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Gene: Pphln1 (periphilin 1) Rattus norvegicus

Analyze

Symbol:

Pphln1

Name:

periphilin 1

RGD ID:

1306207

Description:

Predicted to be involved in constitutive heterochromatin formation and protein localization to heterochromatin. Predicted to be active in nucleoplasm. Orthologous to human PPHLN1 (periphilin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC366975; periphilin-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PPHLN1 (periphilin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pphln1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pphln1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PPHLN1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PPHLN1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pphln1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PPHLN1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PPHLN1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pphln1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pphln1 (periphilin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PPHLN1 (periphilin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PPHLN1 (periphilin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Pphln1 (periphilin 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pphln1 (periphilin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pphln1 (periphilin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y57G11C.9	Alliance	DIOPT (InParanoid\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	Y57G11C.9	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	pphln1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	126,418,042 - 126,509,430 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	126,417,555 - 126,509,430 (+)	Ensembl				GRCr8
mRatBN7.2	7	124,538,594 - 124,629,985 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	124,538,627 - 124,629,985 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	126,314,196 - 126,404,688 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	128,540,067 - 128,630,559 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	128,461,614 - 128,552,508 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	134,602,109 - 134,693,807 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	134,603,121 - 134,695,864 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	134,269,149 - 134,361,038 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	131,866,854 - 131,958,060 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	120,936,842 - 121,027,416 (+)	NCBI		Celera
RGSC_v3.1	7	131,951,572 - 132,034,500 (+)	NCBI
Cytogenetic Map	7	q35	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Bufotalin (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlormequat chloride (EXP)

chloroprene (ISO)

chlorpyrifos (ISO)

coumarin (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diethylstilbestrol (ISO)

disodium selenite (ISO)

diuron (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

ivermectin (ISO)

methapyrilene (EXP,ISO)

nickel atom (ISO)

nitrates (ISO)

Nivalenol (ISO)

ozone (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

tamoxifen (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

constitutive heterochromatin formation (ISO)

negative regulation of DNA-templated transcription (IEA)

negative regulation of gene expression, epigenetic (IBA,ISO)

negative regulation of type I interferon production (ISO)

protein localization to heterochromatin (IBA,ISO)

transposable element silencing by heterochromatin formation (ISO)

Cellular Component

chromatin (ISO)

heterochromatin (ISO)

HUSH complex (ISO)

HUSH2 complex (ISO)

nucleoplasm (IBA,ISO)

nucleus (ISO)

Molecular Function

mRNA binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:19730898	PMID:22658674	PMID:22681889	PMID:26022416	PMID:28581500

Genomics

Comparative Map Data

Pphln1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	126,418,042 - 126,509,430 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	126,417,555 - 126,509,430 (+)	Ensembl				GRCr8
mRatBN7.2	7	124,538,594 - 124,629,985 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	124,538,627 - 124,629,985 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	126,314,196 - 126,404,688 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	128,540,067 - 128,630,559 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	128,461,614 - 128,552,508 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	7	134,602,109 - 134,693,807 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	134,603,121 - 134,695,864 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	134,269,149 - 134,361,038 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	131,866,854 - 131,958,060 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	120,936,842 - 121,027,416 (+)	NCBI		Celera
RGSC_v3.1	7	131,951,572 - 132,034,500 (+)	NCBI
Cytogenetic Map	7	q35	NCBI

PPHLN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	42,326,167 - 42,448,621 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	42,238,418 - 42,459,715 (+)	Ensembl			hg38	GRCh38
GRCh37	12	42,719,969 - 42,842,423 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	41,006,214 - 41,128,689 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	41,006,213 - 41,122,031	NCBI
Celera	12	41,521,768 - 41,644,263 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI
HuRef	12	39,746,824 - 39,869,220 (+)	NCBI		HuRef
CHM1_1	12	42,686,556 - 42,809,069 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	42,284,102 - 42,406,479 (+)	NCBI		T2T-CHM13v2.0

Pphln1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	93,296,243 - 93,389,794 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	93,296,231 - 93,389,391 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	93,398,345 - 93,491,913 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	93,398,350 - 93,491,510 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	93,228,781 - 93,322,344 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	93,226,538 - 93,319,690 (+)	NCBI		MGSCv36	mm8
Celera	15	95,543,086 - 95,639,831 (+)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	47.55	NCBI

Pphln1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	1,806,658 - 1,892,056 (+)	Ensembl
ChiLan1.0	NW_004955500	1,744,968 - 1,892,056 (+)	NCBI	ChiLan1.0	ChiLan1.0

PPHLN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	51,713,628 - 51,834,368 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	51,710,387 - 51,831,128 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	46,271,425 - 46,392,128 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	47,136,806 - 47,256,615 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	47,125,110 - 47,256,615 (-)	Ensembl			panPan2	panpan1.1

PPHLN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	11,445,893 - 11,590,168 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	11,443,394 - 11,590,107 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	34,713,227 - 34,859,870 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	11,639,299 - 11,786,475 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	11,642,234 - 11,786,849 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl	17	28,155,583 - 28,157,366 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	11,452,912 - 11,604,788 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	11,481,989 - 11,628,875 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	34,959,063 - 35,106,374 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pphln1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	72,006,180 - 72,162,973 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	1,057,128 - 1,158,650 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	1,001,733 - 1,158,647 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPHLN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	73,498,730 - 73,697,953 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	73,556,205 - 73,696,403 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	76,314,125 - 76,434,664 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPHLN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	38,563,818 - 38,684,210 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	38,563,866 - 38,684,030 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	207,876,143 - 207,999,250 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pphln1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624816	10,190,505 - 10,229,846 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pphln1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	266,313,446 - 266,402,775 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pphln1
740 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	284
Count of miRNA genes:	173
Interacting mature miRNAs:	221
Transcripts:	ENSRNOT00000055688
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631529	Tls2	T-lymphoma susceptibility QTL 2	0	0.001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	7	82111382	132099989	Rat
1354582	Stl11	Serum triglyceride level QTL 11	3.42		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	7	121393075	137014596	Rat
731176	Glom5	Glomerulus QTL 5	2.5	0.0035	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	7	98549867	137014596	Rat
1300112	Bp183	Blood pressure QTL 183	3.51		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	7	119280025	135560836	Rat
1331731	Bp216	Blood pressure QTL 216	2.851		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	104186212	135371468	Rat
631687	Hcas1	Hepatocarcinoma susceptibility QTL 1	3.9	0.001	liver integrity trait (VT:0010547)	liver tumorous lesion volume to total liver volume ratio (CMO:0001082)	7	93302009	131686183	Rat
1331748	Bp215	Blood pressure QTL 215	4.043		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	110725024	135371468	Rat
61428	Scl3	Serum cholesterol level QTL 3	3.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	7	100548246	137014596	Rat
61397	Bw17	Body weight QTL 17	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	7	95485047	137014596	Rat
1331746	Kidm9	Kidney mass QTL 9	3.934		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	7	82111245	134948181	Rat
1358914	Bp266	Blood pressure QTL 266			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	115313999	136544683	Rat
2299163	Iddm34	Insulin dependent diabetes mellitus QTL 34	2.71		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	7	116269196	132020414	Rat
631504	Cm27	Cardiac mass QTL 27	3.45		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	7	46307490	127866166	Rat
634322	Bw12	Body weight QTL 12	0		body mass (VT:0001259)	body weight (CMO:0000012)	7	85043242	130043242	Rat
70173	Niddm19	Non-insulin dependent diabetes mellitus QTL 19	4.33	0.00005	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	7	85497398	130497398	Rat
1549899	Stresp8	Stress response QTL 8	4.37	0.0008	stress-related behavior trait (VT:0010451)	defensive burying duration (CMO:0001961)	7	92362341	137014596	Rat
2317052	Aia17	Adjuvant induced arthritis QTL 17	2.13		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	7	83626689	128626689	Rat
1358891	Bp265	Blood pressure QTL 265	2.21		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	7	71827901	136544683	Rat

Markers in Region

RH131400

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,629,718 - 124,629,924 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,693,541 - 134,693,746	NCBI	Rnor6.0
Rnor_5.0	7	134,360,772 - 134,360,977	UniSTS	Rnor5.0
RGSC_v3.4	7	131,957,797 - 131,958,002	UniSTS	RGSC3.4
Celera	7	121,027,153 - 121,027,358	UniSTS
RH 3.4 Map	7	1021.1	UniSTS
Cytogenetic Map	7	q35	UniSTS

BF396377

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	124,581,871 - 124,582,049 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	134,645,544 - 134,645,721	NCBI	Rnor6.0
Rnor_5.0	7	134,312,584 - 134,312,761	UniSTS	Rnor5.0
RGSC_v3.4	7	131,909,276 - 131,909,453	UniSTS	RGSC3.4
Celera	7	120,979,284 - 120,979,461	UniSTS
RH 3.4 Map	7	1021.1	UniSTS
Cytogenetic Map	7	q35	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242235	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039079705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010053024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY724510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000055688 ⟹ ENSRNOP00000052548

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	126,418,100 - 126,509,427 (+)	Ensembl
mRatBN7.2 Ensembl	7	124,539,447 - 124,629,982 (+)	Ensembl
Rnor_6.0 Ensembl	7	134,603,122 - 134,693,804 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090908 ⟹ ENSRNOP00000072231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	126,418,100 - 126,509,430 (+)	Ensembl
mRatBN7.2 Ensembl	7	124,539,447 - 124,629,985 (+)	Ensembl
Rnor_6.0 Ensembl	7	134,603,121 - 134,695,864 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098702 ⟹ ENSRNOP00000087331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	126,426,368 - 126,509,428 (+)	Ensembl
mRatBN7.2 Ensembl	7	124,538,627 - 124,629,982 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102144 ⟹ ENSRNOP00000097952

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	126,418,100 - 126,509,427 (+)	Ensembl
mRatBN7.2 Ensembl	7	124,539,447 - 124,629,982 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000115812 ⟹ ENSRNOP00000087420

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	7	126,417,555 - 126,509,428 (+)	Ensembl
mRatBN7.2 Ensembl	7	124,539,447 - 124,629,982 (+)	Ensembl

RefSeq Acc Id:

NM_001108992 ⟹ NP_001102462

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,895 - 126,509,427 (+)	NCBI
mRatBN7.2	7	124,539,447 - 124,629,982 (+)	NCBI
Rnor_6.0	7	134,603,122 - 134,693,804 (+)	NCBI
Rnor_5.0	7	134,269,149 - 134,361,038 (+)	NCBI
RGSC_v3.4	7	131,866,854 - 131,958,060 (+)	RGD
Celera	7	120,936,842 - 121,027,416 (+)	RGD

Sequence:

show sequence

GCACATACAGACCAGGCCTGTAACTACTCCCTGGGAACCTGCGTGTCAGCAGCCCGGAGCCCAG
AGCCTGTCGTGGAGCCTGCACAATCAATCCTGACTGAAGCGGAGGGCCGAAGTGCAATCCACCC
AGGGCGCAGCTGAGTTTTGAGAGGCATTAATTCCTTGGCGTCCACCAAGGGACCACTGGGACTA
ATTCTCATGGCAAACTTGTGGCCAGCCCAAACTACCAAGCTTCACATTCCGGTTGTGCTTGGTT
ATCGCCCAAGATTGGCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGCTATGACTACGAGCG
ACTTCCGAGAGAACGAGTGCCTCCCCGGAGCCATCCCAGTGATGGCTACCATAGAGTAGTTAAT
GTTGTGCCAAAGAGACCACCTCTCCTAGACAAGAGACCACCTCTCCTAGACAAGAGACCACCTC
TGCTAGCCAGACCCGATGAAGGCTACAATAGATATTACACTCATGTTGATTGCCGAGTATGTAA
CGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGCCCATCTCACAGAGGAGATGAATTTGGC
TACAGATGGACAAGAGATGATCATTCCACAAGCCGGCAGTCTGACTACAGGGATATGAGAGATG
GCTTTAGAAGAAAGAGTTTCTACTCTTCCCATTATTCAAGAGACCGCTCTCCCCATAAAAGGGA
CGCTCCGTTCTTCAGAGAATCACCTGTAGGCCGGAAGGACTCCCCACACAGCAGGTCCGGCTCC
AGTGTCAGCAGTAGAAGCTATTCTCCAGAACGAAGCAGGACACACACCTTCCATCAGTCTCAGC
ACAGAAAATCCTCGCGTGTCGGTGCTTCCTACAAACGGCAGAATGAAGCCACTCGAGGAAGAGG
TAAAGAGAGATCCATCCAGTCTTTGAAAACTTCAAGAGACACTTCACCCTCAAGTTCGTCAGCA
GTTTCTTCATCCAAGGCGTTAGACAAGCCCAGCAGGCTCACTGAGAAGGAACTCGCTGAGGCTG
AGAGCAAGTGGGCTGCCGACACACTAGAGAGATCCGATGAAAACAACCTGGGTGAAATTTCTGA
GTTTGAGGCGGGATCCGCGGCACCCTTATTTATTGACCAGACAGAGGAACCCGAGTCAAACACA
ACGGACGGCACAGAAATGTATGAAGACAGCCAGCTCAGCAGCCGCTCTAAAGCCATCGCATCAA
AAACCAAAGAGATCGAGCAGGTTTACCGACAAGACTGTGAGACTTTCGGGATGGTGGTGAAAAT
GCTGATTGAAAAAGATCCCTCGTTAGAAAAGTCTATCCAGTTTGCACTGAGGCAGAACTTACAT
GAAATAGGTGAGCGCTGTGTTGAAGAACTCAAGCATTTCATTACCGAGTACGATAATTCTACTC
AAGATTTTGGAGACCCTTTTTAGAAGAAGTAGTGCCCAGGTCAAGAAAATTTTTTTAGATTTTT
TTTTTCTCCTTGGATTGTGTAAATCCTTACTATTTTGTGATGAAGAGAAATACTTTATGCTAGC
TGACCACATTTCTAGTATTAAATAAACATCTACAATAGCTTTTAAAGTATCTTAATTAGAATAT
TTCCCCTATGTGTAGAATATTCTTCTCCATCTTCAAATACTTCCTCCCTCCAAAATAATGTTCA
GTTATTTTAATGTTCAAAAAAGCAGTTCTGGAGAGCAGCTTTCTGAGTTCAACTTGTGTTCCAC
AGTCTTCCATGATGTTTCAGGATGATCCTCTTGTGTCCCGGGTAAAGGCCGACTTTGTATGTTG
GTTTCTGTGCAGAGAGCTGAGTACTGTTGGGACTTCGGTATTGTCACTCTAATTTCTCAGCAGC
TTCTTAGTTGTAAACATTCTCCTCCATCACCTTCTGATTGGTCTAATAAAGCCTGTAGGTCGGG
AGAGGAAAGCAGGGCATCTGGGCAGAGAGAGGAACTATGGGAAGAATTTGTGTAGGGAATTTAC
CACCCAGACACAAAGGAAGTCTGGCTTCAGGGACTGAATGAGAGATAACAGACCACGTGACAAA
CGTGAACCAAAATAAATTAAGTTATAGGAACTAGTTGAGAACAAGCCTAAGCTATAAGGCCTAG
GCATTCATAAATAATAAAAAAAAGTCTGTGTCCTTGTTGGGCTGGTGGATCCAAACAGTCTGAT
AGTGAGCGTTTAGTCTCAGCTGTTTAATTTGTAGTTAAGATCATTCCAGTTTGCATATAATAGT
GGCACTGTTAGCATTTTGAGTTGGTGATGTCAAAATATGCTATCTTAATGGGTCAGAACCTTGC
TATTGTATATTTGCTTTGATATTTCTTATTCAATATAGAAAAAAGCACTTGAAAATCTGTAAGG
TTGTAAGATTTTAGAACAAAATCTTTCACTCAAGTCAGTGAACTTAGTTTATCTCTTCTACAAA
GTGCTCTTGGGGCTCCTAACTGTTCTTTCTATAGACTAACAGGAGGGGTCATCTGAGATACGAG
ATAAATTGAAGTTTGGATGTCTCAGAAACCCTTCTGATGGCTATAGTAAAGGTCAGAATATCCA
GAGCACTTAAGTTTTGTTTGAGGCCCACACTGTATCAAAAGGGGACCTGACAAGGCACTCGTGC
TTGGGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGTAGGTTTAGAGGGGAC
CTGACAAGGCACTTGTGCTTGGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCT
GGAGGGTTAGAGGGTCTCTTCCTTCATAAGTGACCTCAGGAAAATGAAGCAGAAAACAGTGAGG
CCAGCACAGCCACCGTAAATAAGTAAAGAGACAATTAGGACTCTCGCTCACTTCCTGGTCCCTT
CCAGCAGTTCATTGAGGCAAAATACATAATTCATGACATTAGGCACCTTAAAAATCACTGTTTT
AATCACTGCCTGATCCTGTTATCTACTATTTTTTCAAGTTAGGGCCATACAGTATAGCCCTAGC
TAGCCTGAATATCTCTGTAGACCAGGCTAGGCCTTGAACTCACAGAAATCTTCCCACCTCTACC
TCTTGCAAGCTGGCATTAAACCCTGTGTCACCATGCTTAGGATCCTTTTGGTTTGGTTTGATTT
CATTTTCATTCAGTTCTGTCCTTTACACTCTTTAATTTGAGACAGGGTCTTACTGTGTATTCTA
GGCTGGCTTCAAACTTTCCGCTTTGGCCTTTTTAACTCTTGGGATTCCTGCCTCAGCTTTCCTG
AGTTAGAGGTGTGAACCCCAACGCTTGCCATTACGTTCCGTGGCCTCTATGATCCTGTCTGCAG
AGATACTCCTAAATCGCATACAGATGATATTTAAACTAGAAATGGCAGTATGAGTAATTTTAAT
GAGCCCTGCAATGGGAGTGCAAAGATATTATTATGCCATTTTGAAAATTAAAAACTAATTGATG
ACATTTTAAGTTCCTTAAGTGAGAACACTGGAGTTATTCCAGGCATTGCGATTCTATGCACACC
TCTTCTAAGCACGTGTGGTCAATGCTGGTCGCTTCAGCAAGACCGCATGTCATTTTTCCTTTTT
TTTTTTTTTTTTTTCTTCCACCAATTCTCAGCTCTTCAAATCAAGTTGTTAACAAACATAACTA
TAAAATTTGAGAAGCTACCAGGGCAAATAAATTGTTCACTTGGTAGAAATCCATTTAAAAAAGA
GTCTTACTAGTAGATTTATTTAAATGAAGGTCCAACCAGTGACCTTCCCTCAAATCATATTCAG
CATTTGAAGCTATTTCCAGCTTGCCGTCAGCGATGTTCTGCTAGGCTTGTCAGTGTTAAATGTT
TTGTTTACCATTTTTTAAAAAATGCTTCAACATCTAAAATTCATGTGTACTAGAATATGTATTT
TATAAATGTTTTTGATTCTAAGAGATGTGTTTGTAAATTATCCACTGTTTTTCAGTATACTGAA
TTCGTGTGTTATGTTTTCATTGTCTCACCATAAGGCCTTGATGATCAATATGGGGGAAGCAGAC
ACTGTAAAATGCAAAATAAAGCGCCCAGTACTAAG

hide sequence

RefSeq Acc Id:

XM_006242230 ⟹ XP_006242292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,068 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,663 - 124,629,985 (+)	NCBI
Rnor_6.0	7	134,602,109 - 134,693,807 (+)	NCBI
Rnor_5.0	7	134,269,149 - 134,361,038 (+)	NCBI

