Baz1a (bromodomain adjacent to zinc finger domain, 1A) - Rat Genome Database

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Gene: Baz1a (bromodomain adjacent to zinc finger domain, 1A) Rattus norvegicus
Analyze
Symbol: Baz1a
Name: bromodomain adjacent to zinc finger domain, 1A
RGD ID: 1306199
Description: Predicted to enable DNA binding activity. Predicted to be involved in DNA-templated DNA replication; nucleosome assembly; and regulation of macromolecule metabolic process. Predicted to be located in nucleus and pericentric heterochromatin. Predicted to be part of ACF complex and CHRAC. Predicted to be active in nuclear chromosome. Orthologous to human BAZ1A (bromodomain adjacent to zinc finger domain 1A); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: bromodomain adjacent to zinc finger domain protein 1A; LOC314126
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8678,124,872 - 78,247,672 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl678,124,872 - 78,247,648 (-)EnsemblGRCr8
mRatBN7.2672,389,701 - 72,512,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl672,389,703 - 72,512,459 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx672,811,116 - 72,904,088 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0673,117,795 - 73,210,436 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0672,546,804 - 72,639,764 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0675,793,223 - 75,873,854 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl675,793,960 - 75,874,235 (-)Ensemblrn6Rnor6.0
Rnor_5.0685,333,774 - 85,412,648 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4675,239,089 - 75,327,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera671,233,873 - 71,314,047 (-)NCBICelera
RGSC_v3.1675,242,512 - 75,336,984 (-)NCBI
Cytogenetic Map6q23NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-dinitrotoluene  (EXP)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
daidzein  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (ISO)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
fenvalerate  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glycitein  (ISO)
indometacin  (ISO)
lead(0)  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
permethrin  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
succimer  (ISO)
tamoxifen  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
CHRAC  (IBA,IEA,ISO)
nuclear chromosome  (IBA,ISO)
nucleus  (IEA,ISO)
pericentric heterochromatin  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ATP-dependent chromatin remodeling: genetics, genomics and mechanisms. Hargreaves DC and Crabtree GR, Cell Res. 2011 Mar;21(3):396-420. doi: 10.1038/cr.2011.32. Epub 2011 Mar 1.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:8889548   PMID:9701556   PMID:10880450   PMID:11555636   PMID:12434153  


Genomics

Comparative Map Data
Baz1a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8678,124,872 - 78,247,672 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl678,124,872 - 78,247,648 (-)EnsemblGRCr8
mRatBN7.2672,389,701 - 72,512,516 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl672,389,703 - 72,512,459 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx672,811,116 - 72,904,088 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0673,117,795 - 73,210,436 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0672,546,804 - 72,639,764 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0675,793,223 - 75,873,854 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl675,793,960 - 75,874,235 (-)Ensemblrn6Rnor6.0
Rnor_5.0685,333,774 - 85,412,648 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4675,239,089 - 75,327,488 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera671,233,873 - 71,314,047 (-)NCBICelera
RGSC_v3.1675,242,512 - 75,336,984 (-)NCBI
Cytogenetic Map6q23NCBI
BAZ1A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381434,752,731 - 34,875,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1434,752,028 - 34,875,647 (-)Ensemblhg38GRCh38
GRCh371435,221,937 - 35,344,566 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361434,291,688 - 34,414,604 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341434,291,689 - 34,414,604NCBI
Celera1415,086,104 - 15,209,015 (-)NCBICelera
Cytogenetic Map14q13.1-q13.2NCBI
HuRef1415,335,300 - 15,458,090 (-)NCBIHuRef
CHM1_11435,220,660 - 35,343,450 (-)NCBICHM1_1
T2T-CHM13v2.01428,951,901 - 29,074,526 (-)NCBIT2T-CHM13v2.0
Baz1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391254,939,774 - 55,061,155 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1254,940,336 - 55,061,133 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381254,892,989 - 55,014,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1254,892,989 - 55,014,348 (-)Ensemblmm10GRCm38
MGSCv371255,993,976 - 56,087,323 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361255,811,119 - 55,908,939 (-)NCBIMGSCv36mm8
Celera1256,156,553 - 56,280,462 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1223.84NCBI
Baz1a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540926,149,665 - 26,231,180 (+)Ensembl
ChiLan1.0NW_00495540926,136,961 - 26,231,960 (+)NCBIChiLan1.0ChiLan1.0
BAZ1A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21536,070,705 - 36,293,764 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11435,287,205 - 35,407,864 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01415,510,881 - 15,632,516 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11433,698,645 - 33,813,281 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1433,699,424 - 33,804,473 (-)EnsemblpanPan2panpan1.1
BAZ1A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1813,604,694 - 13,694,508 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl813,605,182 - 13,693,847 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha813,402,475 - 13,491,737 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0813,712,075 - 13,801,686 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl813,712,076 - 13,801,192 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1813,412,851 - 13,502,472 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0813,478,243 - 13,567,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0813,767,640 - 13,857,159 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Baz1a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864045,462,807 - 45,574,444 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364948,968,704 - 9,080,620 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364948,968,704 - 9,080,620 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAZ1A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl764,969,640 - 65,069,889 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1764,969,626 - 65,069,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2769,799,806 - 69,899,460 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BAZ1A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12411,580,379 - 11,708,320 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2411,581,164 - 11,706,292 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666053533,277 - 662,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Baz1a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248381,908,527 - 2,007,052 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248381,907,825 - 2,007,089 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Baz1a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1768,256,916 - 68,347,670 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Baz1a
962 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:340
Count of miRNA genes:200
Interacting mature miRNAs:239
Transcripts:ENSRNOT00000009080
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)66345744194939581Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
4889848Pur25Proteinuria QTL 25140.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)66303731995934232Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)66345744194939581Rat

