Rpl3l (ribosomal protein L3-like) - Rat Genome Database

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Gene: Rpl3l (ribosomal protein L3-like) Rattus norvegicus
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Symbol: Rpl3l
Name: ribosomal protein L3-like
RGD ID: 1306315
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of myotube differentiation; regulation of striated muscle tissue development; and translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2D. Orthologous to human RPL3L (ribosomal protein L3 like); INTERACTS WITH 6-propyl-2-thiouracil; alpha-Zearalanol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L3-like; LOC287122; ribosomal protein uL3-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,258,446 - 14,268,989 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1014,258,418 - 14,268,988 (+)EnsemblGRCr8
mRatBN7.21013,753,914 - 13,764,458 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,753,886 - 13,764,457 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1018,500,711 - 18,511,038 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,989,571 - 17,999,898 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,488,767 - 13,499,098 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,094,769 - 14,105,312 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,094,754 - 14,105,308 (+)Ensemblrn6Rnor6.0
Rnor_5.01013,910,497 - 13,921,040 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41013,981,948 - 13,992,491 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1013,433,633 - 13,444,176 (+)NCBICelera
RGSC_v3.11013,981,939 - 14,092,927 (+)NCBI
Cytogenetic Map10q12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12962325   PMID:19946888  


Genomics

Comparative Map Data
Rpl3l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,258,446 - 14,268,989 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1014,258,418 - 14,268,988 (+)EnsemblGRCr8
mRatBN7.21013,753,914 - 13,764,458 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,753,886 - 13,764,457 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1018,500,711 - 18,511,038 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,989,571 - 17,999,898 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,488,767 - 13,499,098 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,094,769 - 14,105,312 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,094,754 - 14,105,308 (+)Ensemblrn6Rnor6.0
Rnor_5.01013,910,497 - 13,921,040 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41013,981,948 - 13,992,491 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1013,433,633 - 13,444,176 (+)NCBICelera
RGSC_v3.11013,981,939 - 14,092,927 (+)NCBI
Cytogenetic Map10q12NCBI
RPL3L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,943,974 - 1,954,689 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,943,968 - 1,957,606 (-)Ensemblhg38GRCh38
GRCh37161,993,975 - 2,004,690 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,934,581 - 1,944,680 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34161,934,581 - 1,944,680NCBI
Celera162,206,784 - 2,216,862 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,919,182 - 1,929,274 (-)NCBIHuRef
CHM1_1161,994,524 - 2,004,626 (-)NCBICHM1_1
T2T-CHM13v2.0161,963,946 - 1,975,094 (-)NCBIT2T-CHM13v2.0
Rpl3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,946,800 - 24,955,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,946,794 - 24,955,117 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381724,727,826 - 24,736,143 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,727,820 - 24,736,143 (+)Ensemblmm10GRCm38
MGSCv371724,864,774 - 24,873,094 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361724,460,285 - 24,463,745 (+)NCBIMGSCv36mm8
Celera1725,250,910 - 25,259,506 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.52NCBI
Rpl3l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544215,313,729 - 15,322,578 (+)Ensembl
ChiLan1.0NW_00495544215,311,336 - 15,322,578 (+)NCBIChiLan1.0ChiLan1.0
RPL3L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,392,806 - 2,402,560 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1166,174,718 - 6,185,119 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016749,186 - 760,331 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1162,033,466 - 2,043,719 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl162,033,466 - 2,043,719 (-)EnsemblpanPan2panpan1.1
RPL3L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,971,098 - 38,981,466 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,974,018 - 38,982,012 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha640,213,023 - 40,220,944 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0639,290,349 - 39,298,272 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl639,290,443 - 39,298,276 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1638,967,123 - 38,975,038 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,939,432 - 38,947,353 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,418,319 - 39,426,245 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl3l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,623,130 - 104,630,679 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366942,078,903 - 2,086,354 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366942,078,903 - 2,086,333 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL3L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,007,868 - 40,016,699 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1340,004,907 - 40,016,702 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPL3L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,841,959 - 1,853,944 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,842,604 - 1,853,444 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606829,225,541 - 29,234,560 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl3l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913301,938 - 310,469 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624913301,921 - 310,655 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl3l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v192,023,036 - 2,023,838 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl3l
28 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:58
Interacting mature miRNAs:59
Transcripts:ENSRNOT00000019660
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 12 60 131 85 83 53 80 53 6 287 173 11 103 43 74 30 14 14

Sequence


Ensembl Acc Id: ENSRNOT00000019660   ⟹   ENSRNOP00000019660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1014,258,418 - 14,268,988 (+)Ensembl
mRatBN7.2 Ensembl1013,753,886 - 13,764,457 (+)Ensembl
Rnor_6.0 Ensembl1014,094,754 - 14,105,308 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112206   ⟹   ENSRNOP00000089495
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,753,886 - 13,762,699 (+)Ensembl
RefSeq Acc Id: NM_001191589   ⟹   NP_001178518
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,258,446 - 14,268,989 (+)NCBI
mRatBN7.21013,753,914 - 13,764,458 (+)NCBI
Rnor_6.01014,094,769 - 14,105,312 (+)NCBI
Rnor_5.01013,910,497 - 13,921,040 (+)NCBI
Celera1013,433,633 - 13,444,176 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001178518 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019660
  ENSRNOP00000019660.5
RefSeq Acc Id: NP_001178518   ⟸   NM_001191589
- UniProtKB: D4A9G1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019660   ⟸   ENSRNOT00000019660
Ensembl Acc Id: ENSRNOP00000089495   ⟸   ENSRNOT00000112206

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9G1-F1-model_v2 AlphaFold D4A9G1 1-407 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697026
Promoter ID:EPDNEW_R7551
Type:initiation region
Name:Rpl3l_1
Description:ribosomal protein L3-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01014,094,749 - 14,094,809EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306315 AgrOrtholog
BioCyc Gene G2FUF-25825 BioCyc
Ensembl Genes ENSRNOG00000014641 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019660 ENTREZGENE
  ENSRNOT00000019660.9 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1430.10 UniProtKB/TrEMBL
  4.10.960.10 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro L3_arc_euk UniProtKB/TrEMBL
  Ribosomal_L3 UniProtKB/TrEMBL
  Ribosomal_L3_CS UniProtKB/TrEMBL
  Ribosomal_L3_dom_3_arc_sf UniProtKB/TrEMBL
  Transl_elong_init/rib_B-barrel UniProtKB/TrEMBL
KEGG Report rno:287122 UniProtKB/TrEMBL
NCBI Gene 287122 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE UniProtKB/TrEMBL
  PTHR11363 UniProtKB/TrEMBL
Pfam Ribosomal_L3 UniProtKB/TrEMBL
PhenoGen Rpl3l PhenoGen
PROSITE RIBOSOMAL_L3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014641 RatGTEx
Superfamily-SCOP Translat_factor UniProtKB/TrEMBL
UniProt D4A9G1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rpl3l  ribosomal protein L3-like   Rpl3l_predicted  ribosomal protein L3-like (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rpl3l_predicted  ribosomal protein L3-like (predicted)      Symbol and Name status set to approved 70820 APPROVED