Sequence:

show sequence

CGCAGTGGCCGAGCAGGCTGGATGCGAGCCCGCGGCGGCTCCACCCCCAGCTGCCTTCCGCGGC
GCGCAAGAGCGCGGGCGTCCGCGACCGCAGCGCGGTGCAGCGTTTCTTCCGTATCCCCGAAACC
CGGGCGCTCCCGGGCCGGAGGCTGGCGCGCCGGGCGACGTCACCACGCGCGCCGGAAGTGCCTT
TGGGGCGAGCGGACGTCTGGCTTCGCGGGTTTCACCGGCGGCGGCGGCGGCGGCGGCGGCGCGG
CAGTGGAACTGGCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGCTATGACTACGAGCGACT
TCCGAGAGAACGAGTGCCTCCCCGGAGCCATCCCAGTGATGGCTACCATAGAGTAGTTAATGTT
GTGCCAAAGAGACCACCTCTCCTAGACAAGAGACCACCTCTCCTAGACAAGAGACCACCTCTGC
TAGCCAGACCCGATGAAGGCTACAATAGATATTACACTCATGTTGATTGCCGAGTATGTAACGA
GGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGCCCATCTCACAGAGGAGATGAATTTGGCTAC
AGATGGACAAGAGATGATCATTCCACAAGCCGGCAGTCTGACTACAGGGATATGAGAGATGGCT
TTAGAAGAAAGAGTTTCTACTCTTCCCATTATTCAAGAGACCGCTCTCCCCATAAAAGGGACGC
TCCGTTCTTCAGAGAATCACCTGTAGGCCGGAAGGACTCCCCACACAGCAGGTCCGGCTCCAGT
GTCAGCAGTAGAAGCTATTCTCCAGAACGAAGCAGGACACACACCTTCCATCAGTCTCAGCACA
GAAAATCCTCGCGTGTCGGTGCTTCCTACAAACGGCAGAATGAAGCCACTCGAGGAAGAGGTAA
AGAGAGATCCATCCAGTCTTTGAAAACTTCAAGAGACACTTCACCCTCAAGTTCGTCAGCAGTT
TCTTCATCCAAGGCGTTAGACAAGCCCAGCAGGCTCACTGAGAAGGAACTCGCTGAGGCTGAGA
GCAAGTGGGCTGCCGACACACTAGAGAGATCCGATGAAAACAACCTGGGTGAAATTTCTGAGTT
TGAGGCGGGATCCGCGGCACCCTTATTTATTGACCAGACAGAGGAACCCGAGTCAAACACAACG
GACGGCACAGAAATGTATGAAGACAGCCAGCTCAGCAGCCGCTCTAAAGCCATCGCATCAAAAA
CCAAAGAGATCGAGCAGGTTTACCGACAAGACTGTGAGACTTTCGGGATGGTGGTGAAAATGCT
GATTGAAAAAGATCCCTCGTTAGAAAAGTCTATCCAGTTTGCACTGAGGCAGAACTTACATGAA
ATAGGTGAGCGCTGTGTTGAAGAACTCAAGCATTTCATTACCGAGTACGATAATTCTACTCAAG
ATTTTGGAGACCCTTTTTAGAAGAAGTAGTGCCCAGGTCAAGAAAATTTTTTTAGATTTTTTTT
TTCTCCTTGGATTGTGTAAATCCTTACTATTTTGTGATGAAGAGAAATACTTTATGCTAGCTGA
CCACATTTCTAGTATTAAATAAACATCTACAATAGCTTTTAAAGTATCTTAATTAGAATATTTC
CCCTATGTGTAGAATATTCTTCTCCATCTTCAAATACTTCCTCCCTCCAAAATAATGTTCAGTT
ATTTTAATGTTCAAAAAAGCAGTTCTGGAGAGCAGCTTTCTGAGTTCAACTTGTGTTCCACAGT
CTTCCATGATGTTTCAGGATGATCCTCTTGTGTCCCGGGTAAAGGCCGACTTTGTATGTTGGTT
TCTGTGCAGAGAGCTGAGTACTGTTGGGACTTCGGTATTGTCACTCTAATTTCTCAGCAGCTTC
TTAGTTGTAAACATTCTCCTCCATCACCTTCTGATTGGTCTAATAAAGCCTGTAGGTCGGGAGA
GGAAAGCAGGGCATCTGGGCAGAGAGAGGAACTATGGGAAGAATTTGTGTAGGGAATTTACCAC
CCAGACACAAAGGAAGTCTGGCTTCAGGGACTGAATGAGAGATAACAGACCACGTGACAAACGT
GAACCAAAATAAATTAAGTTATAGGAACTAGTTGAGAACAAGCCTAAGCTATAAGGCCTAGGCA
TTCATAAATAATAAAAAAAAGTCTGTGTCCTTGTTGGGCTGGTGGATCCAAACAGTCTGATAGT
GAGCGTTTAGTCTCAGCTGTTTAATTTGTAGTTAAGATCATTCCAGTTTGCATATAATAGTGGC
ACTGTTAGCATTTTGAGTTGGTGATGTCAAAATATGCTATCTTAATGGGTCAGAACCTTGCTAT
TGTATATTTGCTTTGATATTTCTTATTCAATATAGAAAAAAGCACTTGAAAATCTGTAAGGTTG
TAAGATTTTAGAACAAAATCTTTCACTCAAGTCAGTGAACTTAGTTTATCTCTTCTACAAAGTG
CTCTTGGGGCTCCTAACTGTTCTTTCTATAGACTAACAGGAGGGGTCATCTGAGATACGAGATA
AATTGAAGTTTGGATGTCTCAGAAACCCTTCTGATGGCTATAGTAAAGGTCAGAATATCCAGAG
CACTTAAGTTTTGTTTGAGGCCCACACTGTATCAAAAGGGGACCTGACAAGGCACTCGTGCTTG
GGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGTAGGTTTAGAGGGGACCTG
ACAAGGCACTTGTGCTTGGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGGA
GGGTTAGAGGGTCTCTTCCTTCATAAGTGACCTCAGGAAAATGAAGCAGAAAACAGTGAGGCCA
GCACAGCCACCGTAAATAAGTAAAGAGACAATTAGGACTCTCGCTCACTTCCTGGTCCCTTCCA
GCAGTTCATTGAGGCAAAATACATAATTCATGACATTAGGCACCTTAAAAATCACTGTTTTAAT
CACTGCCTGATCCTGTTATCTACTATTTTTTCAAGTTAGGGCCATACAGTATAGCCCTAGCTAG
CCTGAATATCTCTGTAGACCAGGCTAGGCCTTGAACTCACAGAAATCTTCCCACCTCTACCTCT
TGCAAGCTGGCATTAAACCCTGTGTCACCATGCTTAGGATCCTTTTGGTTTGGTTTGATTTCAT
TTTCATTCAGTTCTGTCCTTTACACTCTTTAATTTGAGACAGGGTCTTACTGTGTATTCTAGGC
TGGCTTCAAACTTTCCGCTTTGGCCTTTTTAACTCTTGGGATTCCTGCCTCAGCTTTCCTGAGT
TAGAGGTGTGAACCCCAACGCTTGCCATTACGTTCCGTGGCCTCTATGATCCTGTCTGCAGAGA
TACTCCTAAATCGCATACAGATGATATTTAAACTAGAAATGGCAGTATGAGTAATTTTAATGAG
CCCTGCAATGGGAGTGCAAAGATATTATTATGCCATTTTGAAAATTAAAAACTAATTGATGACA
TTTTAAGTTCCTTAAGTGAGAACACTGGAGTTATTCCAGGCATTGCGATTCTATGCACACCTCT
TCTAAGCACGTGTGGTCAATGCTGGTCGCTTCAGCAAGACCGCATGTCATTTTTCCTTTTTTTT
TTTTTTTTTTTCTTCCACCAATTCTCAGCTCTTCAAATCAAGTTGTTAACAAACATAACTATAA
AATTTGAGAAGCTACCAGGGCAAATAAATTGTTCACTTGGTAGAAATCCATTTAAAAAAGAGTC
TTACTAGTAGATTTATTTAAATGAAGGTCCAACCAGTGACCTTCCCTCAAATCATATTCAGCAT
TTGAAGCTATTTCCAGCTTGCCGTCAGCGATGTTCTGCTAGGCTTGTCAGTGTTAAATGTTTTG
TTTACCATTTTTTAAAAAATGCTTCAACATCTAAAATTCATGTGTACTAGAATATGTATTTTAT
AAATGTTTTTGATTCTAAGAGATGTGTTTGTAAATTATCCACTGTTTTTCAGTATACTGAATTC
GTGTGTTATGTTTTCATTGTCTCACCATAAGGCCTTGATGATCAATATGGGGGAAGCAGACACT
GTAAAATGCAAAATAAAGCGCCCAGTACTAAGTAA

hide sequence

RefSeq Acc Id:

XM_006242233 ⟹ XP_006242295

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,080 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,661 - 124,629,985 (+)	NCBI
Rnor_6.0	7	134,602,109 - 134,693,807 (+)	NCBI
Rnor_5.0	7	134,269,149 - 134,361,038 (+)	NCBI

Sequence:

show sequence

CGCAGTGGCCGAGCAGGCTGGATGCGAGCCCGCGGCGGCTCCACCCCCAGCTGCCTTCCGCGGC
GCGCAAGAGCGCGGGCGTCCGCGACCGCAGCGCGGTGCAGCGTTTCTTCCGTATCCCCGAAACC
CGGGCGCTCCCGGGCCGGAGGCTGGCGCGCCGGGCGACGTCACCACGCGCGCCGGAAGTGCCTT
TGGGGCGAGCGGACGTCTGGCTTCGCGGGTTTCACCGGCGGCGGCGGCGGCGGCGGCGGCGCGG
CAGTGGAACTGGCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGCTATGACTACGAGCGACT
TCCGAGAGAACGAGTGCCTCCCCGGAGCCATCCCAGTGATGAATTTGGCTACAGATGGACAAGA
GATGATCATTCCACAAGCCGGCAGTCTGACTACAGGGATATGAGAGATGGCTTTAGAAGAAAGA
GTTTCTACTCTTCCCATTATTCAAGAGACCGCTCTCCCCATAAAAGGGACGCTCCGTTCTTCAG
AGAATCACCTGTAGGCCGGAAGGACTCCCCACACAGCAGGTCCGGCTCCAGTGTCAGCAGTAGA
AGCTATTCTCCAGAACGAAGCAGGACACACACCTTCCATCAGTCTCAGCACAGAAAATCCTCGC
GTGTCGGTGCTTCCTACAAACGGCAGAATGAAGCCACTCGAGGAAGAGGTAAAGAGAGATCCAT
CCAGTCTTTGAAAACTTCAAGAGACACTTCACCCTCAAGTTCGTCAGCAGTTTCTTCATCCAAG
GCGTTAGACAAGCCCAGCAGGCTCACTGAGAAGGAACTCGCTGAGGCTGAGAGCAAGTGGGCTG
CCGACACACTAGAGAGATCCGATGAAAACAACCTGGGTGAAATTTCTGAGTTTGAGGCGGGATC
CGCGGCACCCTTATTTATTGACCAGACAGAGGAACCCGAGTCAAACACAACGGACGGCACAGAA
ATGTATGAAGACAGCCAGCTCAGCAGCCGCTCTAAAGCCATCGCATCAAAAACCAAAGAGATCG
AGCAGGTTTACCGACAAGACTGTGAGACTTTCGGGATGGTGGTGAAAATGCTGATTGAAAAAGA
TCCCTCGTTAGAAAAGTCTATCCAGTTTGCACTGAGGCAGAACTTACATGAAATAGGTGAGCGC
TGTGTTGAAGAACTCAAGCATTTCATTACCGAGTACGATAATTCTACTCAAGATTTTGGAGACC
CTTTTTAGAAGAAGTAGTGCCCAGGTCAAGAAAATTTTTTTAGATTTTTTTTTTCTCCTTGGAT
TGTGTAAATCCTTACTATTTTGTGATGAAGAGAAATACTTTATGCTAGCTGACCACATTTCTAG
TATTAAATAAACATCTACAATAGCTTTTAAAGTATCTTAATTAGAATATTTCCCCTATGTGTAG
AATATTCTTCTCCATCTTCAAATACTTCCTCCCTCCAAAATAATGTTCAGTTATTTTAATGTTC
AAAAAAGCAGTTCTGGAGAGCAGCTTTCTGAGTTCAACTTGTGTTCCACAGTCTTCCATGATGT
TTCAGGATGATCCTCTTGTGTCCCGGGTAAAGGCCGACTTTGTATGTTGGTTTCTGTGCAGAGA
GCTGAGTACTGTTGGGACTTCGGTATTGTCACTCTAATTTCTCAGCAGCTTCTTAGTTGTAAAC
ATTCTCCTCCATCACCTTCTGATTGGTCTAATAAAGCCTGTAGGTCGGGAGAGGAAAGCAGGGC
ATCTGGGCAGAGAGAGGAACTATGGGAAGAATTTGTGTAGGGAATTTACCACCCAGACACAAAG
GAAGTCTGGCTTCAGGGACTGAATGAGAGATAACAGACCACGTGACAAACGTGAACCAAAATAA
ATTAAGTTATAGGAACTAGTTGAGAACAAGCCTAAGCTATAAGGCCTAGGCATTCATAAATAAT
AAAAAAAAGTCTGTGTCCTTGTTGGGCTGGTGGATCCAAACAGTCTGATAGTGAGCGTTTAGTC
TCAGCTGTTTAATTTGTAGTTAAGATCATTCCAGTTTGCATATAATAGTGGCACTGTTAGCATT
TTGAGTTGGTGATGTCAAAATATGCTATCTTAATGGGTCAGAACCTTGCTATTGTATATTTGCT
TTGATATTTCTTATTCAATATAGAAAAAAGCACTTGAAAATCTGTAAGGTTGTAAGATTTTAGA
ACAAAATCTTTCACTCAAGTCAGTGAACTTAGTTTATCTCTTCTACAAAGTGCTCTTGGGGCTC
CTAACTGTTCTTTCTATAGACTAACAGGAGGGGTCATCTGAGATACGAGATAAATTGAAGTTTG
GATGTCTCAGAAACCCTTCTGATGGCTATAGTAAAGGTCAGAATATCCAGAGCACTTAAGTTTT
GTTTGAGGCCCACACTGTATCAAAAGGGGACCTGACAAGGCACTCGTGCTTGGGTTAAGTTACA
GATTACTCTGTTAGTCTCGTGATCTCAGTGCTGTAGGTTTAGAGGGGACCTGACAAGGCACTTG
TGCTTGGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGGAGGGTTAGAGGGT
CTCTTCCTTCATAAGTGACCTCAGGAAAATGAAGCAGAAAACAGTGAGGCCAGCACAGCCACCG
TAAATAAGTAAAGAGACAATTAGGACTCTCGCTCACTTCCTGGTCCCTTCCAGCAGTTCATTGA
GGCAAAATACATAATTCATGACATTAGGCACCTTAAAAATCACTGTTTTAATCACTGCCTGATC
CTGTTATCTACTATTTTTTCAAGTTAGGGCCATACAGTATAGCCCTAGCTAGCCTGAATATCTC
TGTAGACCAGGCTAGGCCTTGAACTCACAGAAATCTTCCCACCTCTACCTCTTGCAAGCTGGCA
TTAAACCCTGTGTCACCATGCTTAGGATCCTTTTGGTTTGGTTTGATTTCATTTTCATTCAGTT
CTGTCCTTTACACTCTTTAATTTGAGACAGGGTCTTACTGTGTATTCTAGGCTGGCTTCAAACT
TTCCGCTTTGGCCTTTTTAACTCTTGGGATTCCTGCCTCAGCTTTCCTGAGTTAGAGGTGTGAA
CCCCAACGCTTGCCATTACGTTCCGTGGCCTCTATGATCCTGTCTGCAGAGATACTCCTAAATC
GCATACAGATGATATTTAAACTAGAAATGGCAGTATGAGTAATTTTAATGAGCCCTGCAATGGG
AGTGCAAAGATATTATTATGCCATTTTGAAAATTAAAAACTAATTGATGACATTTTAAGTTCCT
TAAGTGAGAACACTGGAGTTATTCCAGGCATTGCGATTCTATGCACACCTCTTCTAAGCACGTG
TGGTCAATGCTGGTCGCTTCAGCAAGACCGCATGTCATTTTTCCTTTTTTTTTTTTTTTTTTTC
TTCCACCAATTCTCAGCTCTTCAAATCAAGTTGTTAACAAACATAACTATAAAATTTGAGAAGC
TACCAGGGCAAATAAATTGTTCACTTGGTAGAAATCCATTTAAAAAAGAGTCTTACTAGTAGAT
TTATTTAAATGAAGGTCCAACCAGTGACCTTCCCTCAAATCATATTCAGCATTTGAAGCTATTT
CCAGCTTGCCGTCAGCGATGTTCTGCTAGGCTTGTCAGTGTTAAATGTTTTGTTTACCATTTTT
TAAAAAATGCTTCAACATCTAAAATTCATGTGTACTAGAATATGTATTTTATAAATGTTTTTGA
TTCTAAGAGATGTGTTTGTAAATTATCCACTGTTTTTCAGTATACTGAATTCGTGTGTTATGTT
TTCATTGTCTCACCATAAGGCCTTGATGATCAATATGGGGGAAGCAGACACTGTAAAATGCAAA
ATAAAGCGCCCAGTACTAAGTAA

hide sequence

RefSeq Acc Id:

XM_006242235 ⟹ XP_006242297

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,051 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,605 - 124,629,985 (+)	NCBI
Rnor_6.0	7	134,602,298 - 134,693,807 (+)	NCBI
Rnor_5.0	7	134,269,149 - 134,361,038 (+)	NCBI

Sequence:

show sequence

CTTTGGGGCGAGCGGACGTCTGGCTTCGCGGGTTTCACCGGCGGCGGCGGCGGCGGCGGCGGCG
CGGCAGTGGAACGTAGTGGCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGCTATGACTACG
AGCGACTTCCGAGAGAACGAGTGCCTCCCCGGAGCCATCCCAGTGATGAATTTGGCTACAGATG
GACAAGAGATGATCATTCCACAAGCCGGCAGTCTGACTACAGGGATATGAGAGATGGCTTTAGA
AGAAAGAGTTTCTACTCTTCCCATTATTCAAGAGACCGCTCTCCCCATAAAAGGGACGCTCCGT
TCTTCAGAGAATCACCTGTAGGCCGGAAGGACTCCCCACACAGCAGGTCCGGCTCCAGTGTCAG
CAGTAGAAGCTATTCTCCAGAACGAAGCAGGACACACACCTTCCATCAGTCTCAGCACAGAAAA
TCCTCGCGTGTCGGTGCTTCCTACAAACGGCAGAATGAAGCCACTCGAGGAAGAGGTAAAGAGA
GATCCATCCAGTCTTTGAAAACTTCAAGAGACACTTCACCCTCAAGTTCGTCAGCAGTTTCTTC
ATCCAAGGCGTTAGACAAGCCCAGCAGGCTCACTGAGAAGGAACTCGCTGAGGCTGAGAGCAAG
TGGGCTGCCGACACACTAGAGAGATCCGATGAAAACAACCTGGGTGAAATTTCTGAGTTTGAGG
CGGGATCCGCGGCACCCTTATTTATTGACCAGACAGAGGAACCCGAGTCAAACACAACGGACGG
CACAGAAATGTATGAAGACAGCCAGCTCAGCAGCCGCTCTAAAGCCATCGCATCAAAAACCAAA
GAGATCGAGCAGGTTTACCGACAAGACTGTGAGACTTTCGGGATGGTGGTGAAAATGCTGATTG
AAAAAGATCCCTCGTTAGAAAAGTCTATCCAGTTTGCACTGAGGCAGAACTTACATGAAATAGG
TGAGCGCTGTGTTGAAGAACTCAAGCATTTCATTACCGAGTACGATAATTCTACTCAAGATTTT
GGAGACCCTTTTTAGAAGAAGTAGTGCCCAGGTCAAGAAAATTTTTTTAGATTTTTTTTTTCTC
CTTGGATTGTGTAAATCCTTACTATTTTGTGATGAAGAGAAATACTTTATGCTAGCTGACCACA
TTTCTAGTATTAAATAAACATCTACAATAGCTTTTAAAGTATCTTAATTAGAATATTTCCCCTA
TGTGTAGAATATTCTTCTCCATCTTCAAATACTTCCTCCCTCCAAAATAATGTTCAGTTATTTT
AATGTTCAAAAAAGCAGTTCTGGAGAGCAGCTTTCTGAGTTCAACTTGTGTTCCACAGTCTTCC
ATGATGTTTCAGGATGATCCTCTTGTGTCCCGGGTAAAGGCCGACTTTGTATGTTGGTTTCTGT
GCAGAGAGCTGAGTACTGTTGGGACTTCGGTATTGTCACTCTAATTTCTCAGCAGCTTCTTAGT
TGTAAACATTCTCCTCCATCACCTTCTGATTGGTCTAATAAAGCCTGTAGGTCGGGAGAGGAAA
GCAGGGCATCTGGGCAGAGAGAGGAACTATGGGAAGAATTTGTGTAGGGAATTTACCACCCAGA
CACAAAGGAAGTCTGGCTTCAGGGACTGAATGAGAGATAACAGACCACGTGACAAACGTGAACC
AAAATAAATTAAGTTATAGGAACTAGTTGAGAACAAGCCTAAGCTATAAGGCCTAGGCATTCAT
AAATAATAAAAAAAAGTCTGTGTCCTTGTTGGGCTGGTGGATCCAAACAGTCTGATAGTGAGCG
TTTAGTCTCAGCTGTTTAATTTGTAGTTAAGATCATTCCAGTTTGCATATAATAGTGGCACTGT
TAGCATTTTGAGTTGGTGATGTCAAAATATGCTATCTTAATGGGTCAGAACCTTGCTATTGTAT
ATTTGCTTTGATATTTCTTATTCAATATAGAAAAAAGCACTTGAAAATCTGTAAGGTTGTAAGA
TTTTAGAACAAAATCTTTCACTCAAGTCAGTGAACTTAGTTTATCTCTTCTACAAAGTGCTCTT
GGGGCTCCTAACTGTTCTTTCTATAGACTAACAGGAGGGGTCATCTGAGATACGAGATAAATTG
AAGTTTGGATGTCTCAGAAACCCTTCTGATGGCTATAGTAAAGGTCAGAATATCCAGAGCACTT
AAGTTTTGTTTGAGGCCCACACTGTATCAAAAGGGGACCTGACAAGGCACTCGTGCTTGGGTTA
AGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGTAGGTTTAGAGGGGACCTGACAAG
GCACTTGTGCTTGGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGGAGGGTT
AGAGGGTCTCTTCCTTCATAAGTGACCTCAGGAAAATGAAGCAGAAAACAGTGAGGCCAGCACA
GCCACCGTAAATAAGTAAAGAGACAATTAGGACTCTCGCTCACTTCCTGGTCCCTTCCAGCAGT
TCATTGAGGCAAAATACATAATTCATGACATTAGGCACCTTAAAAATCACTGTTTTAATCACTG
CCTGATCCTGTTATCTACTATTTTTTCAAGTTAGGGCCATACAGTATAGCCCTAGCTAGCCTGA
ATATCTCTGTAGACCAGGCTAGGCCTTGAACTCACAGAAATCTTCCCACCTCTACCTCTTGCAA
GCTGGCATTAAACCCTGTGTCACCATGCTTAGGATCCTTTTGGTTTGGTTTGATTTCATTTTCA
TTCAGTTCTGTCCTTTACACTCTTTAATTTGAGACAGGGTCTTACTGTGTATTCTAGGCTGGCT
TCAAACTTTCCGCTTTGGCCTTTTTAACTCTTGGGATTCCTGCCTCAGCTTTCCTGAGTTAGAG
GTGTGAACCCCAACGCTTGCCATTACGTTCCGTGGCCTCTATGATCCTGTCTGCAGAGATACTC
CTAAATCGCATACAGATGATATTTAAACTAGAAATGGCAGTATGAGTAATTTTAATGAGCCCTG
CAATGGGAGTGCAAAGATATTATTATGCCATTTTGAAAATTAAAAACTAATTGATGACATTTTA
AGTTCCTTAAGTGAGAACACTGGAGTTATTCCAGGCATTGCGATTCTATGCACACCTCTTCTAA
GCACGTGTGGTCAATGCTGGTCGCTTCAGCAAGACCGCATGTCATTTTTCCTTTTTTTTTTTTT
TTTTTTCTTCCACCAATTCTCAGCTCTTCAAATCAAGTTGTTAACAAACATAACTATAAAATTT
GAGAAGCTACCAGGGCAAATAAATTGTTCACTTGGTAGAAATCCATTTAAAAAAGAGTCTTACT
AGTAGATTTATTTAAATGAAGGTCCAACCAGTGACCTTCCCTCAAATCATATTCAGCATTTGAA
GCTATTTCCAGCTTGCCGTCAGCGATGTTCTGCTAGGCTTGTCAGTGTTAAATGTTTTGTTTAC
CATTTTTTAAAAAATGCTTCAACATCTAAAATTCATGTGTACTAGAATATGTATTTTATAAATG
TTTTTGATTCTAAGAGATGTGTTTGTAAATTATCCACTGTTTTTCAGTATACTGAATTCGTGTG
TTATGTTTTCATTGTCTCACCATAAGGCCTTGATGATCAATATGGGGGAAGCAGACACTGTAAA
ATGCAAAATAAAGCGCCCAGTACTAAGTAA

hide sequence

RefSeq Acc Id:

XM_006242236 ⟹ XP_006242298

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,051 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,605 - 124,629,985 (+)	NCBI
Rnor_6.0	7	134,602,252 - 134,693,807 (+)	NCBI
Rnor_5.0	7	134,269,149 - 134,361,038 (+)	NCBI

Sequence:

show sequence

CGGAGGCTGGCGCGCCGGGCGACGTCACCACGCGCGCCGGAAGTGCCTTTGGGGCGAGCGGACG
TCTGGCTTCGCGGGTTTCACCGGCGGCGGCGGCGGCGGCGGCGGCGCGGCAGTGGAACGTAGTG
GCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGCTATGACTACGAGCGACTTCCGAGAGAAC
GAGTGCCTCCCCGGAGCCATCCCAGTGATGGCTACCATAGAGTAGTTAATGTTGTGCCAAAGAG
ACCACCTCTCCTAGACAAGAGACCACCTCTCCTAGACAAGAGACCACCTCTGCTAGCCAGACCC
GATGAAGGCTACAATAGATATTACACTCATGTTGATTGCCGAGTATGTAACGAGGGCCGCAGTT
TTTCTCATGATCGAAGAAGTGGCCCATCTCACAGAGGAGATGAATTTGGCTACAGATGGACAAG
AGATGATCATTCCACAAGCCGGCAGTCTGACTACAGGGATATGAGAGATGGCTTTAGAAGAAAG
AGTTTCTACTCTTCCCATTATTCAAGAGACCGCTCTCCCCATAAAAGGGACGCTCCGTTCTTCA
GAGAATCACCTGTAGGCCGGAAGGACTCCCCACACAGCAGGTCCGGCTCCAGTGTCAGCAGTAG
AAGCTATTCTCCAGAACGAAGCAGGACACACACCTTCCATCAGTCTCAGCACAGAAAATCCTCG
CGTGTCGGTGCTTCCTACAAACGGCAGAATGAAGCCACTCGAGGAAGAGGTAAAGAGAGATCCA
TCCAGTCTTTGAAAACTTCAAGAGACACTTCACCCTCAAGTTCGTCAGCAGTTTCTTCATCCAA
GGCGTTAGACAAGCCCAGCAGGCTCACTGAGAAGGAACTCGCTGAGGCTGAGAGCAAGTGGGCT
GCCGACACACTAGAGAGATCCGATGAAAACAACCTGGGTGAAATTTCTGAGTTTGAGGCGGGAT
CCGCGGCACCCTTATTTATTGACCAGACAGAGGAACCCGAGTCAAACACAACGGACGGCACAGA
AATGTATGAAGACAGCCAGCTCAGCAGCCGCTCTAAAGCCATCGCATCAAAAACCAAAGAGATC
GAGCAGGTTTACCGACAAGACTGTGAGACTTTCGGGATGGTGGTGAAAATGCTGATTGAAAAAG
ATCCCTCGTTAGAAAAGTCTATCCAGTTTGCACTGAGGCAGAACTTACATGAAATAGGTGAGCG
CTGTGTTGAAGAACTCAAGCATTTCATTACCGAGTACGATAATTCTACTCAAGATTTTGGAGAC
CCTTTTTAGAAGAAGTAGTGCCCAGGTCAAGAAAATTTTTTTAGATTTTTTTTTTCTCCTTGGA
TTGTGTAAATCCTTACTATTTTGTGATGAAGAGAAATACTTTATGCTAGCTGACCACATTTCTA
GTATTAAATAAACATCTACAATAGCTTTTAAAGTATCTTAATTAGAATATTTCCCCTATGTGTA
GAATATTCTTCTCCATCTTCAAATACTTCCTCCCTCCAAAATAATGTTCAGTTATTTTAATGTT
CAAAAAAGCAGTTCTGGAGAGCAGCTTTCTGAGTTCAACTTGTGTTCCACAGTCTTCCATGATG
TTTCAGGATGATCCTCTTGTGTCCCGGGTAAAGGCCGACTTTGTATGTTGGTTTCTGTGCAGAG
AGCTGAGTACTGTTGGGACTTCGGTATTGTCACTCTAATTTCTCAGCAGCTTCTTAGTTGTAAA
CATTCTCCTCCATCACCTTCTGATTGGTCTAATAAAGCCTGTAGGTCGGGAGAGGAAAGCAGGG
CATCTGGGCAGAGAGAGGAACTATGGGAAGAATTTGTGTAGGGAATTTACCACCCAGACACAAA
GGAAGTCTGGCTTCAGGGACTGAATGAGAGATAACAGACCACGTGACAAACGTGAACCAAAATA
AATTAAGTTATAGGAACTAGTTGAGAACAAGCCTAAGCTATAAGGCCTAGGCATTCATAAATAA
TAAAAAAAAGTCTGTGTCCTTGTTGGGCTGGTGGATCCAAACAGTCTGATAGTGAGCGTTTAGT
CTCAGCTGTTTAATTTGTAGTTAAGATCATTCCAGTTTGCATATAATAGTGGCACTGTTAGCAT
TTTGAGTTGGTGATGTCAAAATATGCTATCTTAATGGGTCAGAACCTTGCTATTGTATATTTGC
TTTGATATTTCTTATTCAATATAGAAAAAAGCACTTGAAAATCTGTAAGGTTGTAAGATTTTAG
AACAAAATCTTTCACTCAAGTCAGTGAACTTAGTTTATCTCTTCTACAAAGTGCTCTTGGGGCT
CCTAACTGTTCTTTCTATAGACTAACAGGAGGGGTCATCTGAGATACGAGATAAATTGAAGTTT
GGATGTCTCAGAAACCCTTCTGATGGCTATAGTAAAGGTCAGAATATCCAGAGCACTTAAGTTT
TGTTTGAGGCCCACACTGTATCAAAAGGGGACCTGACAAGGCACTCGTGCTTGGGTTAAGTTAC
AGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGTAGGTTTAGAGGGGACCTGACAAGGCACTT
GTGCTTGGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGGAGGGTTAGAGGG
TCTCTTCCTTCATAAGTGACCTCAGGAAAATGAAGCAGAAAACAGTGAGGCCAGCACAGCCACC
GTAAATAAGTAAAGAGACAATTAGGACTCTCGCTCACTTCCTGGTCCCTTCCAGCAGTTCATTG
AGGCAAAATACATAATTCATGACATTAGGCACCTTAAAAATCACTGTTTTAATCACTGCCTGAT
CCTGTTATCTACTATTTTTTCAAGTTAGGGCCATACAGTATAGCCCTAGCTAGCCTGAATATCT
CTGTAGACCAGGCTAGGCCTTGAACTCACAGAAATCTTCCCACCTCTACCTCTTGCAAGCTGGC
ATTAAACCCTGTGTCACCATGCTTAGGATCCTTTTGGTTTGGTTTGATTTCATTTTCATTCAGT
TCTGTCCTTTACACTCTTTAATTTGAGACAGGGTCTTACTGTGTATTCTAGGCTGGCTTCAAAC
TTTCCGCTTTGGCCTTTTTAACTCTTGGGATTCCTGCCTCAGCTTTCCTGAGTTAGAGGTGTGA
ACCCCAACGCTTGCCATTACGTTCCGTGGCCTCTATGATCCTGTCTGCAGAGATACTCCTAAAT
CGCATACAGATGATATTTAAACTAGAAATGGCAGTATGAGTAATTTTAATGAGCCCTGCAATGG
GAGTGCAAAGATATTATTATGCCATTTTGAAAATTAAAAACTAATTGATGACATTTTAAGTTCC
TTAAGTGAGAACACTGGAGTTATTCCAGGCATTGCGATTCTATGCACACCTCTTCTAAGCACGT
GTGGTCAATGCTGGTCGCTTCAGCAAGACCGCATGTCATTTTTCCTTTTTTTTTTTTTTTTTTT
CTTCCACCAATTCTCAGCTCTTCAAATCAAGTTGTTAACAAACATAACTATAAAATTTGAGAAG
CTACCAGGGCAAATAAATTGTTCACTTGGTAGAAATCCATTTAAAAAAGAGTCTTACTAGTAGA
TTTATTTAAATGAAGGTCCAACCAGTGACCTTCCCTCAAATCATATTCAGCATTTGAAGCTATT
TCCAGCTTGCCGTCAGCGATGTTCTGCTAGGCTTGTCAGTGTTAAATGTTTTGTTTACCATTTT
TTAAAAAATGCTTCAACATCTAAAATTCATGTGTACTAGAATATGTATTTTATAAATGTTTTTG
ATTCTAAGAGATGTGTTTGTAAATTATCCACTGTTTTTCAGTATACTGAATTCGTGTGTTATGT
TTTCATTGTCTCACCATAAGGCCTTGATGATCAATATGGGGGAAGCAGACACTGTAAAATGCAA
AATAAAGCGCCCAGTACTAAGTAA

hide sequence

RefSeq Acc Id:

XM_017595022 ⟹ XP_017450511

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,042 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,594 - 124,629,985 (+)	NCBI
Rnor_6.0	7	134,602,363 - 134,693,807 (+)	NCBI

Sequence:

show sequence

GGCAGTGGAACGTAGCACATACAGACCAGGCCTGTAACTACTCCCTGGGAACCTGCGTGTCAGC
AGCCCGGAGCCCAGAGCCTGTCGTGGAGCCTGCACAATCAATCCTGACTGAAGCGGAGGGCCGA
AGTGCAATCCACCCAGGGCGCAGCTGAGTTTTGAGAGGCATTAATTCCTTGGCGTCCACCAAGG
GACCACTGGGACTAATTCTCATGGCAAACTTGTGGCCAGCCCAAACTACCAAGCTTCACATTCC
GGTTGTGCTTGGTTATCGCCCAAGATTGGCTTCCACAAGAGATGAAATGTGGTCTGAGGGACGC
TATGACTACGAGCGACTTCCGAGAGAACGAGTGCCTCCCCGGAGCCATCCCAGTGATGGCTACC
ATAGAGTAGTTAATGTTGTGCCAAAGAGACCACCTCTCCTAGACAAGAGACCACCTCTCCTAGA
CAAGAGACCACCTCTGCTAGCCAGACCCGATGAAGGCTACAATAGATATTACACTCATGTTGAT
TGCCGAGTATGTAACGAGGGCCGCAGTTTTTCTCATGATCGAAGAAGTGGCCCATCTCACAGAG
GAGATGAATTTGGCTACAGATGGACAAGAGATGATCATTCCACAAGCCGGCAGTCTGACTACAG
GGATATGAGAGATGGCTTTAGAAGAAAGAGTTTCTACTCTTCCCATTATTCAAGAGACCGCTCT
CCCCATAAAAGGGACGCTCCGTTCTTCAGAGAATCACCTGTAGGCCGGAAGGACTCCCCACACA
GCAGGTCCGGCTCCAGTGTCAGCAGTAGAAGCTATTCTCCAGAACGAAGCAGGACACACACCTT
CCATCAGTCTCAGCACAGAAAATCCTCGCGTGTCGGTGCTTCCTACAAACGGCAGAATGAAGCC
ACTCGAGGAAGAGGTAAAGAGAGATCCATCCAGTCTTTGAAAACTTCAAGAGACACTTCACCCT
CAAGTTCGTCAGCAGTTTCTTCATCCAAGGCGTTAGACAAGCCCAGCAGGCTCACTGAGAAGGA
ACTCGCTGAGGCTGAGAGCAAGTGGGCTGCCGACACACTAGAGAGATCCGATGAAAACAACCTG
GGTGAAATTTCTGAGTTTGAGGCGGGATCCGCGGCACCCTTATTTATTGACCAGACAGAGGAAC
CCGAGTCAAACACAACGGACGGCACAGAAATGTATGAAGACAGCCAGCTCAGCAGCCGCTCTAA
AGCCATCGCATCAAAAACCAAAGAGATCGAGCAGGTTTACCGACAAGACTGTGAGACTTTCGGG
ATGGTGGTGAAAATGCTGATTGAAAAAGATCCCTCGTTAGAAAAGTCTATCCAGTTTGCACTGA
GGCAGAACTTACATGAAATAGGTGAGCGCTGTGTTGAAGAACTCAAGCATTTCATTACCGAGTA
CGATAATTCTACTCAAGATTTTGGAGACCCTTTTTAGAAGAAGTAGTGCCCAGGTCAAGAAAAT
TTTTTTAGATTTTTTTTTTCTCCTTGGATTGTGTAAATCCTTACTATTTTGTGATGAAGAGAAA
TACTTTATGCTAGCTGACCACATTTCTAGTATTAAATAAACATCTACAATAGCTTTTAAAGTAT
CTTAATTAGAATATTTCCCCTATGTGTAGAATATTCTTCTCCATCTTCAAATACTTCCTCCCTC
CAAAATAATGTTCAGTTATTTTAATGTTCAAAAAAGCAGTTCTGGAGAGCAGCTTTCTGAGTTC
AACTTGTGTTCCACAGTCTTCCATGATGTTTCAGGATGATCCTCTTGTGTCCCGGGTAAAGGCC
GACTTTGTATGTTGGTTTCTGTGCAGAGAGCTGAGTACTGTTGGGACTTCGGTATTGTCACTCT
AATTTCTCAGCAGCTTCTTAGTTGTAAACATTCTCCTCCATCACCTTCTGATTGGTCTAATAAA
GCCTGTAGGTCGGGAGAGGAAAGCAGGGCATCTGGGCAGAGAGAGGAACTATGGGAAGAATTTG
TGTAGGGAATTTACCACCCAGACACAAAGGAAGTCTGGCTTCAGGGACTGAATGAGAGATAACA
GACCACGTGACAAACGTGAACCAAAATAAATTAAGTTATAGGAACTAGTTGAGAACAAGCCTAA
GCTATAAGGCCTAGGCATTCATAAATAATAAAAAAAAGTCTGTGTCCTTGTTGGGCTGGTGGAT
CCAAACAGTCTGATAGTGAGCGTTTAGTCTCAGCTGTTTAATTTGTAGTTAAGATCATTCCAGT
TTGCATATAATAGTGGCACTGTTAGCATTTTGAGTTGGTGATGTCAAAATATGCTATCTTAATG
GGTCAGAACCTTGCTATTGTATATTTGCTTTGATATTTCTTATTCAATATAGAAAAAAGCACTT
GAAAATCTGTAAGGTTGTAAGATTTTAGAACAAAATCTTTCACTCAAGTCAGTGAACTTAGTTT
ATCTCTTCTACAAAGTGCTCTTGGGGCTCCTAACTGTTCTTTCTATAGACTAACAGGAGGGGTC
ATCTGAGATACGAGATAAATTGAAGTTTGGATGTCTCAGAAACCCTTCTGATGGCTATAGTAAA
GGTCAGAATATCCAGAGCACTTAAGTTTTGTTTGAGGCCCACACTGTATCAAAAGGGGACCTGA
CAAGGCACTCGTGCTTGGGTTAAGTTACAGATTACTCTGTTAGTCTCGTGATCTCAGTGCTGTA
GGTTTAGAGGGGACCTGACAAGGCACTTGTGCTTGGTTAAGTTACAGATTACTCTGTTAGTCTC
GTGATCTCAGTGCTGGAGGGTTAGAGGGTCTCTTCCTTCATAAGTGACCTCAGGAAAATGAAGC
AGAAAACAGTGAGGCCAGCACAGCCACCGTAAATAAGTAAAGAGACAATTAGGACTCTCGCTCA
CTTCCTGGTCCCTTCCAGCAGTTCATTGAGGCAAAATACATAATTCATGACATTAGGCACCTTA
AAAATCACTGTTTTAATCACTGCCTGATCCTGTTATCTACTATTTTTTCAAGTTAGGGCCATAC
AGTATAGCCCTAGCTAGCCTGAATATCTCTGTAGACCAGGCTAGGCCTTGAACTCACAGAAATC
TTCCCACCTCTACCTCTTGCAAGCTGGCATTAAACCCTGTGTCACCATGCTTAGGATCCTTTTG
GTTTGGTTTGATTTCATTTTCATTCAGTTCTGTCCTTTACACTCTTTAATTTGAGACAGGGTCT
TACTGTGTATTCTAGGCTGGCTTCAAACTTTCCGCTTTGGCCTTTTTAACTCTTGGGATTCCTG
CCTCAGCTTTCCTGAGTTAGAGGTGTGAACCCCAACGCTTGCCATTACGTTCCGTGGCCTCTAT
GATCCTGTCTGCAGAGATACTCCTAAATCGCATACAGATGATATTTAAACTAGAAATGGCAGTA
TGAGTAATTTTAATGAGCCCTGCAATGGGAGTGCAAAGATATTATTATGCCATTTTGAAAATTA
AAAACTAATTGATGACATTTTAAGTTCCTTAAGTGAGAACACTGGAGTTATTCCAGGCATTGCG
ATTCTATGCACACCTCTTCTAAGCACGTGTGGTCAATGCTGGTCGCTTCAGCAAGACCGCATGT
CATTTTTCCTTTTTTTTTTTTTTTTTTTCTTCCACCAATTCTCAGCTCTTCAAATCAAGTTGTT
AACAAACATAACTATAAAATTTGAGAAGCTACCAGGGCAAATAAATTGTTCACTTGGTAGAAAT
CCATTTAAAAAAGAGTCTTACTAGTAGATTTATTTAAATGAAGGTCCAACCAGTGACCTTCCCT
CAAATCATATTCAGCATTTGAAGCTATTTCCAGCTTGCCGTCAGCGATGTTCTGCTAGGCTTGT
CAGTGTTAAATGTTTTGTTTACCATTTTTTAAAAAATGCTTCAACATCTAAAATTCATGTGTAC
TAGAATATGTATTTTATAAATGTTTTTGATTCTAAGAGATGTGTTTGTAAATTATCCACTGTTT
TTCAGTATACTGAATTCGTGTGTTATGTTTTCATTGTCTCACCATAAGGCCTTGATGATCAATA
TGGGGGAAGCAGACACTGTAAAATGCAAAATAAAGCGCCCAGTACTAAGTAA

hide sequence

RefSeq Acc Id:

XM_039079695 ⟹ XP_038935623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,051 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,605 - 124,629,985 (+)	NCBI

RefSeq Acc Id:

XM_039079698 ⟹ XP_038935626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,051 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,605 - 124,629,985 (+)	NCBI

RefSeq Acc Id:

XM_039079699 ⟹ XP_038935627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,450,769 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,571,319 - 124,629,985 (+)	NCBI

RefSeq Acc Id:

XM_039079700 ⟹ XP_038935628

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,080 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,538,637 - 124,629,985 (+)	NCBI

RefSeq Acc Id:

XM_039079701 ⟹ XP_038935629

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,453,886 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,574,368 - 124,629,985 (+)	NCBI

RefSeq Acc Id:

XM_039079702 ⟹ XP_038935630

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,452,203 - 126,509,430 (+)	NCBI
mRatBN7.2	7	124,572,769 - 124,629,985 (+)	NCBI

RefSeq Acc Id:

XM_039079705 ⟹ XP_038935633

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,051 - 126,468,939 (+)	NCBI
mRatBN7.2	7	124,538,605 - 124,586,204 (+)	NCBI

RefSeq Acc Id:

XM_063264060 ⟹ XP_063120130

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,067 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XM_063264061 ⟹ XP_063120131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,067 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XM_063264062 ⟹ XP_063120132

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,067 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XM_063264063 ⟹ XP_063120133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,067 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XM_063264064 ⟹ XP_063120134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,108 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XM_063264065 ⟹ XP_063120135

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,453,796 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XM_063264066 ⟹ XP_063120136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,450,754 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XM_063264067 ⟹ XP_063120137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,067 - 126,468,939 (+)	NCBI

RefSeq Acc Id:

XM_063264068 ⟹ XP_063120138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,453,838 - 126,509,430 (+)	NCBI

RefSeq Acc Id:

XR_010053024

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	7	126,418,067 - 126,483,321 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102462	(Get FASTA)	NCBI Sequence Viewer
	NP_001426944	(Get FASTA)	NCBI Sequence Viewer
	NP_001426945	(Get FASTA)	NCBI Sequence Viewer
	NP_001426946	(Get FASTA)	NCBI Sequence Viewer
	NP_001426947	(Get FASTA)	NCBI Sequence Viewer
	NP_001426948	(Get FASTA)	NCBI Sequence Viewer
	NP_001426949	(Get FASTA)	NCBI Sequence Viewer
	NP_001426950	(Get FASTA)	NCBI Sequence Viewer
	NP_001426951	(Get FASTA)	NCBI Sequence Viewer
	NP_001426952	(Get FASTA)	NCBI Sequence Viewer
	NP_001426953	(Get FASTA)	NCBI Sequence Viewer
	NP_001426954	(Get FASTA)	NCBI Sequence Viewer
	NP_001426955	(Get FASTA)	NCBI Sequence Viewer
	NP_001426956	(Get FASTA)	NCBI Sequence Viewer
	NP_001426957	(Get FASTA)	NCBI Sequence Viewer
	NP_001426958	(Get FASTA)	NCBI Sequence Viewer
	XP_006242292	(Get FASTA)	NCBI Sequence Viewer
	XP_006242295	(Get FASTA)	NCBI Sequence Viewer
	XP_006242297	(Get FASTA)	NCBI Sequence Viewer
	XP_006242298	(Get FASTA)	NCBI Sequence Viewer
	XP_017450511	(Get FASTA)	NCBI Sequence Viewer
	XP_038935623	(Get FASTA)	NCBI Sequence Viewer
	XP_038935626	(Get FASTA)	NCBI Sequence Viewer
	XP_038935627	(Get FASTA)	NCBI Sequence Viewer
	XP_038935628	(Get FASTA)	NCBI Sequence Viewer
	XP_038935629	(Get FASTA)	NCBI Sequence Viewer
	XP_038935630	(Get FASTA)	NCBI Sequence Viewer
	XP_038935633	(Get FASTA)	NCBI Sequence Viewer
	XP_063120130	(Get FASTA)	NCBI Sequence Viewer
	XP_063120131	(Get FASTA)	NCBI Sequence Viewer
	XP_063120132	(Get FASTA)	NCBI Sequence Viewer
	XP_063120133	(Get FASTA)	NCBI Sequence Viewer
	XP_063120134	(Get FASTA)	NCBI Sequence Viewer
	XP_063120135	(Get FASTA)	NCBI Sequence Viewer
	XP_063120136	(Get FASTA)	NCBI Sequence Viewer
	XP_063120137	(Get FASTA)	NCBI Sequence Viewer
	XP_063120138	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66484	(Get FASTA)	NCBI Sequence Viewer
	EDL76625	(Get FASTA)	NCBI Sequence Viewer
	EDL76626	(Get FASTA)	NCBI Sequence Viewer
	EDL76627	(Get FASTA)	NCBI Sequence Viewer
	EDL76628	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000052548
	ENSRNOP00000052548.2
	ENSRNOP00000072231.1
	ENSRNOP00000087331
	ENSRNOP00000087331.2
	ENSRNOP00000087420.2
	ENSRNOP00000097952
	ENSRNOP00000097952.1

RefSeq Acc Id:

NP_001102462 ⟸ NM_001108992

- UniProtKB:

D4A9M4 (UniProtKB/TrEMBL), A6K7T2 (UniProtKB/TrEMBL), A0A0G2K2G1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MANLWPAQTTKLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERVPPRSHPSDGYHRVVNVV
PKRPPLLDKRPPLLDKRPPLLARPDEGYNRYYTHVDCRVCNEGRSFSHDRRSGPSHRGDEFGYR
WTRDDHSTSRQSDYRDMRDGFRRKSFYSSHYSRDRSPHKRDAPFFRESPVGRKDSPHSRSGSSV
SSRSYSPERSRTHTFHQSQHRKSSRVGASYKRQNEATRGRGKERSIQSLKTSRDTSPSSSSAVS
SSKALDKPSRLTEKELAEAESKWAADTLERSDENNLGEISEFEAGSAAPLFIDQTEEPESNTTD
GTEMYEDSQLSSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEI
GERCVEELKHFITEYDNSTQDFGDPF

hide sequence

RefSeq Acc Id:

XP_006242292 ⟸ XM_006242230

- Peptide Label:

isoform X3

- Sequence:

show sequence

MRARGGSTPSCLPRRARARASATAARCSVSSVSPKPGRSRAGGWRAGRRHHARRKCLWGERTSG
FAGFTGGGGGGGGAAVELASTRDEMWSEGRYDYERLPRERVPPRSHPSDGYHRVVNVVPKRPPL
LDKRPPLLDKRPPLLARPDEGYNRYYTHVDCRVCNEGRSFSHDRRSGPSHRGDEFGYRWTRDDH
STSRQSDYRDMRDGFRRKSFYSSHYSRDRSPHKRDAPFFRESPVGRKDSPHSRSGSSVSSRSYS
PERSRTHTFHQSQHRKSSRVGASYKRQNEATRGRGKERSIQSLKTSRDTSPSSSSAVSSSKALD
KPSRLTEKELAEAESKWAADTLERSDENNLGEISEFEAGSAAPLFIDQTEEPESNTTDGTEMYE
DSQLSSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVE
ELKHFITEYDNSTQDFGDPF

hide sequence

RefSeq Acc Id:

XP_006242295 ⟸ XM_006242233

- Peptide Label:

isoform X7

- Sequence:

show sequence

MRARGGSTPSCLPRRARARASATAARCSVSSVSPKPGRSRAGGWRAGRRHHARRKCLWGERTSG
FAGFTGGGGGGGGAAVELASTRDEMWSEGRYDYERLPRERVPPRSHPSDEFGYRWTRDDHSTSR
QSDYRDMRDGFRRKSFYSSHYSRDRSPHKRDAPFFRESPVGRKDSPHSRSGSSVSSRSYSPERS
RTHTFHQSQHRKSSRVGASYKRQNEATRGRGKERSIQSLKTSRDTSPSSSSAVSSSKALDKPSR
LTEKELAEAESKWAADTLERSDENNLGEISEFEAGSAAPLFIDQTEEPESNTTDGTEMYEDSQL
SSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKH
FITEYDNSTQDFGDPF

hide sequence

RefSeq Acc Id:

XP_006242297 ⟸ XM_006242235

- Peptide Label:

isoform X7

- Sequence:

show sequence

MWSEGRYDYERLPRERVPPRSHPSDEFGYRWTRDDHSTSRQSDYRDMRDGFRRKSFYSSHYSRD
RSPHKRDAPFFRESPVGRKDSPHSRSGSSVSSRSYSPERSRTHTFHQSQHRKSSRVGASYKRQN
EATRGRGKERSIQSLKTSRDTSPSSSSAVSSSKALDKPSRLTEKELAEAESKWAADTLERSDEN
NLGEISEFEAGSAAPLFIDQTEEPESNTTDGTEMYEDSQLSSRSKAIASKTKEIEQVYRQDCET
FGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF

hide sequence

RefSeq Acc Id:

XP_006242298 ⟸ XM_006242236

- Peptide Label:

isoform X3

- Sequence:

show sequence

MWSEGRYDYERLPRERVPPRSHPSDGYHRVVNVVPKRPPLLDKRPPLLDKRPPLLARPDEGYNR
YYTHVDCRVCNEGRSFSHDRRSGPSHRGDEFGYRWTRDDHSTSRQSDYRDMRDGFRRKSFYSSH
YSRDRSPHKRDAPFFRESPVGRKDSPHSRSGSSVSSRSYSPERSRTHTFHQSQHRKSSRVGASY
KRQNEATRGRGKERSIQSLKTSRDTSPSSSSAVSSSKALDKPSRLTEKELAEAESKWAADTLER
SDENNLGEISEFEAGSAAPLFIDQTEEPESNTTDGTEMYEDSQLSSRSKAIASKTKEIEQVYRQ
DCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEIGERCVEELKHFITEYDNSTQDFGDPF

hide sequence

RefSeq Acc Id:

XP_017450511 ⟸ XM_017595022

- Peptide Label:

isoform X1

- Sequence:

show sequence

MANLWPAQTTKLHIPVVLGYRPRLASTRDEMWSEGRYDYERLPRERVPPRSHPSDGYHRVVNVV
PKRPPLLDKRPPLLDKRPPLLARPDEGYNRYYTHVDCRVCNEGRSFSHDRRSGPSHRGDEFGYR
WTRDDHSTSRQSDYRDMRDGFRRKSFYSSHYSRDRSPHKRDAPFFRESPVGRKDSPHSRSGSSV
SSRSYSPERSRTHTFHQSQHRKSSRVGASYKRQNEATRGRGKERSIQSLKTSRDTSPSSSSAVS
SSKALDKPSRLTEKELAEAESKWAADTLERSDENNLGEISEFEAGSAAPLFIDQTEEPESNTTD
GTEMYEDSQLSSRSKAIASKTKEIEQVYRQDCETFGMVVKMLIEKDPSLEKSIQFALRQNLHEI
GERCVEELKHFITEYDNSTQDFGDPF

hide sequence

Ensembl Acc Id:

ENSRNOP00000052548 ⟸ ENSRNOT00000055688

Ensembl Acc Id:

ENSRNOP00000072231 ⟸ ENSRNOT00000090908

RefSeq Acc Id:	XP_038935623 ⟸ XM_039079695
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038935626 ⟸ XM_039079698
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038935633 ⟸ XM_039079705
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_038935628 ⟸ XM_039079700
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_038935627 ⟸ XM_039079699
- Peptide Label:	isoform X9
- UniProtKB:	B2GV12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935630 ⟸ XM_039079702
- Peptide Label:	isoform X10
- UniProtKB:	B2GV12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038935629 ⟸ XM_039079701
- Peptide Label:	isoform X10
- UniProtKB:	B2GV12 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000087331 ⟸ ENSRNOT00000098702

Ensembl Acc Id:

ENSRNOP00000087420 ⟸ ENSRNOT00000115812

Ensembl Acc Id:

ENSRNOP00000097952 ⟸ ENSRNOT00000102144

RefSeq Acc Id:	XP_063120130 ⟸ XM_063264060
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063120131 ⟸ XM_063264061
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063120132 ⟸ XM_063264062
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063120133 ⟸ XM_063264063
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063120137 ⟸ XM_063264067
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063120134 ⟸ XM_063264064
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063120136 ⟸ XM_063264066
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063120135 ⟸ XM_063264065
- Peptide Label:	isoform X10
- UniProtKB:	B2GV12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120138 ⟸ XM_063264068
- Peptide Label:	isoform X13

Protein Domains

Periphilin-1 C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9M4-F1-model_v2	AlphaFold	D4A9M4	1-410	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306207	AgrOrtholog
BioCyc Gene	G2FUF-32336	BioCyc
Ensembl Genes	ENSRNOG00000022778	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000055688	ENTREZGENE
	ENSRNOT00000055688.4	UniProtKB/TrEMBL
	ENSRNOT00000090908.3	UniProtKB/TrEMBL
	ENSRNOT00000098702	ENTREZGENE
	ENSRNOT00000098702.2	UniProtKB/TrEMBL
	ENSRNOT00000102144	ENTREZGENE
	ENSRNOT00000102144.2	UniProtKB/TrEMBL
	ENSRNOT00000115812.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7099712	IMAGE-MGC_LOAD
InterPro	Periphilin-1_C	UniProtKB/TrEMBL
	Pphln1	UniProtKB/TrEMBL
KEGG Report	rno:366975	UniProtKB/TrEMBL
MGC_CLONE	MGC:187969	IMAGE-MGC_LOAD
NCBI Gene	366975	ENTREZGENE
PANTHER	PERIPHILIN-1	UniProtKB/TrEMBL
	PTHR15836	UniProtKB/TrEMBL
Pfam	Periphilin_C	UniProtKB/TrEMBL
PhenoGen	Pphln1	PhenoGen
RatGTEx	ENSRNOG00000022778	RatGTEx
UniProt	A0A0G2K2G1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A300	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A7X8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B6J6	ENTREZGENE, UniProtKB/TrEMBL
	A6K7T2	ENTREZGENE, UniProtKB/TrEMBL
	A6K7T3	ENTREZGENE, UniProtKB/TrEMBL
	A6K7T4	ENTREZGENE, UniProtKB/TrEMBL
	B2GV12	ENTREZGENE, UniProtKB/TrEMBL
	D4A9M4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Pphln1	periphilin 1	Pphln1_predicted	periphilin 1 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Pphln1_predicted	periphilin 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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