Markers in Region
RH127685  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2672,389,975 - 72,390,163 (+)MAPPERmRatBN7.2
Rnor_6.0675,793,498 - 75,793,685NCBIRnor6.0
Rnor_5.0685,334,049 - 85,334,236UniSTSRnor5.0
RGSC_v3.4675,238,925 - 75,239,112UniSTSRGSC3.4
Celera671,234,148 - 71,234,335UniSTS
Cytogenetic Map6q23UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AW531843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF560180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM387384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB577697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB614294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB732296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK595287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO565747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR469995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM109160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000009080   ⟹   ENSRNOP00000009080
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl678,124,872 - 78,247,648 (-)Ensembl
mRatBN7.2 Ensembl672,389,703 - 72,512,459 (-)Ensembl
Rnor_6.0 Ensembl675,793,960 - 75,874,235 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098593   ⟹   ENSRNOP00000079177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl678,124,872 - 78,247,648 (-)Ensembl
mRatBN7.2 Ensembl672,389,703 - 72,483,094 (-)Ensembl
RefSeq Acc Id: NM_001170568   ⟹   NP_001164039
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,217,788 (-)NCBI
mRatBN7.2672,389,701 - 72,482,626 (-)NCBI
Rnor_6.0675,793,223 - 75,873,854 (-)NCBI
Rnor_5.0685,333,774 - 85,412,648 (-)NCBI
Celera671,233,873 - 71,314,047 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112221   ⟹   XP_038968149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,218,283 (-)NCBI
mRatBN7.2672,389,701 - 72,483,121 (-)NCBI
RefSeq Acc Id: XM_039112222   ⟹   XP_038968150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,247,646 (-)NCBI
mRatBN7.2672,389,701 - 72,512,472 (-)NCBI
RefSeq Acc Id: XM_039112223   ⟹   XP_038968151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,247,672 (-)NCBI
mRatBN7.2672,389,701 - 72,512,516 (-)NCBI
RefSeq Acc Id: XM_039112224   ⟹   XP_038968152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,218,302 (-)NCBI
mRatBN7.2672,389,701 - 72,483,167 (-)NCBI
RefSeq Acc Id: XM_039112225   ⟹   XP_038968153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,218,301 (-)NCBI
mRatBN7.2672,389,701 - 72,483,165 (-)NCBI
RefSeq Acc Id: XM_039112226   ⟹   XP_038968154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,161,006 (-)NCBI
mRatBN7.2672,389,701 - 72,425,835 (-)NCBI
RefSeq Acc Id: XM_039112227   ⟹   XP_038968155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,161,006 (-)NCBI
mRatBN7.2672,389,701 - 72,425,835 (-)NCBI
RefSeq Acc Id: XM_063261904   ⟹   XP_063117974
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,218,283 (-)NCBI
RefSeq Acc Id: XM_063261905   ⟹   XP_063117975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,247,646 (-)NCBI
RefSeq Acc Id: XM_063261906   ⟹   XP_063117976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,247,672 (-)NCBI
RefSeq Acc Id: XM_063261907   ⟹   XP_063117977
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,247,646 (-)NCBI
RefSeq Acc Id: XM_063261908   ⟹   XP_063117978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,247,671 (-)NCBI
RefSeq Acc Id: XM_063261909   ⟹   XP_063117979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8678,124,872 - 78,217,827 (-)NCBI
RefSeq Acc Id: NP_001164039   ⟸   NM_001170568
- UniProtKB: F1M4U9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009080   ⟸   ENSRNOT00000009080
RefSeq Acc Id: XP_038968151   ⟸   XM_039112223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968150   ⟸   XM_039112222
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968152   ⟸   XM_039112224
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968153   ⟸   XM_039112225
- Peptide Label: isoform X3
- UniProtKB: A0A8I6G4X5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968149   ⟸   XM_039112221
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038968155   ⟸   XM_039112227
- Peptide Label: isoform X6
- UniProtKB: A6HBL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968154   ⟸   XM_039112226
- Peptide Label: isoform X5
- UniProtKB: A6HBL3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000079177   ⟸   ENSRNOT00000098593
RefSeq Acc Id: XP_063117976   ⟸   XM_063261906
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117978   ⟸   XM_063261908
- Peptide Label: isoform X3
- UniProtKB: A0A8I6G4X5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117977   ⟸   XM_063261907
- Peptide Label: isoform X3
- UniProtKB: A0A8I6G4X5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063117975   ⟸   XM_063261905
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117974   ⟸   XM_063261904
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063117979   ⟸   XM_063261909
- Peptide Label: isoform X4
Protein Domains
Bromo   DDT   PHD-type   WAC

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M4U9-F1-model_v2 AlphaFold F1M4U9 1-1521 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306199 AgrOrtholog
BioCyc Gene G2FUF-37499 BioCyc
Ensembl Genes ENSRNOG00000006828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009080 ENTREZGENE
  ENSRNOT00000009080.9 UniProtKB/TrEMBL
  ENSRNOT00000098593 ENTREZGENE
  ENSRNOT00000098593.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.920.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro Acf1_Bromo UniProtKB/TrEMBL
  BAZ1A UniProtKB/TrEMBL
  Bromodomain UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/TrEMBL
  Bromodomain_CS UniProtKB/TrEMBL
  DDT_dom_superfamily UniProtKB/TrEMBL
  WHIM1_dom UniProtKB/TrEMBL
  WHIM2_dom UniProtKB/TrEMBL
  WSTF_Acf1_Cbp146 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene 314126 ENTREZGENE
PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A UniProtKB/TrEMBL
  BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A UniProtKB/TrEMBL
Pfam Bromodomain UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  WAC_Acf1_DNA_bd UniProtKB/TrEMBL
  WHIM1 UniProtKB/TrEMBL
  WSD UniProtKB/TrEMBL
PhenoGen Baz1a PhenoGen
PRINTS BROMODOMAIN UniProtKB/TrEMBL
PROSITE BROMODOMAIN_1 UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  WAC UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000006828 RatGTEx
SMART BROMO UniProtKB/TrEMBL
  DDT UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
Superfamily-SCOP Bromodomain UniProtKB/TrEMBL
  FYVE_PHD_ZnF UniProtKB/TrEMBL
UniProt A0A8I6G4X5 ENTREZGENE, UniProtKB/TrEMBL
  A6HBL3 ENTREZGENE, UniProtKB/TrEMBL
  F1M4U9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Baz1a  bromodomain adjacent to zinc finger domain, 1A   Baz1a_predicted  bromodomain adjacent to zinc finger domain, 1A (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Baz1a_predicted  bromodomain adjacent to zinc finger domain, 1A (predicted)      Symbol and Name status set to approved 70820 APPROVED