Lmf2 (lipase maturation factor 2) - Rat Genome Database

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Gene: Lmf2 (lipase maturation factor 2) Rattus norvegicus
Analyze
Symbol: Lmf2
Name: lipase maturation factor 2
RGD ID: 1306274
Description: Predicted to be involved in protein maturation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human LMF2 (lipase maturation factor 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; coumarin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC315218; RGD1306274; similar to hypothetical protein BC002942; Tmem112b; transmembrane protein 112B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,297,971 - 122,302,423 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7122,297,973 - 122,302,423 (-)EnsemblGRCr8
mRatBN7.27120,418,343 - 120,422,825 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,418,345 - 120,422,823 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7122,169,034 - 122,173,490 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,395,189 - 124,399,644 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,357,860 - 124,362,311 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,322,018 - 130,326,470 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,322,020 - 130,326,470 (-)Ensemblrn6Rnor6.0
Rnor_5.07130,007,319 - 130,011,771 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47127,646,134 - 127,650,588 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7116,892,158 - 116,895,843 (-)NCBICelera
RGSC_v3.17127,680,363 - 127,684,818 (-)NCBI
Cytogenetic Map7q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
protein maturation  (IBA,IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888  


Genomics

Comparative Map Data
Lmf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,297,971 - 122,302,423 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7122,297,973 - 122,302,423 (-)EnsemblGRCr8
mRatBN7.27120,418,343 - 120,422,825 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,418,345 - 120,422,823 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7122,169,034 - 122,173,490 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,395,189 - 124,399,644 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,357,860 - 124,362,311 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,322,018 - 130,326,470 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,322,020 - 130,326,470 (-)Ensemblrn6Rnor6.0
Rnor_5.07130,007,319 - 130,011,771 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47127,646,134 - 127,650,588 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7116,892,158 - 116,895,843 (-)NCBICelera
RGSC_v3.17127,680,363 - 127,684,818 (-)NCBI
Cytogenetic Map7q34NCBI
LMF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,502,949 - 50,507,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,502,947 - 50,507,732 (-)Ensemblhg38GRCh38
GRCh372250,941,378 - 50,946,131 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,288,246 - 49,292,979 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2234,817,402 - 34,822,161 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,832,434 - 33,837,266 (-)NCBIHuRef
CHM1_12250,900,119 - 50,904,701 (-)NCBICHM1_1
T2T-CHM13v2.02251,013,236 - 51,018,273 (-)NCBIT2T-CHM13v2.0
Lmf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,235,203 - 89,239,860 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,235,207 - 89,239,862 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381589,351,004 - 89,355,694 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,351,004 - 89,355,659 (-)Ensemblmm10GRCm38
MGSCv371589,181,435 - 89,186,090 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361589,178,775 - 89,183,251 (-)NCBIMGSCv36mm8
Celera1591,480,143 - 91,484,798 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.84NCBI
Lmf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,487,917 - 33,492,033 (-)Ensembl
ChiLan1.0NW_00495541333,487,970 - 33,492,033 (-)NCBIChiLan1.0ChiLan1.0
LMF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,423,350 - 60,428,168 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12263,113,790 - 63,118,967 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,749,448 - 30,754,616 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,859,550 - 49,864,265 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,859,550 - 49,864,237 (-)EnsemblpanPan2panpan1.1
LMF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,802,110 - 16,806,471 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,801,342 - 16,806,020 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1016,779,795 - 16,784,171 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01017,528,304 - 17,531,440 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11017,252,845 - 17,257,220 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,575,862 - 17,580,230 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,708,089 - 17,712,466 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lmf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945332,772 - 336,927 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629332,768 - 337,062 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936629332,772 - 336,927 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5233,401 - 238,266 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.15233,601 - 238,266 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25110,542,033 - 110,546,699 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,973,979 - 32,978,433 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1932,974,420 - 32,978,374 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604592,362,295 - 92,366,843 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752269,147 - 273,054 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624752269,054 - 273,316 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lmf2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11258,649,680 - 258,654,179 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lmf2
44 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:68
Interacting mature miRNAs:73
Transcripts:ENSRNOT00000049538
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
1300112Bp183Blood pressure QTL 1833.51arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)7119280025135560836Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7118556868125929417Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat

Markers in Region
RH133077  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.27120,418,599 - 120,418,798 (+)MAPPERmRatBN7.2
Rnor_6.07130,322,275 - 130,322,473NCBIRnor6.0
Rnor_5.07130,007,576 - 130,007,774UniSTSRnor5.0
RGSC_v3.47127,646,391 - 127,646,589UniSTSRGSC3.4
Celera7116,892,413 - 116,892,611UniSTS
RH 3.4 Map7958.3UniSTS
Cytogenetic Map7q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000049538   ⟹   ENSRNOP00000051363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7122,297,973 - 122,302,423 (-)Ensembl
mRatBN7.2 Ensembl7120,418,345 - 120,422,823 (-)Ensembl
Rnor_6.0 Ensembl7130,322,020 - 130,326,470 (-)Ensembl
RefSeq Acc Id: NM_001079939   ⟹   NP_001073408
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87122,297,971 - 122,302,423 (-)NCBI
mRatBN7.27120,418,343 - 120,422,795 (-)NCBI
Rnor_6.07130,322,018 - 130,326,470 (-)NCBI
Rnor_5.07130,007,319 - 130,011,771 (-)NCBI
RGSC_v3.47127,646,134 - 127,650,588 (-)RGD
Celera7116,892,158 - 116,895,843 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001073408 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A1L1J9 (Get FASTA)   NCBI Sequence Viewer  
  AAH88333 (Get FASTA)   NCBI Sequence Viewer  
  AAI29103 (Get FASTA)   NCBI Sequence Viewer  
  EDL76559 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000101764
RefSeq Acc Id: NP_001073408   ⟸   NM_001079939
- UniProtKB: Q5I0G9 (UniProtKB/Swiss-Prot),   A1L1J9 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000051363   ⟸   ENSRNOT00000049538

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A1L1J9-F1-model_v2 AlphaFold A1L1J9 1-702 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695584
Promoter ID:EPDNEW_R6109
Type:multiple initiation site
Name:Lmf2_1
Description:lipase maturation factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07130,326,338 - 130,326,398EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306274 AgrOrtholog
BioCyc Gene G2FUF-32441 BioCyc
Ensembl Genes ENSRNOG00000030633 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000049538 ENTREZGENE
IMAGE_CLONE IMAGE:7099869 IMAGE-MGC_LOAD
  IMAGE:7365896 IMAGE-MGC_LOAD
InterPro LMF UniProtKB/Swiss-Prot
KEGG Report rno:315218 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109593 IMAGE-MGC_LOAD
  MGC:156704 IMAGE-MGC_LOAD
NCBI Gene 315218 ENTREZGENE
PANTHER LIPASE MATURATION FACTOR 2 UniProtKB/Swiss-Prot
  PTHR14463 UniProtKB/Swiss-Prot
Pfam LMF1 UniProtKB/Swiss-Prot
  LMF1_C UniProtKB/Swiss-Prot
PhenoGen Lmf2 PhenoGen
RatGTEx ENSRNOG00000030633 RatGTEx
UniProt A1L1J9 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5I0G9 ENTREZGENE
UniProt Secondary Q5I0G9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-05-02 Lmf2  lipase maturation factor 2  Tmem112b  transmembrane protein 112B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Tmem112b  transmembrane protein 112B  RGD1306274  similar to hypothetical protein BC002942  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306274  similar to hypothetical protein BC002942  RGD1306274_predicted  similar to hypothetical protein BC002942 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306274_predicted  similar to hypothetical protein BC002942 (predicted)  LOC315218_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC315218_predicted  similar to hypothetical protein BC002942 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL