Fam133b (family with sequence similarity 133, member B) - Rat Genome Database

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Gene: Fam133b (family with sequence similarity 133, member B) Rattus norvegicus
Analyze
Symbol: Fam133b
Name: family with sequence similarity 133, member B
RGD ID: 1306302
Description: Orthologous to several human genes including FAM133B (family with sequence similarity 133 member B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC362320; LOC362320; RGD1306302; similar to RIKEN cDNA 5830415L20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,544,458 - 31,571,056 (-)NCBIGRCr8
mRatBN7.2430,589,646 - 30,616,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,589,635 - 30,616,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,562,476 - 35,588,799 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,488,560 - 31,514,883 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,884,597 - 29,910,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,728,883 - 27,755,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,730,051 - 27,755,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,632,125 - 27,658,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4427,305,922 - 27,332,221 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1427,332,822 - 27,349,419 (-)NCBI
Celera426,014,093 - 26,040,392 (-)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam133bRatpleomorphic xanthoastrocytoma  ISOFAM133B (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358

1 to 20 of 50 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Fam133bRat1,2-dichloroethane decreases expressionISOFam133b (Mus musculus)6480464ethylene dichloride results in decreased expression of FAM133B mRNACTDPMID:28960355
Fam133bRat1,2-dimethylhydrazine increases expressionISOFam133b (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of FAM133B mRNACTDPMID:22206623
Fam133bRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of FAM133B mRNACTDPMID:33387578
Fam133bRat2-hydroxypropanoic acid increases expressionISOFAM133B (Homo sapiens)6480464Lactic Acid results in increased expression of FAM133B mRNACTDPMID:30851411
Fam133bRat2-methylcholine affects expressionISOFAM133B (Homo sapiens)6480464beta-methylcholine affects the expression of FAM133B mRNACTDPMID:21179406
Fam133bRat3-isobutyl-1-methyl-7H-xanthine multiple interactionsISOFAM133B (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of FAM133B mRNACTDPMID:28628672
Fam133bRat4,4'-sulfonyldiphenol multiple interactionsISOFAM133B (Homo sapiens)6480464[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of FAM133B mRNACTDPMID:28628672
Fam133bRatacrolein multiple interactionsISOFAM133B (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of FAM133B mRNA more ...CTDPMID:32699268 and PMID:32845096
Fam133bRataflatoxin B1 increases expressionISOFam133b (Mus musculus)6480464Aflatoxin B1 results in increased expression of FAM133B mRNACTDPMID:19770486
Fam133bRataflatoxin B1 decreases methylationISOFAM133B (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of FAM133B geneCTDPMID:27153756
Fam133bRataldrin decreases expressionISOFam133b (Mus musculus)6480464Aldrin results in decreased expression of FAM133B mRNACTDPMID:18579281
Fam133bRatalpha-pinene multiple interactionsISOFAM133B (Homo sapiens)6480464[Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone] results in increased oxidation of FAM133B mRNA and [Air Pollutants results in increased abundance of [Acrolein co-treated with methacrylaldehyde co-treated with alpha-pinene co-treated with Ozone]] which results in increased oxidation of FAM133B mRNACTDPMID:32699268
Fam133bRataristolochic acid A decreases expressionISOFAM133B (Homo sapiens)6480464aristolochic acid I results in decreased expression of FAM133B mRNACTDPMID:33212167
Fam133bRatarsane affects methylationISOFAM133B (Homo sapiens)6480464Arsenic affects the methylation of FAM133B geneCTDPMID:25304211
Fam133bRatarsenic atom affects methylationISOFAM133B (Homo sapiens)6480464Arsenic affects the methylation of FAM133B geneCTDPMID:25304211
Fam133bRatbenzo[a]pyrene multiple interactionsISOFam133b (Mus musculus)6480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of FAM133B mRNACTDPMID:27858113
Fam133bRatbenzo[a]pyrene diol epoxide I increases expressionISOFAM133B (Homo sapiens)64804647 more ...CTDPMID:26238291
Fam133bRatbenzo[b]fluoranthene decreases expressionISOFam133b (Mus musculus)6480464benzo(b)fluoranthene results in decreased expression of FAM133B mRNACTDPMID:26377693
Fam133bRatbenzo[b]fluoranthene multiple interactionsISOFam133b (Mus musculus)6480464[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of FAM133B mRNACTDPMID:27858113
Fam133bRatbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of FAM133B mRNACTDPMID:25181051

1 to 20 of 50 rows

#
Reference Title
Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
PMID:22681889  



Fam133b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,544,458 - 31,571,056 (-)NCBIGRCr8
mRatBN7.2430,589,646 - 30,616,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,589,635 - 30,616,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,562,476 - 35,588,799 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,488,560 - 31,514,883 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,884,597 - 29,910,919 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,728,883 - 27,755,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,730,051 - 27,755,103 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,632,125 - 27,658,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4427,305,922 - 27,332,221 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1427,332,822 - 27,349,419 (-)NCBI
Celera426,014,093 - 26,040,392 (-)NCBICelera
Cytogenetic Map4q13NCBI
FAM133B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38792,560,758 - 92,590,390 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl792,560,758 - 92,590,393 (-)EnsemblGRCh38hg38GRCh38
GRCh37792,190,072 - 92,219,704 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36792,028,008 - 92,057,642 (-)NCBINCBI36Build 36hg18NCBI36
Celera786,894,604 - 86,924,236 (-)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef786,799,447 - 86,829,074 (-)NCBIHuRef
CHM1_1792,120,110 - 92,149,746 (-)NCBICHM1_1
T2T-CHM13v2.0793,802,706 - 93,832,343 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2791,519,294 - 91,548,926 (-)NCBI
Fam133b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3953,593,833 - 3,620,548 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl53,593,833 - 3,620,238 (+)EnsemblGRCm39 Ensembl
GRCm3853,543,833 - 3,570,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl53,543,833 - 3,570,238 (+)EnsemblGRCm38mm10GRCm38
MGSCv3753,543,833 - 3,570,548 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3653,549,850 - 3,575,817 (+)NCBIMGSCv36mm8
Celera53,479,777 - 3,506,492 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.22NCBI
Fam133b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554329,484,972 - 9,502,485 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554329,484,967 - 9,502,484 (-)NCBIChiLan1.0ChiLan1.0
FAM133B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26110,446,977 - 110,476,694 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17158,711,686 - 158,741,352 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0784,559,264 - 84,589,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1798,154,953 - 98,184,213 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl798,156,201 - 98,184,114 (-)Ensemblpanpan1.1panPan2
FAM133B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11418,145,882 - 18,168,367 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl130,781,898 - 30,783,509 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1418,147,576 - 18,168,274 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1417,706,754 - 17,729,075 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01417,952,687 - 17,975,186 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1417,952,700 - 17,975,143 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11418,113,143 - 18,135,428 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01417,825,217 - 17,847,483 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01418,099,459 - 18,121,970 (-)NCBIUU_Cfam_GSD_1.0
Fam133b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511831,533,094 - 31,556,759 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368031,243,268 - 1,265,292 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368031,243,180 - 1,266,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM133B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl972,472,338 - 72,503,756 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1972,470,990 - 72,503,822 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2979,200,174 - 79,232,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM133B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,420,342 - 56,449,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604247,830,947 - 47,860,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam133b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624809597,656 - 640,691 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624809597,535 - 643,122 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Fam133b
26 total Variants

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:118
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000012253
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat

1 to 10 of 35 rows
RH140194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2430,590,044 - 30,590,246 (+)MAPPERmRatBN7.2
Rnor_6.0427,729,210 - 27,729,411NCBIRnor6.0
Rnor_5.0427,632,524 - 27,632,725UniSTSRnor5.0
RGSC_v3.4427,306,249 - 27,306,450UniSTSRGSC3.4
Celera426,014,420 - 26,014,621UniSTS
Cytogenetic Map4q13UniSTS
BE106498  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X10,005,318 - 10,005,468 (+)MAPPERmRatBN7.2
Rnor_6.0X10,932,293 - 10,932,442NCBIRnor6.0
Rnor_5.0X11,730,875 - 11,731,024UniSTSRnor5.0
RGSC_v3.4X22,085,321 - 22,085,470UniSTSRGSC3.4
CeleraX10,531,080 - 10,531,229UniSTS
RH 3.4 MapX31.2UniSTS
Cytogenetic MapXq13UniSTS
Cytogenetic Map4q13UniSTS
RH137530  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2430,590,668 - 30,590,876 (+)MAPPERmRatBN7.2
mRatBN7.2X10,004,854 - 10,005,062 (+)MAPPERmRatBN7.2
Rnor_6.0X10,931,828 - 10,932,035NCBIRnor6.0
Rnor_6.0427,729,834 - 27,730,041NCBIRnor6.0
Rnor_5.0427,633,148 - 27,633,355UniSTSRnor5.0
Rnor_5.0X11,730,410 - 11,730,617UniSTSRnor5.0
RGSC_v3.4X22,084,857 - 22,085,064UniSTSRGSC3.4
RGSC_v3.4427,306,873 - 27,307,080UniSTSRGSC3.4
Celera426,015,044 - 26,015,251UniSTS
CeleraX10,530,616 - 10,530,823UniSTS
Cytogenetic MapXq13UniSTS
Cytogenetic Map4q13UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000012253   ⟹   ENSRNOP00000012253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,589,718 - 30,616,016 (-)Ensembl
Rnor_6.0 Ensembl427,730,051 - 27,755,103 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097111   ⟹   ENSRNOP00000078153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,589,635 - 30,605,018 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111265   ⟹   ENSRNOP00000090523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,589,848 - 30,616,040 (-)Ensembl
RefSeq Acc Id: NM_001024799   ⟹   NP_001019970
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,570,780 (-)NCBI
mRatBN7.2430,589,718 - 30,616,046 (-)NCBI
Rnor_6.0427,728,883 - 27,755,182 (-)NCBI
Rnor_5.0427,632,125 - 27,658,802 (-)NCBI
RGSC_v3.4427,305,922 - 27,332,221 (-)RGD
Celera426,014,093 - 26,040,392 (-)RGD
Sequence:
RefSeq Acc Id: XM_039107763   ⟹   XP_038963691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,571,056 (-)NCBI
mRatBN7.2430,589,646 - 30,616,159 (-)NCBI
RefSeq Acc Id: XM_039107764   ⟹   XP_038963692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,646 - 30,616,183 (-)NCBI
RefSeq Acc Id: XM_039107765   ⟹   XP_038963693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,646 - 30,616,179 (-)NCBI
RefSeq Acc Id: XM_039107766   ⟹   XP_038963694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,718 - 30,616,291 (-)NCBI
RefSeq Acc Id: XM_039107767   ⟹   XP_038963695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,718 - 30,616,286 (-)NCBI
RefSeq Acc Id: XM_063286232   ⟹   XP_063142302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,570,623 (-)NCBI
RefSeq Acc Id: XM_063286233   ⟹   XP_063142303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,571,056 (-)NCBI
RefSeq Acc Id: XM_063286234   ⟹   XP_063142304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,571,056 (-)NCBI
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_001019970   ⟸   NM_001024799
- UniProtKB: Q505I5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012253   ⟸   ENSRNOT00000012253
RefSeq Acc Id: XP_038963692   ⟸   XM_039107764
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038963693   ⟸   XM_039107765
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038963691   ⟸   XM_039107763
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANF8 (UniProtKB/TrEMBL)

Name Modeler Protein Id AA Range Protein Structure
AF-Q505I5-F1-model_v2 AlphaFold Q505I5 1-245 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692851
Promoter ID:EPDNEW_R3375
Type:initiation region
Name:Fam133b_1
Description:family with sequence similarity 133, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0427,755,150 - 27,755,210EPDNEW


1 to 18 of 18 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-45760 BioCyc
Ensembl Genes ENSRNOG00000009163 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012253 ENTREZGENE
  ENSRNOT00000111265 ENTREZGENE
IMAGE_CLONE IMAGE:7320019 IMAGE-MGC_LOAD
InterPro Fam133 UniProtKB/Swiss-Prot
KEGG Report rno:362320 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105633 IMAGE-MGC_LOAD
NCBI Gene 362320 ENTREZGENE
PANTHER PROTEIN FAM133B UniProtKB/Swiss-Prot
  PTHR31911 UniProtKB/Swiss-Prot
PhenoGen Fam133b PhenoGen
RatGTEx ENSRNOG00000009163 RatGTEx
UniProt A0A8I5ZJP5_RAT UniProtKB/TrEMBL
  A0A8I6ANF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q616_RAT UniProtKB/TrEMBL
  A6K289 ENTREZGENE, UniProtKB/TrEMBL
  F133B_RAT UniProtKB/Swiss-Prot, ENTREZGENE
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Fam133b  family with sequence similarity 133, member B  RGD1306302  similar to RIKEN cDNA 5830415L20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306302  similar to RIKEN cDNA 5830415L20  RGD1306302_predicted  similar to RIKEN cDNA 5830415L20 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306302_predicted  similar to RIKEN cDNA 5830415L20 (predicted)  LOC362320_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362320_predicted  similar to RIKEN cDNA 5830415L20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL