTGGAGCCTCGGATCGTCATTGT
GGAAGAGGCTGCCGAGGTTCTTGAGGCCCATACCATTGCCACACTAAGCAAAGCTTGCCAGCAT
CTTATTCTGATCGGGGACCACCAGCAGCTGCGCCCCAGCGCTAATGTGTATGATCTGGCCAAGA
ACTTCAACCTTGAAGTGTCCCTGTTTGAACGGCTGGTAAAAGTGAACGTCCCCTTCGTCCGTCT
GAATTACCAGCACCGCATGCGTCCTGAGATCGCCCGCCTTTTGACCCCCCACATTTACCAGGAT
CTGGAGAACCATCCTTCTGTTCTCAAGTATGAGCAGATTAAGGGGGTCTCCTCCAACCTTTTCT
TTGTGGAGCACAACTTTCCTGAACAGGAAATCCAAGAAGGCAAAAGTCACCAGAACCAGCATGA
GGCACACTTTGTGGTGGAGCTGTGCCAGTACCTCCTGTGCCAGGAGTACCTGCCCTCCCAGATC
ACCATCCTCACCACCTACACTGGGCAGCTCTTCTGTTTGCGCAAACTCATGCCTGTCAAGACGT
TTGCTGGCATCAAGGTCCATGTAGTGGACAAGTACCAAGGGGAAGAGAATGACGTCATTCTCCT
CTCATTAGTGCGGAGCAACCAAGAGGGCAAGGTGGGCTTCCTCCAGATTCCCAACCGCATCTGT
GTAGCCTTGTCCCGGGCCAAGAAGGGGATGTACTGCATTGGGAACATGCAGATGCTGGCCAAGG
TGCCCTTGTGGAGCAGGATCATCCACACCCTGCGAGAGAACCACCAAATAGGCCCATCCCTCCG
CCTCTGCTGCCAAAACCACCCTGAGACCCACACACTTGTATCCAAAGCTTCTGACTTCCAGAAA
GTACCAGAAGGAGGCTGCAGCCTGCCCTGTGAGTTCCGCTTGGCCTGTGGGCATGTGTGCACAA
GGGCCTGCCACCCATATGACTCCTCCCACAAGGAGTTCCAGTGCATGAAGCCGTGCCAGAAAGT
CATCTGCCAGGATGGGCACCGGTGCCCAAATGTTTGCTTCCAAGAGTGTCAGCCTTGTCAGGTG
AAAGTGCCCAAAATCATCCTTAAGTGTGGCCACAAACAGATGGTCCCTTGTTCAGTGTCAGAGT
CAGATTTTTGTTGCCAGGAGCCTTGCTCCAAGGTACTAAGATGTGGCCACAGATGCAGCCACCT
CTGTGGTGAGAATTGTGTGCGGCTATGTCCAGAAAAGGTCACCGTAAAACTTAACTGTGGGCAC
AGTCAACTGGTGAAGTGTGGCCAGGTGGAAGATCTAAAATACGGGCTGCCAGTCAAGTGTACCA
CCAAGTGTGACACTACCCTAGACTGTGGCCATGCTTGCCCAGGCTCCTGTCACAGCTGTTTTGA
AGGGCGCTTCCATGAGCGCTGTCAACAGGCATGTAAGCGCCTGCTCGTGTGCTCACACAAGTGC
CAGGAGCCCTGCATGGGCGAGTGCCCGCCCTGCCAGCGAACATGTCAGAACCGCTGTGTCCACA
GCCAGTGCAAGAAGAAGTGTGGGGAGCTGTGCAGCCCCTGTGTGGAGCCCTGCACCTGGCGCTG
CCAGCACTACCAATGCACCAAACTCTGCTCAGAGCCCTGTAACCGGCCCCCATGCTACGTGCCT
TGTACTAAGCTGCTGGCTTGCGGCCACCCTTGCATTGGTCTGTGTGGGGAGCCATGTCCAAGGA
AGTGCCGTGTCTGCCACCTGGATGAGGTCACCCAAATCTTTTTTGGCTTTGAGGATGAGCCTGA
TGCCCGCTTTGTGCAGCTGGAAGACTGTAGCCACATCTTTGAGGTACAAGCCCTGGATCGCTAC
ATGAACGAGCAGAAGGATGATGAAGTTGCCATCAAGCTGAAAGTCTGCCCCATTTGTCAGGTGC
CCATCCGCAAAAACCTGAGGTATGGGACCAGCATCAAGCAGCGGCTGGAAGAGATAGAAACCGT
CAAGGAAAAGATCCAGGGCTCTGCAGGAGAGATCGCAGCCAGCCAGGAGCGACTTAAGGCCCTG
CTGAAGAGCAAGACCCTCTTCCACCAGCTGCGGCCTGAAGAATTCCTAATACTTCAAGAGAAGC
TGACCCAGAAAAACCTTTCAGTGAAGGACCTGTGCCTTGTGGAGAATTCTATCAGCTTCTATGA
CCACTTGGCCAACCTGGAGGGGTCCCTGGAGAAGGTGCATCAACTAGAACGGCAGAAGGTGAGG
ACTCGCCTTGAACAGGTCCACGAGTGGCTGGCCAGGAGGCGCCTGGGCTTCAGCAGTCAGGAGT
TGAGTGACCTGCAGAGCGAAATCCAGAGGCTGACCTATTTGGTGAACCTTCTGATGCGCTGCAA
GATCACAGAGGTGAAAGGCAGCATAGCAGAAGAGGTCTCCAGCATCCGGAATATTCTCGAAAAA
ACATGTAAGTTTACCCAGGAAGATGAACAACTTGTGCAGAAGAAGATGGATGCTCTGAAAACCA
CCCTTCCCTGCTCTGGCCTGGGCATCTCAGAGGAGGAACGTGTGCAGATTGTCACTGCCTTGGG
TGTTCCTCGTGGCCATTGGTTCAAGTGCCCCAATGGCCACATCTATGTAATTACTGAGTGTGGG
GGAGCCATGCAGAGGAGTACCTGTCCTGAGTGCCAGGAGGTGATTGGTGGTGAAAATCATACTC
TGGAGAGGAGCAACCACCTTGCCCCTGAGATGGATGGAGCCCAGCACCCTGCCTGGTCTGACAC
AGCCAACAACCTGATGAACTTTGAGATCCACAGGATGATGTAGAAGATGGCACCCCAAGCCTTT
TGCCCTGCCACCTCAGAGCCAGGGTTGGCTCCCCTGTGGAGGAACCAGTTTATTAGTGTCCTTA
GTCTTCGCACTTGTTTAAGGATCCACTTTTAGGGCTTGCCCACATGTGATTCTAGATGTACCCT
GCGCTAGAGTAAGCACTTTACCCCCAGCACTGAGCAGAGCCCACAATTCTCAGCTCCTCTACTG
TAGCAAGTCTGACTCCTGGGAGCAACTGACCTCCACCCGTTGTTAGGGAAATTGGGGCCTGGCA
TGGTCAGCACTTCTGCGCGTGCCCAGTGGGCACCGCTTCTCATGTCCAGGCCCTGGCCTGCATA
CTAACTTCCATTGTAGTTAAGTGCAGCCCAGAGAGCTTTAGGAACCACTTTACCTTCAAGGAGC
ACAAGCACCCAGGCATCCACTCCTCGGGCTCCTGCCCTCCTGGAGATGGAGACCTGTGACAGAC
ACTTCAACTCTCTTCCCAGTTATATAGTCACTGTCCCCAGTGTGGTGGGGCTTCATAGCAGACA
CAGCTGAGTGACCCCTGCACCCTCCTGAAACTTGCACTCAAATAGCAGGGGTGGGTATGTGTGT
CTGTAGGAGAGGTTCTGTGGGGTGCTGTGTGCAGGTTCAGTGTCAGCAGCACCGCCTGTGAGTC
TATCCAGGCACCCTCCCTCCCGGCCTCTGCCTGGGCAGGGTTAGCATGCCAGCAGCTTCTGCAG
GCCGACTCCAGGCCCACTGCCTGCATCTGCATCTCTTTCCATGTTCTTAGAACAGACGTAGGCA
TCTCAGGTCCTTTCTAATGTTGTCTAGGAAAGCCCCTTTCTTATGTATGCATTTCCTTTTTTTG
TCTTTACTATGCACTTTAACCTATAAAGCCAATTAATAAAAATGATTGAAAAAACCTA

hide sequence

RefSeq Acc Id:

XM_006235643 ⟹ XP_006235705

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	176,183,277 - 176,210,779 (-)	NCBI
mRatBN7.2	3	155,764,073 - 155,791,716 (-)	NCBI
Rnor_6.0	3	163,787,101 - 163,814,674 (-)	NCBI
Rnor_5.0	3	169,947,421 - 170,007,642 (-)	NCBI

Sequence:

show sequence

GCCGGTGAGTGGCCTCCGCCCTATCTCGCACCTGCTTCTGCGGCGCTGCGACCGCCGGCGCCCC
GCTCTGTCTCGGGCCGGGTGTCAGGTAACGAATGCGGCAGAACTCCTGAGACTCAGACATGGAA
GACAGAAGACCTCATCTGGAGGCCACACCCAGGAATCCCCCTACCAACCACAGAGGTCCTATAG
ATGGAGAAGTACCACCAAGAGCTAGAAATCAAGCCAATAACCCAGCAGCCACCAACCATGCTGG
AAGGCATCCTAGGGCCAGCAACCATGCTGCTCCTTTCCGACAGAGGGAGGAGAGATTTAGGGCT
ATGGGCAGGAACCCACATCAGGGAAGAAGAAACCATGAAGGGCATACCAGTGATGAAGCTAGAG
ACCAGAGACAAAGCCAGAATGATACCAGGAGGAGAAATGACGACCAGGAGGGTAGGAACCACAG
ACCACCATGGTCCAGTGACAGTTTCCAGCAGTGGCACACCCCACTCCAGAAGCCAGCAGAGCAG
CCACAGCACACAAAAAGACTGGGCTACAAGTTCCTGGAGAGCCTCCTGCAGAAAGAGCCCTCTG
AGGTGGCCATCACGCTTGCCACAAGCCTAGGGCTCAAGGAGCTGCTTTCTCATTCTTACATGAA
GCCCAGCTTCCTTCAGCTGATCTGCCAAGTTCTCCGGAAGGCTTGCAGCTCCAGGATAGACCGT
CAGAGCATCCTGCATGTGCTGGGTATCCTGAACAACTCAAAGTTCCTCAGAGTCTGCCTGCCAG
CTTATGTGGTGGGAATGATCACTGAGCCTGTCCCTGACATTCGGAACCAGTACCCAGAACACAT
AAGCAATATCATCTCCCTCCTCCAGGACCTTGTCAGTGTCTTCCCTGCCAGTTCTGTGCAGGAA
ACCTCCATGCTCATCTCTCTACTGCCAACCTCTCTTAATGCTTTGAGAGCCTCTGGGGTTGACA
TAGAAGAGGAGACGGAGAAGAATTTGGAAAAGGTGCAGGCCATCATTAAACACCTGCAGGAAAA
GAGGCGGGAGGGCACTCTGAGAGTGGACACCTACACGCTAGTGCAGGCGGAGGTAGAAGGCGAG
GTTGAGAGCTACCGGGCCATGCCCATCTACCCCACCTACAATGAGGTGCACTTGGATGAAAGGC
CCTTCCTTCGCCCCAACATCATTTCCGGGAAATACGAGAGCACCGCTGTCTACCTCGACACTCA
CTTCCGCCTCCTGCGAGAGGATTTTGTTAGGCCCCTTCGGGAAGGCATTTTGAAGCTTCTACAG
AGCTTCGAGGACCAGTGTCTGAGGAAGAGGAAGTTCGATGACATCCGAATCTACTTTGATGCCA
GGATTATCACCCCCATGTGCTCAGCATCAGGCATCGTGTACAAAGTGCAGTTTGACACAAAGCC
CCTGAAGTTTGTTCGCTGGCAGAATTCCAAGCGACTACTGTATGGGTCATTAGTGTGCATGTCC
AAGGACAACTTTGAGACGTTTCTTTTTGCCACCGTTTCAAACCGAGAGCATGAAGATCTCTGCC
AAGGAATTGTCCAGCTGTGCTTCAACGAGCAGAGCCAGCAGCTGCTTGCAGATGTCCAACCCTC
TGACTCTTTCCTCATGGTAGAGACAACAGCCTACTTTGAGGCTTACCGGCATGTCCTGGAAGGA
CTACAAGAGGTCCAGGAGGAAGATGTCCCCTTCCAGAGGAACATTGTGGAGTGTGACTCCTATG
TGAGGGAACCAAGGTACTTGCTAATGGGTGGCAAATACGATTTCACCCCCCTAATTGAGAATCC
CTCAGCCATTAGGAAGTCTCTGAGAGGGGCCGAGGTCTTGAGACGTTCTAAGATTAATGTCTTA
GACTTTAGCCAGTGGCCAGTCAAAGAAGCCCTGAATCTGGATGACTCCCAGATGAAAGCCTTAC
AATTCGCCCTCACAAGGGAGCTGGCTATCATCCAAGGACCTCCGGGAACAGGCAAGACTTATGT
GGGTCTAAAAATTGTTCAGGCCCTTCTGACCAATAAGTCTGTTTGGCAAATCAGTGCCCAGAAG
TTCCCCATCTTGGTCGTATGTTATACTAATCATGCTTTGGACCAGTTTCTAGAAGGCATCTACG
GGTGTCAGAAGACCAGCATTGTGCGAGTGGGTGGAAGGAGCAACAGTGAGATCCTGAAGCAGTT
CACCCTGAGGGAGCTGAGGAACAAGCGGGAATTCCGCCGCACCCTGCCCATGCACCTGCGAAGG
GCCTATATGAATATTGTGACAGAGATGAAGGAGTCAGAGCAAAAGCTTCAGGTGGGGGCCCAGA
CCCTGGAATGCACCATGCATGGTGTCCTTCGGGAGCAGCACCTGGAGAAGTACATCGCTCCCCA
GCACTGGGAAAGCCTCATGAATGGACCCGTGCAGGATGCTGACTGGCTCTGTGTGCAGCCCTCA
AAACATTCCATGATAGTCGAATGGCTGGGGCTTGGTGTGGGTTCCTTCACTCAGAGTGCGTCTC
CAGCAGGGCCTGAGAACACAGCCCAGGCAGAAGGGGAGGAGGAGGAAGAAGGGGAAGAGGAGGG
TTCCCTAATTGAGATTGAGGAGGAAGCGGACCTGATCCAAGCTGATCGAGTGATTGAAGAGGAA
GAGGTGGTGAGACCCCGGAGAAGAAAGAAGGAAGAGAACGGGGCAGACCAGGAGTTGGCTAAAA
TGCTTTTGGCCATGAGACTGGACCAGGATGTGCCTGGGACTACGGCTGGACCGGAACAGGCTGC
AGAAGAGTGGGAGACTCAGCGCAGCCAGAAAAAGAAAATGAAGAGGAGAGTGAAGGTTGAACTT
CGCAAACTGAACACCATAACCGAGGCTGAGGCCAGTGCAATCCAGGATGTCTGGCAGCTGGACC
TGAGCTCTCGATGGCAGCTCTATAGACTGTGGCTGCAGATGTACCAGTCGGACACTCGCCGGAA
GATCCTCAGCTATGAACGCCAGTACCGCACTTGGGCAGAAAGAATGGCTGAGCTGAGACTCCAG
GAAGACCTTCATATCCTCAAAGATGCCCAGGTTGTAGGCATGACAACCACAGGTGCTGCCAAGT
ACCGCCAGATCCTGCAGCAGGTGGAGCCTCGGATCGTCATTGTGGAAGAGGCTGCCGAGGTTCT
TGAGGCCCATACCATTGCCACACTAAGCAAAGCTTGCCAGCATCTTATTCTGATCGGGGACCAC
CAGCAGCTGCGCCCCAGCGCTAATGTGTATGATCTGGCCAAGAACTTCAACCTTGAAGTGTCCC
TGTTTGAACGGCTGGTAAAAGTGAACGTCCCCTTCGTCCGTCTGAATTACCAGCACCGCATGCG
TCCTGAGATCGCCCGCCTTTTGACCCCCCACATTTACCAGGATCTGGAGAACCATCCTTCTGTT
CTCAAGTATGAGCAGATTAAGGGGGTCTCCTCCAACCTTTTCTTTGTGGAGCACAACTTTCCTG
AACAGGAAATCCAAGAAGGCAAAAGTCACCAGAACCAGCATGAGGCACACTTTGTGGTGGAGCT
GTGCCAGTACCTCCTGTGCCAGGAGTACCTGCCCTCCCAGATCACCATCCTCACCACCTACACT
GGGCAGCTCTTCTGTTTGCGCAAACTCATGCCTGTCAAGACGTTTGCTGGCATCAAGGTCCATG
TAGTGGACAAGTACCAAGGGGAAGAGAATGACGTCATTCTCCTCTCATTAGTGCGGAGCAACCA
AGAGGGCAAGGTGGGCTTCCTCCAGATTCCCAACCGCATCTGTGTAGCCTTGTCCCGGGCCAAG
AAGGGGATGTACTGCATTGGGAACATGCAGATGCTGGCCAAGGTGCCCTTGTGGAGCAGGATCA
TCCACACCCTGCGAGAGAACCACCAAATAGGCCCATCCCTCCGCCTCTGCTGCCAAAACCACCC
TGAGACCCACACACTTGTATCCAAAGCTTCTGACTTCCAGAAAGTACCAGAAGGAGGCTGCAGC
CTGCCCTGTGAGTTCCGCTTGGCCTGTGGGCATGTGTGCACAAGGGCCTGCCACCCATATGACT
CCTCCCACAAGGAGTTCCAGTGCATGAAGCCGTGCCAGAAAGTCATCTGCCAGGATGGGCACCG
GTGCCCAAATGTTTGCTTCCAAGAGTGTCAGCCTTGTCAGGTGAAAGTGCCCAAAATCATCCTT
AAGTGTGGCCACAAACAGATGGTCCCTTGTTCAGTGTCAGAGTCAGATTTTTGTTGCCAGGAGC
CTTGCTCCAAGGTACTAAGATGTGGCCACAGATGCAGCCACCTCTGTGGTGAGAATTGTGTGCG
GCTATGTCCAGAAAAGGTCACCGTAAAACTTAACTGTGGGCACAGTCAACTGGTGAAGTGTGGC
CAGGTGGAAGATCTAAAATACGGGCTGCCAGTCAAGTGTACCACCAAGTGTGACACTACCCTAG
ACTGTGGCCATGCTTGCCCAGGCTCCTGTCACAGCTGTTTTGAAGGGCGCTTCCATGAGCGCTG
TCAACAGGCATGTAAGCGCCTGCTCGTGTGCTCACACAAGTGCCAGGAGCCCTGCATGGGCGAG
TGCCCGCCCTGCCAGCGAACATGTCAGAACCGCTGTGTCCACAGCCAGTGCAAGAAGAAGTGTG
GGGAGCTGTGCAGCCCCTGTGTGGAGCCCTGCACCTGGCGCTGCCAGCACTACCAATGCACCAA
ACTCTGCTCAGAGCCCTGTAACCGGCCCCCATGCTACGTGCCTTGTACTAAGCTGCTGGCTTGC
GGCCACCCTTGCATTGGTCTGTGTGGGGAGCCATGTCCAAGGAAGTGCCGTGTCTGCCACCTGG
ATGAGGTCACCCAAATCTTTTTTGGCTTTGAGGATGAGCCTGATGCCCGCTTTGTGCAGCTGGA
AGACTGTAGCCACATCTTTGAGGTACAAGCCCTGGATCGCTACATGAACGAGCAGAAGGATGAT
GAAGTTGCCATCAAGCTGAAAGTCTGCCCCATTTGTCAGGTGCCCATCCGCAAAAACCTGAGGT
ATGGGACCAGCATCAAGCAGCGGCTGGAAGAGATAGAAACCGTCAAGGAAAAGATCCAGGGCTC
TGCAGGAGAGATCGCAGCCAGCCAGGAGCGACTTAAGGCCCTGCTGAAGAGCAAGACCCTCTTC
CACCAGCTGCGGCCTGAAGAATTCCTAATACTTCAAGAGAAGCTGACCCAGAAAAACCTTTCAG
TGAAGGACCTGTGCCTTGTGGAGAATTCTATCAGCTTCTATGACCACTTGGCCAACCTGGAGGG
GTCCCTGGAGAAGGTGCATCAACTAGAACGGCAGAAGGTGAGGACTCGCCTTGAACAGGTCCAC
GAGTGGCTGGCCAGGAGGCGCCTGGGCTTCAGCAGTCAGGAGTTGAGTGACCTGCAGAGCGAAA
TCCAGAGGCTGACCTATTTGGTGAACCTTCTGATGCGCTGCAAGATCACAGAGGTGAAAGGCAG
CATAGCAGAAGAGGTCTCCAGCATCCGGAATATTCTCGAAAAAACATGTAAGTTTACCCAGGAA
GATGAACAACTTGTGCAGAAGAAGATGGATGCTCTGAAAACCACCCTTCCCTGCTCTGGCCTGG
GCATCTCAGAGGAGGAACGTGTGCAGATTGTCACTGCCTTGGGTGTTCCTCGTGGCCATTGGTT
CAAGTGCCCCAATGGCCACATCTATGTAATTACTGAGTGTGGGGGAGCCATGCAGAGGAGTACC
TGTCCTGAGTGCCAGGAGGTGATTGGTGGTGAAAATCATACTCTGGAGAGGAGCAACCACCTTG
CCCCTGAGATGGATGGAGCCCAGCACCCTGCCTGGTCTGACACAGCCAACAACCTGATGAACTT
TGAGATCCACAGGATGATGTAGAAGATGGCACCCCAAGCCTTTTGCCCTGCCACCTCAGAGCCA
GGGTTGGCTCCCCTGTGGAGGAACCAGTTTATTAGTGTCCTTAGTCTTCGCACTTGTTTAAGGA
TCCACTTTTAGGGCTTGCCCACATGTGATTCTAGATGTACCCTGCGCTAGAGTAAGCACTTTAC
CCCCAGCACTGAGCAGAGCCCACAATTCTCAGCTCCTCTACTGTAGCAAGTCTGACTCCTGGGA
GCAACTGACCTCCACCCGTTGTTAGGGAAATTGGGGCCTGGCATGGTCAGCACTTCTGCGCGTG
CCCAGTGGGCACCGCTTCTCATGTCCAGGCCCTGGCCTGCATACTAACTTCCATTGTAGTTAAG
TGCAGCCCAGAGAGCTTTAGGAACCACTTTACCTTCAAGGAGCACAAGCACCCAGGCATCCACT
CCTCGGGCTCCTGCCCTCCTGGAGATGGAGACCTGTGACAGACACTTCAACTCTCTTCCCAGTT
ATATAGTCACTGTCCCCAGTGTGGTGGGGCTTCATAGCAGACACAGCTGAGTGACCCCTGCACC
CTCCTGAAACTTGCACTCAAATAGCAGGGGTGGGTATGTGTGTCTGTAGGAGAGGTTCTGTGGG
GTGCTGTGTGCAGGTTCAGTGTCAGCAGCACCGCCTGTGAGTCTATCCAGGCACCCTCCCTCCC
GGCCTCTGCCTGGGCAGGGTTAGCATGCCAGCAGCTTCTGCAGGCCGACTCCAGGCCCACTGCC
TGCATCTGCATCTCTTTCCATGTTCTTAGAACAGACGTAGGCATCTCAGGTCCTTTCTAATGTT
GTCTAGGAAAGCCCCTTTCTTATGTATGCATTTCCTTTTTTTGTCTTTACTATGCACTTTAACC
TATAAAGCCAATTAATAAAAATGATTGAAAAAACCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001376200	(Get FASTA)	NCBI Sequence Viewer
	NP_001417169	(Get FASTA)	NCBI Sequence Viewer
	XP_006235704	(Get FASTA)	NCBI Sequence Viewer
	XP_006235705	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAP92542	(Get FASTA)	NCBI Sequence Viewer
	EDL96425	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052000
	ENSRNOP00000052000.3
	ENSRNOP00000068109
	ENSRNOP00000068109.2
	ENSRNOP00000104753.1

RefSeq Acc Id:

XP_006235705 ⟸ XM_006235643

- Peptide Label:

isoform X1

- Sequence:

show sequence

MEDRRPHLEATPRNPPTNHRGPIDGEVPPRARNQANNPAATNHAGRHPRASNHAAPFRQREERF
RAMGRNPHQGRRNHEGHTSDEARDQRQSQNDTRRRNDDQEGRNHRPPWSSDSFQQWHTPLQKPA
EQPQHTKRLGYKFLESLLQKEPSEVAITLATSLGLKELLSHSYMKPSFLQLICQVLRKACSSRI
DRQSILHVLGILNNSKFLRVCLPAYVVGMITEPVPDIRNQYPEHISNIISLLQDLVSVFPASSV
QETSMLISLLPTSLNALRASGVDIEEETEKNLEKVQAIIKHLQEKRREGTLRVDTYTLVQAEVE
GEVESYRAMPIYPTYNEVHLDERPFLRPNIISGKYESTAVYLDTHFRLLREDFVRPLREGILKL
LQSFEDQCLRKRKFDDIRIYFDARIITPMCSASGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVC
MSKDNFETFLFATVSNREHEDLCQGIVQLCFNEQSQQLLADVQPSDSFLMVETTAYFEAYRHVL
EGLQEVQEEDVPFQRNIVECDSYVREPRYLLMGGKYDFTPLIENPSAIRKSLRGAEVLRRSKIN
VLDFSQWPVKEALNLDDSQMKALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQISA
QKFPILVVCYTNHALDQFLEGIYGCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRTLPMHL
RRAYMNIVTEMKESEQKLQVGAQTLECTMHGVLREQHLEKYIAPQHWESLMNGPVQDADWLCVQ
PSKHSMIVEWLGLGVGSFTQSASPAGPENTAQAEGEEEEEGEEEGSLIEIEEEADLIQADRVIE
EEEVVRPRRRKKEENGADQELAKMLLAMRLDQDVPGTTAGPEQAAEEWETQRSQKKKMKRRVKV
ELRKLNTITEAEASAIQDVWQLDLSSRWQLYRLWLQMYQSDTRRKILSYERQYRTWAERMAELR
LQEDLHILKDAQVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIG
DHQQLRPSANVYDLAKNFNLEVSLFERLVKVNVPFVRLNYQHRMRPEIARLLTPHIYQDLENHP
SVLKYEQIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTT
YTGQLFCLRKLMPVKTFAGIKVHVVDKYQGEENDVILLSLVRSNQEGKVGFLQIPNRICVALSR
AKKGMYCIGNMQMLAKVPLWSRIIHTLRENHQIGPSLRLCCQNHPETHTLVSKASDFQKVPEGG
CSLPCEFRLACGHVCTRACHPYDSSHKEFQCMKPCQKVICQDGHRCPNVCFQECQPCQVKVPKI
ILKCGHKQMVPCSVSESDFCCQEPCSKVLRCGHRCSHLCGENCVRLCPEKVTVKLNCGHSQLVK
CGQVEDLKYGLPVKCTTKCDTTLDCGHACPGSCHSCFEGRFHERCQQACKRLLVCSHKCQEPCM
GECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCTWRCQHYQCTKLCSEPCNRPPCYVPCTKLL
ACGHPCIGLCGEPCPRKCRVCHLDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQK
DDEVAIKLKVCPICQVPIRKNLRYGTSIKQRLEEIETVKEKIQGSAGEIAASQERLKALLKSKT
LFHQLRPEEFLILQEKLTQKNLSVKDLCLVENSISFYDHLANLEGSLEKVHQLERQKVRTRLEQ
VHEWLARRRLGFSSQELSDLQSEIQRLTYLVNLLMRCKITEVKGSIAEEVSSIRNILEKTCKFT
QEDEQLVQKKMDALKTTLPCSGLGISEEERVQIVTALGVPRGHWFKCPNGHIYVITECGGAMQR
STCPECQEVIGGENHTLERSNHLAPEMDGAQHPAWSDTANNLMNFEIHRMM

hide sequence

RefSeq Acc Id:	XP_006235704 ⟸ XM_006235642
- Peptide Label:	isoform X1
- UniProtKB:	F1LMA9 (UniProtKB/TrEMBL), Q7TP99 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEDRRPHLEATPRNPPTNHRGPIDGEVPPRARNQANNPAATNHAGRHPRASNHAAPFRQREERF RAMGRNPHQGRRNHEGHTSDEARDQRQSQNDTRRRNDDQEGRNHRPPWSSDSFQQWHTPLQKPA EQPQHTKRLGYKFLESLLQKEPSEVAITLATSLGLKELLSHSYMKPSFLQLICQVLRKACSSRI DRQSILHVLGILNNSKFLRVCLPAYVVGMITEPVPDIRNQYPEHISNIISLLQDLVSVFPASSV QETSMLISLLPTSLNALRASGVDIEEETEKNLEKVQAIIKHLQEKRREGTLRVDTYTLVQAEVE GEVESYRAMPIYPTYNEVHLDERPFLRPNIISGKYESTAVYLDTHFRLLREDFVRPLREGILKL LQSFEDQCLRKRKFDDIRIYFDARIITPMCSASGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVC MSKDNFETFLFATVSNREHEDLCQGIVQLCFNEQSQQLLADVQPSDSFLMVETTAYFEAYRHVL EGLQEVQEEDVPFQRNIVECDSYVREPRYLLMGGKYDFTPLIENPSAIRKSLRGAEVLRRSKIN VLDFSQWPVKEALNLDDSQMKALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQISA QKFPILVVCYTNHALDQFLEGIYGCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRTLPMHL RRAYMNIVTEMKESEQKLQVGAQTLECTMHGVLREQHLEKYIAPQHWESLMNGPVQDADWLCVQ PSKHSMIVEWLGLGVGSFTQSASPAGPENTAQAEGEEEEEGEEEGSLIEIEEEADLIQADRVIE EEEVVRPRRRKKEENGADQELAKMLLAMRLDQDVPGTTAGPEQAAEEWETQRSQKKKMKRRVKV ELRKLNTITEAEASAIQDVWQLDLSSRWQLYRLWLQMYQSDTRRKILSYERQYRTWAERMAELR LQEDLHILKDAQVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIG DHQQLRPSANVYDLAKNFNLEVSLFERLVKVNVPFVRLNYQHRMRPEIARLLTPHIYQDLENHP SVLKYEQIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTT YTGQLFCLRKLMPVKTFAGIKVHVVDKYQGEENDVILLSLVRSNQEGKVGFLQIPNRICVALSR AKKGMYCIGNMQMLAKVPLWSRIIHTLRENHQIGPSLRLCCQNHPETHTLVSKASDFQKVPEGG CSLPCEFRLACGHVCTRACHPYDSSHKEFQCMKPCQKVICQDGHRCPNVCFQECQPCQVKVPKI ILKCGHKQMVPCSVSESDFCCQEPCSKVLRCGHRCSHLCGENCVRLCPEKVTVKLNCGHSQLVK CGQVEDLKYGLPVKCTTKCDTTLDCGHACPGSCHSCFEGRFHERCQQACKRLLVCSHKCQEPCM GECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCTWRCQHYQCTKLCSEPCNRPPCYVPCTKLL ACGHPCIGLCGEPCPRKCRVCHLDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQK DDEVAIKLKVCPICQVPIRKNLRYGTSIKQRLEEIETVKEKIQGSAGEIAASQERLKALLKSKT LFHQLRPEEFLILQEKLTQKNLSVKDLCLVENSISFYDHLANLEGSLEKVHQLERQKVRTRLEQ VHEWLARRRLGFSSQELSDLQSEIQRLTYLVNLLMRCKITEVKGSIAEEVSSIRNILEKTCKFT QEDEQLVQKKMDALKTTLPCSGLGISEEERVQIVTALGVPRGHWFKCPNGHIYVITECGGAMQR STCPECQEVIGGENHTLERSNHLAPEMDGAQHPAWSDTANNLMNFEIHRMM hide sequence

Ensembl Acc Id:

ENSRNOP00000052000 ⟸ ENSRNOT00000055127

Ensembl Acc Id:

ENSRNOP00000068109 ⟸ ENSRNOT00000076833

RefSeq Acc Id:	NP_001376200 ⟸ NM_001389271
- UniProtKB:	F1LMA9 (UniProtKB/TrEMBL), Q7TP99 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000104753 ⟸ ENSRNOT00000125702

Protein Domains

RZ-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q7TP99-F1-model_v2	AlphaFold	Q7TP99	1-2018	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692702

Promoter ID:

EPDNEW_R3214

Type:

multiple initiation site

Name:

Znfx1_1

Description:

zinc finger, NFX1-type containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	163,814,710 - 163,814,770	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306344	AgrOrtholog
BioCyc Gene	G2FUF-46754	BioCyc
Ensembl Genes	ENSRNOG00000008194	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055127	ENTREZGENE
	ENSRNOT00000055127.6	UniProtKB/TrEMBL
	ENSRNOT00000076833	ENTREZGENE
	ENSRNOT00000076833.4	UniProtKB/TrEMBL
	ENSRNOT00000125702.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	DNA2/NAM7-like	UniProtKB/TrEMBL
	DNA2/NAM7_AAA_11	UniProtKB/TrEMBL
	DNA2/NAM7_like_AAA_12	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	SF1_C_Upf1	UniProtKB/TrEMBL
	ZF_RZ_dom	UniProtKB/TrEMBL
	Znf_NFX1	UniProtKB/TrEMBL
	ZNFX1	UniProtKB/TrEMBL
NCBI Gene	296384	ENTREZGENE
PANTHER	NFX1-TYPE ZINC FINGER-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR10887	UniProtKB/TrEMBL
Pfam	AAA_11	UniProtKB/TrEMBL
	AAA_12	UniProtKB/TrEMBL
	DUF6539	UniProtKB/TrEMBL
	ZNFX1	UniProtKB/TrEMBL
PhenoGen	Znfx1	PhenoGen
PROSITE	ZF_RZ	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008194	RatGTEx
SMART	ZnF_NFX	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A096MJF4_RAT	UniProtKB/TrEMBL
	A0ABK0LRY4_RAT	UniProtKB/TrEMBL
	F1LMA9	ENTREZGENE, UniProtKB/TrEMBL
	Q7TP99	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Znfx1	zinc finger, NFX1-type containing 1	LOC686701	similar to Protein KIAA1404	Data merged from RGD:1593758	1643240	APPROVED
2010-04-23	Znfx1	zinc finger, NFX1-type containing 1	RGD1306344	similar to Ab1-133	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC686701	similar to Protein KIAA1404			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	RGD1306344	similar to Ab1-133	RGD1306344_predicted	similar to Ab1-133 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306344_predicted	similar to Ab1-133 (predicted)	LOC296384_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC296384_predicted	similar to Ab1-133 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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